Wall clock time and date at job start Tue Mar 31 2020 05:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39773 * 125.83745 * 2 1 4 4 C 1.36172 * 107.81432 * 179.97438 * 3 2 1 5 5 N 1.39216 * 126.21891 * 180.02562 * 4 3 2 6 6 S 1.65603 * 119.99784 * 5.75592 * 5 4 3 7 7 O 1.42101 * 106.39829 * 176.68608 * 6 5 4 8 8 O 1.42097 * 106.40179 * 309.60358 * 6 5 4 9 9 C 1.76189 * 107.21849 * 63.14963 * 6 5 4 10 10 C 1.38267 * 120.10991 * 264.19440 * 9 6 5 11 11 C 1.37939 * 119.77086 * 179.90720 * 10 9 6 12 12 C 1.38907 * 120.53757 * 0.52363 * 11 10 9 13 13 C 1.37661 * 119.69206 * 359.44420 * 12 11 10 14 14 C 1.37932 * 120.11505 * 84.46849 * 9 6 5 15 15 C 1.50627 * 122.56054 * 180.80190 * 13 12 11 16 16 C 1.52732 * 110.59678 * 342.00350 * 15 13 12 17 17 C 1.53314 * 108.41390 * 51.09694 * 16 15 13 18 18 C 1.50635 * 117.75242 * 179.12859 * 12 11 10 19 19 N 1.35243 * 107.56006 * 0.02562 * 4 3 2 20 20 C 1.46500 * 126.04118 * 179.97438 * 19 4 3 21 21 C 1.50710 * 109.46742 * 269.99371 * 20 19 4 22 22 H 1.07994 * 119.99891 * 0.02562 * 21 20 19 23 23 C 1.37878 * 119.99706 * 179.97438 * 21 20 19 24 24 N 1.31520 * 120.00099 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99625 * 180.02562 * 23 21 20 26 26 H 1.48490 * 109.47511 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46664 * 120.00442 * 25 23 21 28 28 H 1.48499 * 109.46942 * 240.00221 * 25 23 21 29 29 N 1.30841 * 125.84451 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.46989 * 270.04045 * 1 2 3 31 31 H 1.08997 * 109.47455 * 30.04434 * 1 2 3 32 32 H 1.09003 * 109.46707 * 150.04693 * 1 2 3 33 33 H 1.08001 * 126.09120 * 359.95877 * 3 2 1 34 34 H 0.96995 * 119.99377 * 185.76346 * 5 4 3 35 35 H 1.07998 * 120.11817 * 0.15878 * 10 9 6 36 36 H 1.08000 * 119.72978 * 180.24185 * 11 10 9 37 37 H 1.07995 * 119.73360 * 359.97438 * 14 9 6 38 38 H 1.08996 * 109.25314 * 102.28575 * 15 13 12 39 39 H 1.08999 * 109.25066 * 221.71546 * 15 13 12 40 40 H 1.09008 * 109.67240 * 291.36771 * 16 15 13 41 41 H 1.08991 * 109.70691 * 170.85216 * 16 15 13 42 42 H 1.09000 * 109.68314 * 170.46919 * 17 16 15 43 43 H 1.09004 * 109.67814 * 49.92691 * 17 16 15 44 44 H 1.08994 * 109.25865 * 282.51277 * 18 12 11 45 45 H 1.09002 * 109.25251 * 41.94416 * 18 12 11 46 46 H 1.08994 * 109.47497 * 29.99856 * 20 19 4 47 47 H 1.09006 * 109.47275 * 150.00211 * 20 19 4 48 48 H 0.96995 * 119.99962 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1331 0.0000 4 6 3.6202 0.7118 0.0006 5 7 4.7500 1.5253 0.0013 6 16 4.5879 3.1671 0.1453 7 8 5.9053 3.6978 0.1911 8 8 3.6243 3.5615 -0.8217 9 6 3.8689 3.4839 1.7223 10 6 2.5028 3.6625 1.8386 11 6 1.9471 3.9082 3.0769 12 6 2.7501 3.9885 4.2075 13 6 4.1102 3.8100 4.0919 14 6 4.6676 3.5601 2.8443 15 6 5.0387 3.8658 5.2767 16 6 4.3630 4.5615 6.4566 17 6 2.9966 3.9056 6.6877 18 6 2.0798 4.2793 5.5248 19 7 3.6093 -0.6406 0.0004 20 6 4.7869 -1.5121 0.0003 21 6 5.1906 -1.8108 -1.4207 22 1 4.6267 -1.3929 -2.2414 23 6 6.2805 -2.6167 -1.6727 24 7 6.9676 -3.1252 -0.6732 25 14 6.7813 -2.9863 -3.4340 26 1 5.8533 -2.2988 -4.3672 27 1 8.1657 -2.5020 -3.6669 28 1 6.7237 -4.4517 -3.6678 29 7 2.2732 -1.0606 0.0005 30 1 -0.3633 0.0007 1.0277 31 1 -0.3634 0.8895 -0.5145 32 1 -0.3633 -0.8904 -0.5131 33 1 1.9903 2.1599 -0.0006 34 1 5.6319 1.1304 -0.0827 35 1 1.8725 3.6058 0.9635 36 1 0.8795 4.0438 3.1675 37 1 5.7350 3.4245 2.7522 38 1 5.3128 2.8515 5.5666 39 1 5.9387 4.4162 5.0024 40 1 4.2288 5.6195 6.2310 41 1 4.9785 4.4519 7.3494 42 1 2.5693 4.2672 7.6230 43 1 3.1120 2.8225 6.7309 44 1 1.8429 5.3417 5.5809 45 1 1.1578 3.7019 5.5940 46 1 5.6083 -1.0130 0.5142 47 1 4.5495 -2.4438 0.5139 48 1 7.7345 -3.6919 -0.8505 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066247993.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:27 Heat of formation + Delta-G solvation = 9.246238 kcal Electronic energy + Delta-G solvation = -32541.301844 eV Core-core repulsion = 28302.867455 eV Total energy + Delta-G solvation = -4238.434389 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.66479 -40.28798 -37.28660 -36.42803 -35.88004 -35.07609 -33.84789 -32.92663 -32.10382 -30.74858 -29.21771 -29.18412 -28.03337 -26.08711 -24.31443 -23.25269 -22.92284 -22.59066 -20.94302 -20.20517 -19.85021 -18.74130 -17.79307 -17.11831 -16.88952 -16.65207 -16.18367 -15.96607 -15.23129 -14.97284 -14.76251 -14.56826 -14.46937 -14.28021 -14.19077 -13.76796 -13.47113 -13.19486 -12.91976 -12.87679 -12.63048 -12.52596 -12.41464 -12.25968 -12.09398 -11.98875 -11.94158 -11.91397 -11.84793 -11.52679 -11.40587 -11.25064 -11.22178 -10.90493 -10.89423 -10.79160 -10.46823 -10.32601 -9.83715 -9.80149 -9.23979 -8.90948 -8.71638 -8.06642 -7.67393 -6.33201 -4.41296 0.22875 0.69552 1.13902 2.56280 2.79989 3.17705 3.24756 3.25920 3.31103 3.33226 3.59348 3.73860 4.19568 4.25662 4.29393 4.41957 4.53891 4.62331 4.75900 4.85052 4.95028 5.00393 5.02646 5.13517 5.17092 5.23205 5.23827 5.41329 5.47927 5.51166 5.63262 5.66703 5.70610 5.73604 5.85518 5.92237 5.93386 5.95796 6.01850 6.04688 6.08792 6.24249 6.30453 6.42653 6.69230 6.79353 6.91503 6.98523 7.36100 7.60242 7.78916 7.89327 8.51731 8.67853 9.26458 10.74373 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.010622 B = 0.002941 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.392450 B = 9517.610040 C = 9980.828529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.070 3.930 3 C -0.338 4.338 4 C 0.333 3.667 5 N -1.027 6.027 6 S 2.703 3.297 7 O -0.950 6.950 8 O -0.939 6.939 9 C -0.672 4.672 10 C -0.012 4.012 11 C -0.141 4.141 12 C -0.021 4.021 13 C -0.101 4.101 14 C -0.013 4.013 15 C -0.083 4.083 16 C -0.120 4.120 17 C -0.122 4.122 18 C -0.088 4.088 19 N -0.334 5.334 20 C 0.254 3.746 21 C -0.542 4.542 22 H 0.067 0.933 23 C 0.066 3.934 24 N -0.890 5.890 25 Si 0.906 3.094 26 H -0.270 1.270 27 H -0.280 1.280 28 H -0.280 1.280 29 N -0.285 5.285 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.148 0.852 34 H 0.434 0.566 35 H 0.146 0.854 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.048 0.952 47 H 0.058 0.942 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.530 16.172 14.248 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.095 4.095 3 C -0.372 4.372 4 C 0.107 3.893 5 N -0.779 5.779 6 S 2.793 3.207 7 O -0.940 6.940 8 O -0.929 6.929 9 C -0.760 4.760 10 C -0.031 4.031 11 C -0.159 4.159 12 C -0.021 4.021 13 C -0.102 4.102 14 C -0.033 4.033 15 C -0.120 4.120 16 C -0.157 4.157 17 C -0.159 4.159 18 C -0.125 4.125 19 N -0.118 5.118 20 C 0.137 3.863 21 C -0.580 4.580 22 H 0.086 0.914 23 C -0.138 4.138 24 N -0.527 5.527 25 Si 0.733 3.267 26 H -0.194 1.194 27 H -0.206 1.206 28 H -0.205 1.205 29 N -0.110 5.110 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.165 0.835 34 H 0.272 0.728 35 H 0.163 0.837 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.099 0.901 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.057 15.377 13.678 22.101 hybrid contribution 0.755 0.074 -0.412 0.863 sum -7.303 15.450 13.266 21.634 Atomic orbital electron populations 1.20065 0.87393 1.02808 1.02153 1.21799 0.96408 0.90312 1.00981 1.20808 0.89083 1.00402 1.26909 1.17446 0.86566 0.84356 1.00977 1.52947 1.13499 1.25655 1.85798 1.01803 0.73631 0.71041 0.74273 1.93615 1.37371 1.75598 1.87414 1.93607 1.62418 1.79866 1.57001 1.30653 1.04796 1.19080 1.21500 1.20941 0.92469 0.91006 0.98692 1.21252 1.00126 1.02536 0.92031 1.19926 0.92846 0.93935 0.95439 1.19667 0.93656 1.02063 0.94812 1.20908 0.99536 0.91917 0.90919 1.20507 0.97160 1.01886 0.92472 1.21550 0.96420 0.99895 0.97868 1.21570 0.95417 1.01336 0.97611 1.20611 0.98616 1.02212 0.91052 1.49377 1.06643 1.02270 1.53517 1.19704 0.77816 0.89665 0.99163 1.21389 1.13419 1.31881 0.91315 0.91438 1.24945 0.95640 0.94871 0.98296 1.69923 1.19112 1.32659 1.31051 0.86290 0.78479 0.78354 0.83555 1.19444 1.20572 1.20547 1.77384 0.86049 1.21736 1.25849 0.91243 0.90922 0.91216 0.83452 0.72798 0.83693 0.85037 0.84499 0.90201 0.90340 0.91546 0.91182 0.91207 0.91323 0.89970 0.90085 0.93463 0.92382 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.44 36.00 0.38 -0.50 16 2 C 0.07 1.31 7.21 -82.44 -0.59 0.72 16 3 C -0.34 -6.23 8.81 -39.75 -0.35 -6.58 16 4 C 0.33 6.72 7.56 -153.40 -1.16 5.56 16 5 N -1.03 -18.17 5.86 31.11 0.18 -17.99 16 6 S 2.70 42.84 5.34 -107.50 -0.57 42.27 16 7 O -0.95 -16.24 17.43 -57.17 -1.00 -17.24 16 8 O -0.94 -16.49 15.31 -57.17 -0.88 -17.37 16 9 C -0.67 -9.23 5.65 -39.68 -0.22 -9.46 16 10 C -0.01 -0.15 8.29 -39.68 -0.33 -0.48 16 11 C -0.14 -1.47 9.61 -39.44 -0.38 -1.85 16 12 C -0.02 -0.21 5.74 -104.62 -0.60 -0.81 16 13 C -0.10 -1.11 5.74 -104.62 -0.60 -1.71 16 14 C -0.01 -0.17 9.09 -39.44 -0.36 -0.53 16 15 C -0.08 -0.71 5.67 -28.06 -0.16 -0.87 16 16 C -0.12 -0.81 5.98 -26.71 -0.16 -0.97 16 17 C -0.12 -0.80 5.98 -26.71 -0.16 -0.96 16 18 C -0.09 -0.63 5.67 -28.05 -0.16 -0.79 16 19 N -0.33 -7.65 3.60 -61.63 -0.22 -7.87 16 20 C 0.25 6.35 5.98 -5.19 -0.03 6.32 16 21 C -0.54 -14.71 9.39 -34.44 -0.32 -15.03 16 22 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 23 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 24 N -0.89 -24.57 13.29 55.43 0.74 -23.84 16 25 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 N -0.29 -6.36 12.56 33.65 0.42 -5.93 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.15 2.35 3.95 -52.49 -0.21 2.14 16 34 H 0.43 7.46 8.16 -34.48 -0.28 7.18 16 35 H 0.15 1.68 5.66 -52.49 -0.30 1.38 16 36 H 0.13 1.02 8.05 -52.49 -0.42 0.59 16 37 H 0.14 1.57 7.73 -52.49 -0.41 1.16 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 40 H 0.07 0.44 8.10 -51.92 -0.42 0.02 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 46 H 0.05 1.15 7.57 -51.93 -0.39 0.76 16 47 H 0.06 1.55 8.14 -51.93 -0.42 1.12 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 401.35 15.07 6.05 6.05 Total: -1.00 -33.51 401.35 -12.23 -45.73 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.62 Total: 6.41 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -5.31 Total: -26.26 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 1.12 Total: -55.63 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -1.87 Total: -34.60 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 42.84 SS G_CDS: -0.57 Total: 42.27 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.51 -12.23 -45.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066247993.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.979 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds