Wall clock time and date at job start Tue Mar 31 2020 05:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39773 * 125.83745 * 2 1 4 4 C 1.36172 * 107.81432 * 179.97438 * 3 2 1 5 5 N 1.39216 * 126.21891 * 180.02562 * 4 3 2 6 6 S 1.65603 * 119.99784 * 5.75592 * 5 4 3 7 7 O 1.42101 * 106.39829 * 176.68608 * 6 5 4 8 8 O 1.42097 * 106.40179 * 309.60358 * 6 5 4 9 9 C 1.76189 * 107.21849 * 63.14963 * 6 5 4 10 10 C 1.38267 * 120.10991 * 264.19440 * 9 6 5 11 11 C 1.37939 * 119.77086 * 179.90720 * 10 9 6 12 12 C 1.38907 * 120.53757 * 0.52363 * 11 10 9 13 13 C 1.37661 * 119.69206 * 359.44420 * 12 11 10 14 14 C 1.37932 * 120.11505 * 84.46849 * 9 6 5 15 15 C 1.50627 * 122.56054 * 180.80190 * 13 12 11 16 16 C 1.52732 * 110.59678 * 342.00350 * 15 13 12 17 17 C 1.53314 * 108.41390 * 51.09694 * 16 15 13 18 18 C 1.50635 * 117.75242 * 179.12859 * 12 11 10 19 19 N 1.35243 * 107.56006 * 0.02562 * 4 3 2 20 20 C 1.46500 * 126.04118 * 179.97438 * 19 4 3 21 21 C 1.50710 * 109.46742 * 269.99371 * 20 19 4 22 22 H 1.07994 * 119.99891 * 0.02562 * 21 20 19 23 23 C 1.37878 * 119.99706 * 179.97438 * 21 20 19 24 24 N 1.31520 * 120.00099 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99625 * 180.02562 * 23 21 20 26 26 H 1.48490 * 109.47511 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46664 * 120.00442 * 25 23 21 28 28 H 1.48499 * 109.46942 * 240.00221 * 25 23 21 29 29 N 1.30841 * 125.84451 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.46989 * 270.04045 * 1 2 3 31 31 H 1.08997 * 109.47455 * 30.04434 * 1 2 3 32 32 H 1.09003 * 109.46707 * 150.04693 * 1 2 3 33 33 H 1.08001 * 126.09120 * 359.95877 * 3 2 1 34 34 H 0.96995 * 119.99377 * 185.76346 * 5 4 3 35 35 H 1.07998 * 120.11817 * 0.15878 * 10 9 6 36 36 H 1.08000 * 119.72978 * 180.24185 * 11 10 9 37 37 H 1.07995 * 119.73360 * 359.97438 * 14 9 6 38 38 H 1.08996 * 109.25314 * 102.28575 * 15 13 12 39 39 H 1.08999 * 109.25066 * 221.71546 * 15 13 12 40 40 H 1.09008 * 109.67240 * 291.36771 * 16 15 13 41 41 H 1.08991 * 109.70691 * 170.85216 * 16 15 13 42 42 H 1.09000 * 109.68314 * 170.46919 * 17 16 15 43 43 H 1.09004 * 109.67814 * 49.92691 * 17 16 15 44 44 H 1.08994 * 109.25865 * 282.51277 * 18 12 11 45 45 H 1.09002 * 109.25251 * 41.94416 * 18 12 11 46 46 H 1.08994 * 109.47497 * 29.99856 * 20 19 4 47 47 H 1.09006 * 109.47275 * 150.00211 * 20 19 4 48 48 H 0.96995 * 119.99962 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1331 0.0000 4 6 3.6202 0.7118 0.0006 5 7 4.7500 1.5253 0.0013 6 16 4.5879 3.1671 0.1453 7 8 5.9053 3.6978 0.1911 8 8 3.6243 3.5615 -0.8217 9 6 3.8689 3.4839 1.7223 10 6 2.5028 3.6625 1.8386 11 6 1.9471 3.9082 3.0769 12 6 2.7501 3.9885 4.2075 13 6 4.1102 3.8100 4.0919 14 6 4.6676 3.5601 2.8443 15 6 5.0387 3.8658 5.2767 16 6 4.3630 4.5615 6.4566 17 6 2.9966 3.9056 6.6877 18 6 2.0798 4.2793 5.5248 19 7 3.6093 -0.6406 0.0004 20 6 4.7869 -1.5121 0.0003 21 6 5.1906 -1.8108 -1.4207 22 1 4.6267 -1.3929 -2.2414 23 6 6.2805 -2.6167 -1.6727 24 7 6.9676 -3.1252 -0.6732 25 14 6.7813 -2.9863 -3.4340 26 1 5.8533 -2.2988 -4.3672 27 1 8.1657 -2.5020 -3.6669 28 1 6.7237 -4.4517 -3.6678 29 7 2.2732 -1.0606 0.0005 30 1 -0.3633 0.0007 1.0277 31 1 -0.3634 0.8895 -0.5145 32 1 -0.3633 -0.8904 -0.5131 33 1 1.9903 2.1599 -0.0006 34 1 5.6319 1.1304 -0.0827 35 1 1.8725 3.6058 0.9635 36 1 0.8795 4.0438 3.1675 37 1 5.7350 3.4245 2.7522 38 1 5.3128 2.8515 5.5666 39 1 5.9387 4.4162 5.0024 40 1 4.2288 5.6195 6.2310 41 1 4.9785 4.4519 7.3494 42 1 2.5693 4.2672 7.6230 43 1 3.1120 2.8225 6.7309 44 1 1.8429 5.3417 5.5809 45 1 1.1578 3.7019 5.5940 46 1 5.6083 -1.0130 0.5142 47 1 4.5495 -2.4438 0.5139 48 1 7.7345 -3.6919 -0.8505 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066247993.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:26 Heat of formation + Delta-G solvation = -10.885400 kcal Electronic energy + Delta-G solvation = -32542.174817 eV Core-core repulsion = 28302.867455 eV Total energy + Delta-G solvation = -4239.307362 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.22171 -41.08414 -38.62554 -37.28804 -37.07349 -36.55125 -35.75193 -33.85410 -33.67491 -31.54307 -30.73586 -29.96003 -29.56090 -27.82003 -25.07996 -24.75706 -24.00061 -23.39477 -22.43679 -21.40370 -20.96194 -19.92700 -19.02548 -18.79867 -18.46719 -18.19953 -17.15695 -16.85192 -16.69877 -16.26520 -16.22608 -15.81959 -15.59525 -15.35722 -14.79449 -14.74127 -14.52405 -14.47822 -14.20032 -14.08872 -13.88881 -13.72123 -13.66485 -13.48159 -13.43834 -13.27051 -13.19912 -13.11000 -13.01369 -12.76631 -12.69296 -12.67905 -12.49724 -12.32438 -12.16269 -11.76958 -11.73845 -11.40131 -11.38369 -11.21551 -10.79069 -10.08266 -9.78581 -9.71647 -9.22244 -8.39891 -6.56785 -1.01310 -0.26397 0.26371 1.01611 1.32990 1.35243 1.41033 1.47902 1.86216 1.94209 2.28873 2.33678 2.57578 2.90799 3.08250 3.54938 3.61690 3.65557 3.76436 3.82946 4.02881 4.09198 4.13966 4.14758 4.40523 4.46733 4.50662 4.58559 4.61917 4.71079 4.73150 4.78685 4.83288 4.86435 4.94589 4.96165 4.98337 5.03546 5.06719 5.11285 5.15443 5.24226 5.26906 5.33351 5.44730 5.46398 5.49274 5.52746 5.74021 5.86845 5.91866 6.16468 6.55357 6.96499 7.15044 8.67113 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.010622 B = 0.002941 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.392450 B = 9517.610040 C = 9980.828529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.079 3.921 3 C -0.337 4.337 4 C 0.327 3.673 5 N -1.031 6.031 6 S 2.710 3.290 7 O -0.968 6.968 8 O -0.959 6.959 9 C -0.680 4.680 10 C -0.027 4.027 11 C -0.138 4.138 12 C -0.020 4.020 13 C -0.109 4.109 14 C -0.033 4.033 15 C -0.087 4.087 16 C -0.117 4.117 17 C -0.122 4.122 18 C -0.088 4.088 19 N -0.362 5.362 20 C 0.270 3.730 21 C -0.558 4.558 22 H 0.050 0.950 23 C 0.025 3.975 24 N -0.914 5.914 25 Si 0.968 3.032 26 H -0.275 1.275 27 H -0.268 1.268 28 H -0.271 1.271 29 N -0.331 5.331 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.173 0.827 34 H 0.432 0.568 35 H 0.151 0.849 36 H 0.165 0.835 37 H 0.137 0.863 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.058 0.942 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.046 0.954 47 H 0.031 0.969 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.472 17.735 15.618 25.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.087 4.087 3 C -0.370 4.370 4 C 0.101 3.899 5 N -0.781 5.781 6 S 2.805 3.195 7 O -0.959 6.959 8 O -0.949 6.949 9 C -0.772 4.772 10 C -0.047 4.047 11 C -0.157 4.157 12 C -0.020 4.020 13 C -0.110 4.110 14 C -0.053 4.053 15 C -0.124 4.124 16 C -0.155 4.155 17 C -0.159 4.159 18 C -0.124 4.124 19 N -0.146 5.146 20 C 0.151 3.849 21 C -0.596 4.596 22 H 0.068 0.932 23 C -0.177 4.177 24 N -0.552 5.552 25 Si 0.792 3.208 26 H -0.199 1.199 27 H -0.193 1.193 28 H -0.197 1.197 29 N -0.156 5.156 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.190 0.810 34 H 0.269 0.731 35 H 0.169 0.831 36 H 0.182 0.818 37 H 0.155 0.845 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.119 0.881 45 H 0.114 0.886 46 H 0.063 0.937 47 H 0.049 0.951 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.983 16.943 15.017 24.743 hybrid contribution 1.275 -0.312 -0.705 1.489 sum -8.708 16.631 14.312 23.606 Atomic orbital electron populations 1.20317 0.83412 1.04297 1.04324 1.22737 0.98714 0.89278 0.97949 1.21193 0.88266 1.01566 1.25935 1.17843 0.87928 0.83638 1.00516 1.53109 1.12969 1.25990 1.85997 1.01332 0.73119 0.70148 0.74919 1.93580 1.38613 1.75598 1.88074 1.93564 1.62614 1.79913 1.58810 1.30175 1.05701 1.21483 1.19836 1.21143 0.91827 0.91692 1.00017 1.21647 1.01839 1.01121 0.91081 1.20404 0.92542 0.92073 0.97006 1.20009 0.94762 1.01418 0.94768 1.21102 0.99758 0.92814 0.91602 1.20597 0.97130 1.02225 0.92454 1.21564 0.96714 0.99821 0.97377 1.21596 0.95218 1.00783 0.98347 1.20731 0.98874 1.03546 0.89289 1.49132 1.06476 1.02981 1.56033 1.19227 0.78834 0.89063 0.97767 1.21496 1.13813 1.32501 0.91830 0.93213 1.25713 0.95395 0.94412 1.02162 1.69994 1.19464 1.32912 1.32832 0.85351 0.78366 0.78374 0.78699 1.19939 1.19263 1.19664 1.77339 0.86038 1.23804 1.28369 0.88588 0.88161 0.90984 0.80992 0.73098 0.83148 0.81771 0.84510 0.90352 0.89972 0.91122 0.89894 0.89186 0.92298 0.88141 0.88611 0.93671 0.95062 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.56 10.44 71.24 0.74 -0.82 16 2 C 0.08 2.88 7.21 43.08 0.31 3.19 16 3 C -0.34 -12.23 8.81 22.16 0.20 -12.04 16 4 C 0.33 13.53 7.56 131.43 0.99 14.52 16 5 N -1.03 -38.14 5.86 -55.50 -0.33 -38.46 16 6 S 2.71 88.38 5.34 -56.49 -0.30 88.08 16 7 O -0.97 -34.42 17.43 -128.00 -2.23 -36.65 16 8 O -0.96 -34.02 15.31 -128.00 -1.96 -35.98 16 9 C -0.68 -18.64 5.65 22.20 0.13 -18.52 16 10 C -0.03 -0.64 8.29 22.21 0.18 -0.46 16 11 C -0.14 -2.51 9.61 22.36 0.21 -2.29 16 12 C -0.02 -0.35 5.74 -19.86 -0.11 -0.47 16 13 C -0.11 -2.26 5.74 -19.86 -0.11 -2.37 16 14 C -0.03 -0.84 9.09 22.36 0.20 -0.64 16 15 C -0.09 -1.37 5.67 29.74 0.17 -1.21 16 16 C -0.12 -1.28 5.98 30.61 0.18 -1.10 16 17 C -0.12 -1.22 5.98 30.61 0.18 -1.04 16 18 C -0.09 -0.93 5.67 29.74 0.17 -0.76 16 19 N -0.36 -17.26 3.60 -348.89 -1.26 -18.51 16 20 C 0.27 14.24 5.98 85.64 0.51 14.76 16 21 C -0.56 -31.52 9.39 25.60 0.24 -31.27 16 22 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 23 C 0.02 1.36 5.46 84.65 0.46 1.82 16 24 N -0.91 -51.49 13.29 21.45 0.28 -51.21 16 25 Si 0.97 43.67 29.54 68.60 2.03 45.69 16 26 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 28 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 29 N -0.33 -15.05 12.56 -47.44 -0.60 -15.65 16 30 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.85 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.17 5.26 3.95 -2.91 -0.01 5.25 16 34 H 0.43 15.94 8.16 -96.74 -0.79 15.15 16 35 H 0.15 3.23 5.66 -2.91 -0.02 3.22 16 36 H 0.16 1.83 8.05 -2.91 -0.02 1.81 16 37 H 0.14 3.30 7.73 -2.91 -0.02 3.27 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 40 H 0.07 0.73 8.10 -2.38 -0.02 0.71 16 41 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.06 0.72 8.10 -2.38 -0.02 0.70 16 44 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.10 0.79 8.12 -2.39 -0.02 0.77 16 46 H 0.05 2.34 7.57 -2.39 -0.02 2.32 16 47 H 0.03 1.78 8.14 -2.38 -0.02 1.76 16 48 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -74.33 401.35 0.52 -73.82 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.21 Total: 27.55 kcal Atomic # 6 Polarization: -43.34 SS G_CDS: 4.66 Total: -38.68 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -1.89 Total: -123.83 kcal Atomic # 8 Polarization: -68.44 SS G_CDS: -4.19 Total: -72.63 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 88.38 SS G_CDS: -0.30 Total: 88.08 kcal Total: -74.33 0.52 -73.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066247993.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.933 kcal (2) G-P(sol) polarization free energy of solvation -74.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds