Wall clock time and date at job start Tue Mar 31 2020 06:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.34957 * 116.99715 * 2 1 4 4 O 1.21685 * 119.99905 * 359.97438 * 3 2 1 5 5 C 1.41415 * 119.99573 * 180.02562 * 3 2 1 6 6 C 1.35107 * 121.12901 * 180.29973 * 5 3 2 7 7 C 1.50694 * 119.46313 * 359.97438 * 6 5 3 8 8 N 1.36462 * 121.07091 * 180.23442 * 6 5 3 9 9 C 1.33896 * 123.69379 * 359.46072 * 8 6 5 10 10 S 1.71205 * 118.92060 * 180.26087 * 9 8 6 11 11 N 1.34765 * 122.16095 * 0.24937 * 9 8 6 12 12 C 1.47267 * 118.41264 * 0.02562 * 11 9 8 13 13 H 1.09003 * 107.96144 * 238.16302 * 12 11 9 14 14 C 1.50697 * 107.95977 * 121.88449 * 12 11 9 15 15 C 1.38291 * 119.97047 * 320.00548 * 14 12 11 16 16 C 1.38244 * 120.11327 * 180.02562 * 15 14 12 17 17 C 1.38165 * 120.05127 * 359.97438 * 16 15 14 18 18 C 1.38701 * 119.94767 * 359.97438 * 17 16 15 19 19 O 1.35903 * 120.05727 * 179.97438 * 18 17 16 20 20 C 1.42901 * 117.00067 * 0.02562 * 19 18 17 21 21 C 1.53000 * 109.47038 * 180.02562 * 20 19 18 22 22 C 1.50699 * 109.46651 * 180.02562 * 21 20 19 23 23 H 1.08000 * 120.00771 * 359.97438 * 22 21 20 24 24 C 1.37880 * 119.99975 * 180.02562 * 22 21 20 25 25 N 1.31522 * 119.99656 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00363 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46939 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47322 * 119.99288 * 26 24 22 29 29 H 1.48501 * 109.46936 * 239.99703 * 26 24 22 30 30 C 1.38118 * 119.97414 * 139.72392 * 14 12 11 31 31 H 1.08994 * 109.47115 * 299.99825 * 1 2 3 32 32 H 1.08996 * 109.46866 * 59.99926 * 1 2 3 33 33 H 1.08999 * 109.46858 * 179.97438 * 1 2 3 34 34 H 1.09009 * 109.47010 * 180.24688 * 7 6 5 35 35 H 1.08997 * 109.47077 * 300.24170 * 7 6 5 36 36 H 1.08996 * 109.47704 * 60.24923 * 7 6 5 37 37 H 0.97001 * 118.15351 * 179.75433 * 8 6 5 38 38 H 0.97000 * 120.79990 * 180.02562 * 11 9 8 39 39 H 1.07998 * 119.94195 * 359.96962 * 15 14 12 40 40 H 1.07996 * 119.97492 * 179.97438 * 16 15 14 41 41 H 1.08004 * 120.02790 * 179.97438 * 17 16 15 42 42 H 1.09005 * 109.46685 * 299.99825 * 20 19 18 43 43 H 1.09000 * 109.47233 * 59.99800 * 20 19 18 44 44 H 1.09000 * 109.46793 * 299.99686 * 21 20 19 45 45 H 1.08997 * 109.47251 * 60.00339 * 21 20 19 46 46 H 0.97000 * 119.99747 * 180.02562 * 25 24 22 47 47 H 1.08000 * 120.02783 * 0.02562 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2025 0.0000 4 8 1.3788 2.2230 -0.0005 5 6 3.4539 1.2765 -0.0005 6 6 4.0909 2.4679 0.0055 7 6 3.2833 3.7402 0.0124 8 7 5.4537 2.5380 0.0002 9 6 6.2527 1.4635 -0.0007 10 16 7.9492 1.6934 -0.0008 11 7 5.7653 0.2071 -0.0012 12 6 4.3042 0.0223 -0.0014 13 1 4.0393 -0.5629 0.8792 14 6 3.9384 -0.7868 -1.2191 15 6 4.5736 -0.5475 -2.4239 16 6 4.2400 -1.2876 -3.5429 17 6 3.2709 -2.2689 -3.4597 18 6 2.6330 -2.5115 -2.2522 19 8 1.6791 -3.4758 -2.1680 20 6 1.3834 -4.2020 -3.3627 21 6 0.2931 -5.2360 -3.0743 22 6 -0.0181 -6.0022 -4.3341 23 1 0.5086 -5.7742 -5.2490 24 6 -0.9762 -6.9936 -4.3191 25 7 -1.6181 -7.2709 -3.2051 26 14 -1.3616 -7.9439 -5.8804 27 1 -0.5076 -7.4440 -6.9877 28 1 -1.0927 -9.3876 -5.6604 29 1 -2.7914 -7.7550 -6.2346 30 6 2.9731 -1.7705 -1.1294 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.9562 4.5977 0.0122 35 1 2.6513 3.7742 -0.8751 36 1 2.6582 3.7691 0.9048 37 1 5.8669 3.4156 0.0012 38 1 6.3624 -0.5573 -0.0014 39 1 5.3310 0.2194 -2.4910 40 1 4.7372 -1.0986 -4.4828 41 1 3.0102 -2.8466 -4.3342 42 1 1.0348 -3.5114 -4.1307 43 1 2.2828 -4.7094 -3.7114 44 1 0.6413 -5.9265 -2.3062 45 1 -0.6062 -4.7282 -2.7259 46 1 -2.2918 -7.9686 -3.1944 47 1 2.4802 -1.9598 -0.1872 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065621516.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:51 Heat of formation + Delta-G solvation = -59.089447 kcal Electronic energy + Delta-G solvation = -32136.258123 eV Core-core repulsion = 27797.141815 eV Total energy + Delta-G solvation = -4339.116309 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.129 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.11880 -40.40111 -39.86020 -37.74882 -37.00061 -35.84046 -34.33762 -33.44193 -31.38758 -30.78560 -29.73911 -29.24459 -27.80457 -26.40135 -25.27379 -24.63838 -22.84245 -22.63605 -21.90423 -20.49247 -20.25949 -19.17208 -18.28012 -17.94525 -17.36337 -17.02878 -16.61928 -16.40293 -16.12435 -15.88375 -15.74460 -15.56814 -15.41767 -14.69893 -14.52931 -14.38026 -14.01431 -13.94416 -13.53480 -13.38353 -13.06017 -13.00764 -12.86597 -12.46939 -12.38897 -12.09604 -11.81530 -11.71573 -11.57704 -11.46366 -11.36658 -10.95897 -10.85692 -10.82327 -10.67435 -10.55827 -9.96630 -9.74024 -9.36295 -9.06989 -8.93579 -8.52069 -8.39290 -8.26595 -7.99464 -6.17300 -4.21979 -0.17346 1.04402 1.08181 1.28837 1.49665 2.05795 2.25625 2.46749 2.73248 3.21710 3.29193 3.32299 3.43489 3.66513 3.83148 4.10067 4.27888 4.33992 4.46813 4.61167 4.74450 4.91898 4.97251 4.99985 5.05791 5.09286 5.14682 5.19543 5.26836 5.30272 5.45834 5.51538 5.58171 5.60217 5.76836 5.93249 5.94007 5.99210 6.15936 6.21064 6.31062 6.43604 6.46080 6.52180 6.61040 6.76726 7.41580 7.47513 7.55266 7.72765 7.95011 8.16153 8.83712 9.42874 10.94199 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.014029 B = 0.002111 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.456152 B =13261.580773 C =14612.140406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.336 6.336 3 C 0.531 3.469 4 O -0.513 6.513 5 C -0.247 4.247 6 C 0.223 3.777 7 C -0.118 4.118 8 N -0.599 5.599 9 C 0.559 3.441 10 S -0.603 6.603 11 N -0.637 5.637 12 C 0.217 3.783 13 H 0.107 0.893 14 C -0.086 4.086 15 C -0.153 4.153 16 C -0.080 4.080 17 C -0.201 4.201 18 C 0.144 3.856 19 O -0.313 6.313 20 C 0.065 3.935 21 C 0.026 3.974 22 C -0.527 4.527 23 H 0.058 0.942 24 C 0.061 3.939 25 N -0.889 5.889 26 Si 0.898 3.102 27 H -0.272 1.272 28 H -0.282 1.282 29 H -0.282 1.282 30 C -0.117 4.117 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.443 0.557 38 H 0.449 0.551 39 H 0.109 0.891 40 H 0.122 0.878 41 H 0.132 0.868 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.980 21.690 8.505 25.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.251 6.251 3 C 0.379 3.621 4 O -0.406 6.406 5 C -0.257 4.257 6 C 0.115 3.885 7 C -0.175 4.175 8 N -0.223 5.223 9 C 0.202 3.798 10 S -0.469 6.469 11 N -0.269 5.269 12 C 0.110 3.890 13 H 0.125 0.875 14 C -0.088 4.088 15 C -0.171 4.171 16 C -0.098 4.098 17 C -0.220 4.220 18 C 0.097 3.903 19 O -0.226 6.226 20 C -0.009 4.009 21 C -0.011 4.011 22 C -0.565 4.565 23 H 0.077 0.923 24 C -0.142 4.142 25 N -0.527 5.527 26 Si 0.725 3.275 27 H -0.196 1.196 28 H -0.208 1.208 29 H -0.208 1.208 30 C -0.136 4.136 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.127 0.873 34 H 0.091 0.909 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.286 0.714 38 H 0.295 0.705 39 H 0.127 0.873 40 H 0.140 0.860 41 H 0.150 0.850 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.412 21.754 8.749 25.655 hybrid contribution -0.887 -0.755 -1.236 1.699 sum 9.525 20.998 7.513 24.250 Atomic orbital electron populations 1.22963 0.76287 1.04537 1.02117 1.86355 1.23628 1.31243 1.83873 1.18394 0.87554 0.82308 0.73855 1.90900 1.66878 1.35359 1.47419 1.18804 0.92196 0.92400 1.22317 1.20514 0.83268 0.97327 0.87366 1.21343 0.99072 0.90230 1.06825 1.42229 1.03800 1.09883 1.66408 1.22250 0.94920 0.82747 0.79889 1.93919 0.89457 1.92281 1.71206 1.45690 1.07966 1.05567 1.67671 1.18927 0.77902 0.93628 0.98558 0.87535 1.19514 0.98319 0.96799 0.94125 1.20596 1.02130 1.01867 0.92552 1.20830 0.96255 0.94677 0.98081 1.21470 1.00441 1.02043 0.98039 1.19114 0.88828 0.89049 0.93277 1.86178 1.51812 1.45765 1.38839 1.23354 1.00032 0.93625 0.83892 1.19121 0.91978 0.91896 0.98105 1.20997 1.21578 1.18604 0.95324 0.92343 1.24988 0.95748 0.96932 0.96492 1.69981 1.24991 1.31514 1.26210 0.86440 0.78258 0.79755 0.82998 1.19643 1.20789 1.20813 1.20166 0.99062 0.96007 0.98349 0.92235 0.92072 0.87347 0.90945 0.87281 0.87353 0.71424 0.70514 0.87251 0.86028 0.85047 0.93154 0.93091 0.95374 0.95410 0.92721 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.45 101.05 1.06 1.38 16 2 O -0.34 -3.52 6.50 -41.20 -0.27 -3.78 16 3 C 0.53 5.30 7.45 31.94 0.24 5.54 16 4 O -0.51 -5.56 12.86 -19.41 -0.25 -5.81 16 5 C -0.25 -2.05 5.30 -104.12 -0.55 -2.60 16 6 C 0.22 1.41 6.84 -81.65 -0.56 0.85 16 7 C -0.12 -0.54 8.40 36.00 0.30 -0.24 16 8 N -0.60 -3.60 5.13 -10.04 -0.05 -3.65 16 9 C 0.56 4.67 7.85 -87.71 -0.69 3.98 16 10 S -0.60 -7.33 30.73 -107.50 -3.30 -10.64 16 11 N -0.64 -4.83 4.48 -57.11 -0.26 -5.08 16 12 C 0.22 1.78 3.17 -69.41 -0.22 1.56 16 13 H 0.11 0.78 7.95 -51.93 -0.41 0.37 16 14 C -0.09 -0.91 4.46 -104.65 -0.47 -1.38 16 15 C -0.15 -1.68 9.28 -39.56 -0.37 -2.05 16 16 C -0.08 -0.96 10.04 -39.61 -0.40 -1.36 16 17 C -0.20 -2.84 9.04 -39.44 -0.36 -3.20 16 18 C 0.14 2.22 6.69 -39.22 -0.26 1.96 16 19 O -0.31 -5.81 10.14 -19.44 -0.20 -6.01 16 20 C 0.06 1.30 4.68 37.16 0.17 1.47 16 21 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 22 C -0.53 -14.17 9.11 -34.44 -0.31 -14.49 16 23 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 24 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 25 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 26 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 30 C -0.12 -1.48 7.57 -39.43 -0.30 -1.78 16 31 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 32 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 33 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.14 7.84 -51.92 -0.41 -0.27 16 35 H 0.11 0.64 7.22 -51.93 -0.38 0.26 16 36 H 0.11 0.56 7.27 -51.93 -0.38 0.18 16 37 H 0.44 1.81 8.26 -40.82 -0.34 1.48 16 38 H 0.45 3.12 8.80 -40.82 -0.36 2.76 16 39 H 0.11 1.12 7.65 -52.49 -0.40 0.72 16 40 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.13 1.86 6.30 -52.48 -0.33 1.53 16 42 H 0.05 0.96 7.66 -51.93 -0.40 0.56 16 43 H 0.05 0.98 7.66 -51.93 -0.40 0.58 16 44 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 47 H 0.14 1.66 6.95 -52.49 -0.36 1.30 16 LS Contribution 403.48 15.07 6.08 6.08 Total: -1.00 -32.92 403.48 -11.73 -44.65 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.24 Total: 1.73 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -2.96 Total: -8.27 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.43 Total: -33.66 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.71 Total: -15.61 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -7.33 SS G_CDS: -3.30 Total: -10.64 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.92 -11.73 -44.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065621516.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.440 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds