Wall clock time and date at job start Tue Mar 31 2020 06:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47567 * 2 1 4 4 C 1.50700 * 109.47224 * 120.00187 * 2 1 3 5 5 H 1.08004 * 120.00295 * 119.99859 * 4 2 1 6 6 C 1.37872 * 119.99916 * 300.00002 * 4 2 1 7 7 N 1.31513 * 120.00463 * 179.97438 * 6 4 2 8 8 Si 1.86807 * 120.00080 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46917 * 89.99915 * 8 6 4 10 10 H 1.48498 * 109.46974 * 210.00040 * 8 6 4 11 11 H 1.48504 * 109.46950 * 330.00080 * 8 6 4 12 12 S 1.81399 * 109.47029 * 239.99956 * 2 1 3 13 13 C 1.76203 * 103.00056 * 169.60661 * 12 2 1 14 14 C 1.38781 * 120.10356 * 4.48961 * 13 12 2 15 15 C 1.38203 * 119.99065 * 179.97438 * 14 13 12 16 16 C 1.38299 * 120.19447 * 0.02562 * 15 14 13 17 17 C 1.38248 * 120.21629 * 359.67784 * 16 15 14 18 18 C 1.38650 * 120.00138 * 0.59832 * 17 16 15 19 19 N 1.40141 * 120.09724 * 179.70434 * 18 17 16 20 20 C 1.34777 * 120.00522 * 34.52027 * 19 18 17 21 21 O 1.21300 * 119.99307 * 355.75704 * 20 19 18 22 22 C 1.50700 * 120.00372 * 175.76407 * 20 19 18 23 23 N 1.46501 * 109.47022 * 179.97438 * 22 20 19 24 24 C 1.47195 * 119.78579 * 89.99869 * 23 22 20 25 25 C 1.52981 * 108.66262 * 108.04054 * 24 23 22 26 26 C 1.51781 * 110.88406 * 86.47126 * 25 24 23 27 27 C 1.51791 * 113.69754 * 293.06607 * 26 25 24 28 28 C 1.52812 * 110.88375 * 66.88586 * 27 26 25 29 29 C 1.33369 * 119.78963 * 269.97778 * 23 22 20 30 30 O 1.21288 * 119.88483 * 0.28285 * 29 23 22 31 31 H 1.09001 * 109.47121 * 305.14900 * 1 2 3 32 32 H 1.09003 * 109.47244 * 65.14645 * 1 2 3 33 33 H 1.09000 * 109.47436 * 185.14261 * 1 2 3 34 34 H 0.96998 * 120.00330 * 179.97438 * 7 6 4 35 35 H 1.07999 * 120.00865 * 359.97438 * 14 13 12 36 36 H 1.08001 * 119.90362 * 179.97438 * 15 14 13 37 37 H 1.08002 * 119.89046 * 179.97438 * 16 15 14 38 38 H 1.07999 * 120.00414 * 180.29997 * 17 16 15 39 39 H 0.97007 * 120.00130 * 214.52295 * 19 18 17 40 40 H 1.09001 * 109.47080 * 59.99888 * 22 20 19 41 41 H 1.09000 * 109.47104 * 299.99860 * 22 20 19 42 42 H 1.09006 * 109.60405 * 348.28894 * 24 23 22 43 43 H 1.08998 * 109.60619 * 227.79780 * 24 23 22 44 44 H 1.09002 * 109.19746 * 326.10557 * 25 24 23 45 45 H 1.09008 * 109.19315 * 206.82849 * 25 24 23 46 46 H 1.08991 * 108.61588 * 54.11088 * 26 25 24 47 47 H 1.08999 * 108.61559 * 172.02021 * 26 25 24 48 48 H 1.08999 * 109.21972 * 187.06234 * 27 26 25 49 49 H 1.08994 * 109.22280 * 306.40550 * 27 26 25 50 50 H 1.09003 * 109.69531 * 155.29654 * 28 27 26 51 51 H 1.08995 * 109.83104 * 34.73657 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9772 1.9953 3.9071 11 1 0.8491 2.1773 1.4923 12 16 2.1346 -0.8551 -1.4811 13 6 3.8588 -0.4923 -1.4722 14 6 4.4169 0.2098 -0.4131 15 6 5.7697 0.4926 -0.4082 16 6 6.5707 0.0784 -1.4568 17 6 6.0246 -0.6268 -2.5131 18 6 4.6675 -0.9103 -2.5295 19 7 4.1106 -1.6197 -3.6022 20 6 4.8244 -2.5849 -4.2149 21 8 5.9751 -2.7875 -3.8891 22 6 4.1929 -3.4123 -5.3047 23 7 5.1673 -4.3844 -5.8065 24 6 5.2583 -5.7158 -5.1854 25 6 4.6801 -6.7487 -6.1546 26 6 5.7405 -7.2303 -7.1280 27 6 6.2146 -6.1588 -8.0929 28 6 6.9724 -5.0567 -7.3538 29 6 5.9659 -4.0575 -6.8235 30 8 5.8858 -2.9560 -7.3248 31 1 -0.3633 0.5916 0.8403 32 1 -0.3634 0.4319 -0.9325 33 1 -0.3634 -1.0235 0.0921 34 1 1.9031 -0.5280 4.4375 35 1 3.7943 0.5351 0.4071 36 1 6.2025 1.0394 0.4164 37 1 7.6272 0.3024 -1.4482 38 1 6.6541 -0.9529 -3.3278 39 1 3.2115 -1.4160 -3.9039 40 1 3.8778 -2.7605 -6.1195 41 1 3.3264 -3.9391 -4.9051 42 1 4.6876 -5.7259 -4.2568 43 1 6.3021 -5.9523 -4.9786 44 1 3.8600 -6.2968 -6.7126 45 1 4.3012 -7.5992 -5.5877 46 1 6.5976 -7.5899 -6.5589 47 1 5.3327 -8.0612 -7.7036 48 1 6.8754 -6.6096 -8.8333 49 1 5.3524 -5.7251 -8.5994 50 1 7.6571 -4.5580 -8.0399 51 1 7.5338 -5.4865 -6.5242 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066801108.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:15 Heat of formation + Delta-G solvation = -42.174517 kcal Electronic energy + Delta-G solvation = -32173.296189 eV Core-core repulsion = 27970.746461 eV Total energy + Delta-G solvation = -4202.549728 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.96913 -39.88360 -37.96423 -36.97954 -34.98259 -34.62751 -34.16924 -31.43524 -31.31326 -30.47891 -30.16353 -28.39460 -26.13976 -25.39624 -24.24451 -22.82909 -22.42052 -21.44819 -20.99990 -20.29008 -19.13614 -17.76797 -17.54171 -17.23415 -16.93366 -16.75946 -16.31116 -15.45312 -15.31937 -15.23937 -14.62589 -14.48211 -14.40668 -14.28039 -13.96038 -13.77432 -13.75147 -13.60894 -13.29020 -12.99748 -12.88062 -12.63718 -12.50828 -12.43833 -12.12388 -12.05229 -11.79279 -11.48098 -11.30285 -11.26142 -11.18049 -11.02707 -10.98863 -10.74900 -10.50084 -10.19488 -9.96977 -9.88878 -9.79092 -9.55366 -9.14154 -9.04474 -8.91164 -8.77937 -7.91871 -6.61569 -6.27699 -4.32200 1.60896 1.87355 2.30991 2.43048 2.61934 2.68510 3.10641 3.19320 3.24271 3.27505 3.38059 4.11605 4.18964 4.23271 4.36146 4.38759 4.44592 4.64049 4.81153 4.87626 4.98937 5.00311 5.04469 5.10174 5.16412 5.31350 5.40267 5.44038 5.50884 5.51573 5.58406 5.66580 5.72220 5.75141 5.87196 5.92234 5.97342 6.03961 6.09172 6.15116 6.16324 6.39907 6.53513 6.64249 6.74748 6.89375 6.93848 7.05471 7.11478 7.29582 7.44818 7.50114 7.96643 8.18067 8.19443 8.76513 9.27202 10.82686 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.002174 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.999171 B =12876.036971 C =13581.911497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.051 3.949 3 H 0.050 0.950 4 C -0.523 4.523 5 H 0.087 0.913 6 C 0.081 3.919 7 N -0.884 5.884 8 Si 0.880 3.120 9 H -0.275 1.275 10 H -0.292 1.292 11 H -0.265 1.265 12 S -0.158 6.158 13 C -0.082 4.082 14 C -0.097 4.097 15 C -0.119 4.119 16 C -0.122 4.122 17 C -0.113 4.113 18 C 0.144 3.856 19 N -0.661 5.661 20 C 0.498 3.502 21 O -0.516 6.516 22 C 0.094 3.906 23 N -0.589 5.589 24 C 0.112 3.888 25 C -0.141 4.141 26 C -0.123 4.123 27 C -0.113 4.113 28 C -0.136 4.136 29 C 0.523 3.477 30 O -0.548 6.548 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.268 0.732 35 H 0.156 0.844 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.134 0.866 39 H 0.410 0.590 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.075 0.925 49 H 0.066 0.934 50 H 0.097 0.903 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.925 -9.374 -19.899 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 H 0.068 0.932 4 C -0.561 4.561 5 H 0.105 0.895 6 C -0.124 4.124 7 N -0.520 5.520 8 Si 0.709 3.291 9 H -0.202 1.202 10 H -0.219 1.219 11 H -0.190 1.190 12 S 0.088 5.912 13 C -0.197 4.197 14 C -0.121 4.121 15 C -0.140 4.140 16 C -0.143 4.143 17 C -0.134 4.134 18 C 0.044 3.956 19 N -0.307 5.307 20 C 0.284 3.716 21 O -0.391 6.391 22 C -0.033 4.033 23 N -0.320 5.320 24 C -0.010 4.010 25 C -0.179 4.179 26 C -0.160 4.160 27 C -0.150 4.150 28 C -0.176 4.176 29 C 0.311 3.689 30 O -0.425 6.425 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.173 0.827 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.152 0.848 39 H 0.247 0.753 40 H 0.134 0.866 41 H 0.131 0.869 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.085 0.915 50 H 0.115 0.885 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.915 -9.683 -20.542 23.235 hybrid contribution -0.340 1.526 1.349 2.066 sum 4.576 -8.156 -19.192 21.349 Atomic orbital electron populations 1.21983 0.95897 1.02200 0.99653 1.21418 0.95228 0.97536 0.93539 0.93169 1.21052 1.33196 1.14296 0.87560 0.89481 1.24977 0.95293 0.96522 0.95628 1.69862 1.44309 1.39747 0.98077 0.86963 0.80988 0.83699 0.77447 1.20162 1.21949 1.19023 1.84266 0.99470 1.70377 1.37134 1.21469 0.97777 1.04328 0.96137 1.21680 0.95916 0.97229 0.97290 1.21094 0.93670 1.00781 0.98419 1.20961 0.99425 0.99423 0.94530 1.21010 0.93299 0.99033 1.00074 1.17171 0.92563 0.97958 0.87871 1.43411 1.19212 1.35724 1.32359 1.21220 0.87057 0.80183 0.83136 1.90684 1.16805 1.67974 1.63623 1.21326 0.92047 0.92952 0.96929 1.47405 1.37167 1.14283 1.33194 1.21888 1.02702 0.80420 0.96025 1.21830 0.98940 0.99165 0.97968 1.21189 0.99073 0.98220 0.97554 1.21185 1.00373 0.95359 0.98127 1.21940 0.97302 0.96563 1.01806 1.20555 0.81190 0.88163 0.78974 1.90719 1.69487 1.23063 1.59271 0.92721 0.93911 0.91741 0.92179 0.82692 0.86167 0.86379 0.84822 0.75303 0.86614 0.86889 0.89352 0.90092 0.91059 0.90232 0.91629 0.91570 0.90659 0.91545 0.88483 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.61 37.16 0.32 -2.45 16 2 C 0.05 1.13 1.61 -27.88 -0.04 1.08 16 3 H 0.05 1.12 6.40 -51.92 -0.33 0.79 16 4 C -0.52 -13.52 7.06 -34.44 -0.24 -13.76 16 5 H 0.09 2.55 7.96 -52.48 -0.42 2.13 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 7 N -0.88 -25.39 13.96 55.43 0.77 -24.61 16 8 Si 0.88 20.18 24.32 -169.99 -4.13 16.05 16 9 H -0.27 -6.16 6.91 56.52 0.39 -5.77 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -5.79 6.53 56.52 0.37 -5.42 16 12 S -0.16 -3.05 20.11 -107.50 -2.16 -5.22 16 13 C -0.08 -1.61 6.11 -38.90 -0.24 -1.85 16 14 C -0.10 -1.97 8.85 -39.39 -0.35 -2.32 16 15 C -0.12 -2.12 10.04 -39.57 -0.40 -2.51 16 16 C -0.12 -2.03 10.04 -39.55 -0.40 -2.43 16 17 C -0.11 -2.00 8.70 -39.43 -0.34 -2.34 16 18 C 0.14 2.60 6.32 -83.43 -0.53 2.07 16 19 N -0.66 -9.88 5.02 -9.70 -0.05 -9.93 16 20 C 0.50 7.25 7.74 -10.98 -0.09 7.16 16 21 O -0.52 -9.14 13.85 5.54 0.08 -9.07 16 22 C 0.09 0.99 5.80 -5.19 -0.03 0.96 16 23 N -0.59 -6.09 1.94 -174.60 -0.34 -6.42 16 24 C 0.11 0.85 5.88 -3.67 -0.02 0.83 16 25 C -0.14 -0.76 5.73 -27.36 -0.16 -0.92 16 26 C -0.12 -0.60 5.29 -27.96 -0.15 -0.75 16 27 C -0.11 -0.67 5.64 -27.44 -0.15 -0.83 16 28 C -0.14 -1.11 5.56 -27.63 -0.15 -1.27 16 29 C 0.52 6.24 6.78 -11.26 -0.08 6.16 16 30 O -0.55 -8.75 16.60 5.55 0.09 -8.65 16 31 H 0.05 1.13 3.42 -51.93 -0.18 0.95 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.16 3.46 4.82 -52.49 -0.25 3.20 16 36 H 0.12 1.88 8.06 -52.49 -0.42 1.45 16 37 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 38 H 0.13 2.41 6.19 -52.49 -0.33 2.09 16 39 H 0.41 5.22 7.97 -40.82 -0.33 4.89 16 40 H 0.12 1.18 7.38 -51.93 -0.38 0.80 16 41 H 0.11 0.85 8.03 -51.93 -0.42 0.43 16 42 H 0.09 0.66 7.92 -51.93 -0.41 0.25 16 43 H 0.08 0.60 6.71 -51.93 -0.35 0.25 16 44 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16 45 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 46 H 0.06 0.29 7.89 -51.93 -0.41 -0.12 16 47 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.07 0.46 7.86 -51.93 -0.41 0.05 16 50 H 0.10 0.79 8.13 -51.93 -0.42 0.37 16 51 H 0.09 0.66 6.79 -51.93 -0.35 0.30 16 LS Contribution 408.21 15.07 6.15 6.15 Total: -1.00 -33.29 408.21 -10.27 -43.56 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -7.54 Total: 9.24 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -3.14 Total: -11.09 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.39 Total: -40.97 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: 0.17 Total: -17.72 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.13 Total: 16.05 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.16 Total: -5.22 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.29 -10.27 -43.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066801108.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.384 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds