Wall clock time and date at job start Tue Mar 31 2020 06:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.34941 * 117.00183 * 2 1 4 4 O 1.21686 * 120.00163 * 359.97438 * 3 2 1 5 5 C 1.41419 * 120.00519 * 180.02562 * 3 2 1 6 6 C 1.35097 * 121.13685 * 173.01761 * 5 3 2 7 7 C 1.50692 * 119.46296 * 0.02562 * 6 5 3 8 8 N 1.36456 * 121.07253 * 179.97438 * 6 5 3 9 9 C 1.33903 * 123.69872 * 359.73255 * 8 6 5 10 10 S 1.71199 * 118.92313 * 180.27839 * 9 8 6 11 11 N 1.34766 * 122.15043 * 0.55400 * 9 8 6 12 12 C 1.47264 * 118.41902 * 359.47631 * 11 9 8 13 13 H 1.08998 * 107.96325 * 122.13019 * 12 11 9 14 14 C 1.50699 * 107.96019 * 238.41190 * 12 11 9 15 15 C 1.38292 * 119.96966 * 39.72296 * 14 12 11 16 16 C 1.38244 * 120.10969 * 179.72955 * 15 14 12 17 17 C 1.38166 * 120.05871 * 0.54739 * 16 15 14 18 18 C 1.38714 * 119.93727 * 359.72549 * 17 16 15 19 19 O 1.35909 * 120.05259 * 179.97438 * 18 17 16 20 20 C 1.42902 * 116.99913 * 0.02562 * 19 18 17 21 21 C 1.52994 * 109.46839 * 180.02562 * 20 19 18 22 22 C 1.50703 * 109.47104 * 180.02562 * 21 20 19 23 23 H 1.08006 * 119.99967 * 0.02562 * 22 21 20 24 24 C 1.37875 * 120.00422 * 179.97438 * 22 21 20 25 25 N 1.31513 * 119.99846 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00151 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46682 * 60.00874 * 26 24 22 28 28 H 1.48506 * 109.46911 * 180.02562 * 26 24 22 29 29 H 1.48494 * 109.47295 * 300.00604 * 26 24 22 30 30 C 1.38117 * 119.97536 * 219.99966 * 14 12 11 31 31 H 1.08999 * 109.47219 * 59.99837 * 1 2 3 32 32 H 1.09005 * 109.47058 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46992 * 300.00066 * 1 2 3 34 34 H 1.09002 * 109.47283 * 84.37296 * 7 6 5 35 35 H 1.09004 * 109.46944 * 204.36463 * 7 6 5 36 36 H 1.08993 * 109.47320 * 324.36822 * 7 6 5 37 37 H 0.96994 * 118.15486 * 180.02562 * 8 6 5 38 38 H 0.97002 * 120.79199 * 179.74865 * 11 9 8 39 39 H 1.08001 * 119.94545 * 359.97438 * 15 14 12 40 40 H 1.08002 * 119.97088 * 180.25157 * 16 15 14 41 41 H 1.08001 * 120.03348 * 179.75414 * 17 16 15 42 42 H 1.09002 * 109.47569 * 300.00433 * 20 19 18 43 43 H 1.09004 * 109.46702 * 60.00665 * 20 19 18 44 44 H 1.08999 * 109.47130 * 299.99808 * 21 20 19 45 45 H 1.08997 * 109.47356 * 60.00227 * 21 20 19 46 46 H 0.96994 * 120.00236 * 179.97438 * 25 24 22 47 47 H 1.08002 * 120.02550 * 0.02562 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2023 0.0000 4 8 1.3790 2.2229 -0.0005 5 6 3.4539 1.2764 -0.0005 6 6 4.0913 2.4592 -0.1411 7 6 3.2842 3.7219 -0.2996 8 7 5.4541 2.5293 -0.1410 9 6 6.2527 1.4637 -0.0003 10 16 7.9492 1.6934 -0.0108 11 7 5.7648 0.2158 0.1439 12 6 4.3038 0.0317 0.1570 13 1 4.0444 -0.6563 -0.6476 14 6 3.9296 -0.6233 1.4616 15 6 4.5609 -0.2428 2.6317 16 6 4.2160 -0.8378 3.8309 17 6 3.2472 -1.8224 3.8615 18 6 2.6165 -2.2098 2.6884 19 8 1.6636 -3.1784 2.7157 20 6 1.3607 -3.7547 3.9878 21 6 0.2738 -4.8183 3.8199 22 6 -0.0462 -5.4257 5.1615 23 1 0.4734 -5.0866 6.0456 24 6 -1.0030 -6.4134 5.2606 25 7 -1.6362 -6.8259 4.1843 26 14 -1.3991 -7.1667 6.9235 27 1 -1.8812 -6.1065 7.8449 28 1 -2.4542 -8.1989 6.7606 29 1 -0.1765 -7.7936 7.4868 30 6 2.9605 -1.6071 1.4868 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.9988 4.0965 0.6835 35 1 3.8826 4.4733 -0.8149 36 1 2.3877 3.5094 -0.8818 37 1 5.8676 3.4005 -0.2445 38 1 6.3617 -0.5426 0.2408 39 1 5.3219 0.5232 2.6092 40 1 4.7076 -0.5361 4.7440 41 1 2.9809 -2.2898 4.7981 42 1 2.2581 -4.2149 4.4013 43 1 1.0067 -2.9766 4.6641 44 1 -0.6238 -4.3584 3.4064 45 1 0.6280 -5.5963 3.1437 46 1 -2.3091 -7.5210 4.2539 47 1 2.4712 -1.9073 0.5720 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065621512.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:48 Heat of formation + Delta-G solvation = -56.098154 kcal Electronic energy + Delta-G solvation = -32114.182215 eV Core-core repulsion = 27775.195618 eV Total energy + Delta-G solvation = -4338.986597 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.129 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.13113 -40.42880 -39.86568 -37.75493 -37.04562 -35.83553 -34.33222 -33.44139 -31.39210 -30.78624 -29.74550 -29.25110 -27.81063 -26.40613 -25.27420 -24.63397 -22.85678 -22.63972 -21.90769 -20.49617 -20.27631 -19.18015 -18.29163 -17.95906 -17.38132 -17.01997 -16.65133 -16.40689 -16.12679 -15.89501 -15.75526 -15.57560 -15.42228 -14.69891 -14.54842 -14.38135 -14.09300 -13.94587 -13.56978 -13.37289 -13.10686 -12.99148 -12.83702 -12.45691 -12.37374 -12.11275 -11.81153 -11.71878 -11.58275 -11.46232 -11.37719 -10.92429 -10.90459 -10.83824 -10.60264 -10.51907 -9.96296 -9.74134 -9.39000 -9.07051 -8.95275 -8.51264 -8.39307 -8.26463 -8.00623 -6.16738 -4.21703 -0.17040 1.04257 1.07925 1.28144 1.48814 2.05474 2.23882 2.46186 2.71276 3.24081 3.28889 3.30148 3.44129 3.65777 3.82497 4.10429 4.27821 4.34327 4.47830 4.62209 4.74319 4.89941 4.96495 5.01237 5.03860 5.08585 5.13622 5.19847 5.25990 5.30356 5.46408 5.51855 5.57328 5.59347 5.77296 5.93006 5.93542 5.98365 6.15263 6.23503 6.30465 6.42896 6.45528 6.52106 6.60625 6.75843 7.41182 7.45783 7.55366 7.72413 7.94715 8.16271 8.83468 9.43025 10.94680 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.002111 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.309274 B =13262.454060 C =14611.603922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.337 6.337 3 C 0.533 3.467 4 O -0.511 6.511 5 C -0.247 4.247 6 C 0.224 3.776 7 C -0.135 4.135 8 N -0.600 5.600 9 C 0.559 3.441 10 S -0.603 6.603 11 N -0.637 5.637 12 C 0.217 3.783 13 H 0.108 0.892 14 C -0.087 4.087 15 C -0.153 4.153 16 C -0.080 4.080 17 C -0.201 4.201 18 C 0.145 3.855 19 O -0.313 6.313 20 C 0.065 3.935 21 C 0.027 3.973 22 C -0.529 4.529 23 H 0.057 0.943 24 C 0.062 3.938 25 N -0.889 5.889 26 Si 0.899 3.101 27 H -0.275 1.275 28 H -0.285 1.285 29 H -0.275 1.275 30 C -0.122 4.122 31 H 0.059 0.941 32 H 0.108 0.892 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.443 0.557 38 H 0.449 0.551 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.132 0.868 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.027 0.973 45 H 0.028 0.972 46 H 0.264 0.736 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.927 20.454 -11.303 25.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.253 6.253 3 C 0.381 3.619 4 O -0.404 6.404 5 C -0.257 4.257 6 C 0.116 3.884 7 C -0.192 4.192 8 N -0.224 5.224 9 C 0.202 3.798 10 S -0.469 6.469 11 N -0.269 5.269 12 C 0.110 3.890 13 H 0.126 0.874 14 C -0.088 4.088 15 C -0.172 4.172 16 C -0.098 4.098 17 C -0.220 4.220 18 C 0.098 3.902 19 O -0.226 6.226 20 C -0.009 4.009 21 C -0.010 4.010 22 C -0.567 4.567 23 H 0.075 0.925 24 C -0.141 4.141 25 N -0.527 5.527 26 Si 0.726 3.274 27 H -0.201 1.201 28 H -0.211 1.211 29 H -0.201 1.201 30 C -0.141 4.141 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.143 0.857 37 H 0.286 0.714 38 H 0.295 0.705 39 H 0.128 0.872 40 H 0.140 0.860 41 H 0.150 0.850 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.074 0.926 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.355 20.479 -11.526 25.680 hybrid contribution -0.845 -0.577 1.363 1.704 sum 9.510 19.902 -10.163 24.286 Atomic orbital electron populations 1.22969 0.76154 1.04533 1.02201 1.86295 1.23733 1.31387 1.83844 1.18377 0.87578 0.82225 0.73702 1.90842 1.66933 1.35121 1.47493 1.18777 0.92178 0.93008 1.21764 1.20499 0.83244 0.97114 0.87495 1.21618 1.00743 0.91126 1.05671 1.42207 1.03855 1.10745 1.65544 1.22250 0.94918 0.82693 0.79933 1.93916 0.89461 1.91922 1.71572 1.45687 1.07944 1.06445 1.66828 1.18923 0.77889 0.94722 0.97474 0.87412 1.19540 0.98238 0.97263 0.93774 1.20604 1.02107 1.02248 0.92197 1.20840 0.96178 0.95194 0.97560 1.21479 1.00518 1.01579 0.98429 1.19124 0.88812 0.88845 0.93435 1.86182 1.51884 1.48636 1.35869 1.23359 0.99972 0.96346 0.81242 1.19109 0.91993 0.91819 0.98108 1.20920 1.21908 1.20862 0.92977 0.92451 1.24978 0.95738 0.96448 0.96928 1.69953 1.25213 1.29357 1.28176 0.86552 0.78175 0.78971 0.83718 1.20085 1.21076 1.20065 1.20201 0.99251 0.97391 0.97227 0.92217 0.87362 0.91960 0.87900 0.90695 0.85695 0.71438 0.70516 0.87217 0.85994 0.85012 0.93082 0.93142 0.95420 0.95371 0.92599 0.84311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.45 101.05 1.06 1.38 16 2 O -0.34 -3.48 6.81 -41.15 -0.28 -3.76 16 3 C 0.53 5.32 7.32 31.94 0.23 5.56 16 4 O -0.51 -5.56 12.87 -19.41 -0.25 -5.81 16 5 C -0.25 -2.06 5.30 -104.12 -0.55 -2.61 16 6 C 0.22 1.43 6.84 -81.66 -0.56 0.88 16 7 C -0.14 -0.63 8.71 36.00 0.31 -0.32 16 8 N -0.60 -3.64 5.13 -10.05 -0.05 -3.69 16 9 C 0.56 4.70 7.85 -87.71 -0.69 4.01 16 10 S -0.60 -7.36 30.72 -107.50 -3.30 -10.66 16 11 N -0.64 -4.85 4.47 -57.11 -0.26 -5.11 16 12 C 0.22 1.79 3.14 -69.41 -0.22 1.57 16 13 H 0.11 0.79 7.96 -51.93 -0.41 0.38 16 14 C -0.09 -0.92 4.49 -104.65 -0.47 -1.39 16 15 C -0.15 -1.70 9.28 -39.56 -0.37 -2.06 16 16 C -0.08 -0.96 10.04 -39.61 -0.40 -1.36 16 17 C -0.20 -2.86 9.04 -39.43 -0.36 -3.21 16 18 C 0.15 2.24 6.69 -39.22 -0.26 1.98 16 19 O -0.31 -5.84 10.14 -19.45 -0.20 -6.03 16 20 C 0.06 1.30 4.68 37.15 0.17 1.47 16 21 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 22 C -0.53 -14.24 9.11 -34.44 -0.31 -14.55 16 23 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 24 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 25 N -0.89 -25.69 13.29 55.43 0.74 -24.96 16 26 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 30 C -0.12 -1.56 7.81 -39.44 -0.31 -1.86 16 31 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 32 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 34 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.16 8.05 -51.93 -0.42 -0.26 16 36 H 0.13 0.78 5.69 -51.93 -0.30 0.48 16 37 H 0.44 1.85 8.39 -40.82 -0.34 1.51 16 38 H 0.45 3.13 8.80 -40.82 -0.36 2.77 16 39 H 0.11 1.13 7.64 -52.49 -0.40 0.73 16 40 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.13 1.87 6.30 -52.49 -0.33 1.54 16 42 H 0.05 0.98 7.66 -51.93 -0.40 0.58 16 43 H 0.05 0.97 7.66 -51.93 -0.40 0.57 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.14 1.68 6.88 -52.49 -0.36 1.32 16 LS Contribution 403.79 15.07 6.09 6.09 Total: -1.00 -32.90 403.79 -11.71 -44.62 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.22 Total: 2.00 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -2.96 Total: -8.40 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.43 Total: -33.75 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.73 Total: -15.61 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: -7.36 SS G_CDS: -3.30 Total: -10.66 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.90 -11.71 -44.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065621512.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.482 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds