Wall clock time and date at job start Tue Mar 31 2020 06:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47567 * 2 1 4 4 C 1.50700 * 109.47224 * 120.00187 * 2 1 3 5 5 H 1.08004 * 120.00295 * 119.99859 * 4 2 1 6 6 C 1.37872 * 119.99916 * 300.00002 * 4 2 1 7 7 N 1.31513 * 120.00463 * 179.97438 * 6 4 2 8 8 Si 1.86807 * 120.00080 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46917 * 89.99915 * 8 6 4 10 10 H 1.48498 * 109.46974 * 210.00040 * 8 6 4 11 11 H 1.48504 * 109.46950 * 330.00080 * 8 6 4 12 12 S 1.81399 * 109.47029 * 239.99956 * 2 1 3 13 13 C 1.76203 * 103.00056 * 169.60661 * 12 2 1 14 14 C 1.38781 * 120.10356 * 4.48961 * 13 12 2 15 15 C 1.38203 * 119.99065 * 179.97438 * 14 13 12 16 16 C 1.38299 * 120.19447 * 0.02562 * 15 14 13 17 17 C 1.38248 * 120.21629 * 359.67784 * 16 15 14 18 18 C 1.38650 * 120.00138 * 0.59832 * 17 16 15 19 19 N 1.40141 * 120.09724 * 179.70434 * 18 17 16 20 20 C 1.34777 * 120.00522 * 34.52027 * 19 18 17 21 21 O 1.21300 * 119.99307 * 355.75704 * 20 19 18 22 22 C 1.50700 * 120.00372 * 175.76407 * 20 19 18 23 23 N 1.46501 * 109.47022 * 179.97438 * 22 20 19 24 24 C 1.47195 * 119.78579 * 89.99869 * 23 22 20 25 25 C 1.52981 * 108.66262 * 108.04054 * 24 23 22 26 26 C 1.51781 * 110.88406 * 86.47126 * 25 24 23 27 27 C 1.51791 * 113.69754 * 293.06607 * 26 25 24 28 28 C 1.52812 * 110.88375 * 66.88586 * 27 26 25 29 29 C 1.33369 * 119.78963 * 269.97778 * 23 22 20 30 30 O 1.21288 * 119.88483 * 0.28285 * 29 23 22 31 31 H 1.09001 * 109.47121 * 305.14900 * 1 2 3 32 32 H 1.09003 * 109.47244 * 65.14645 * 1 2 3 33 33 H 1.09000 * 109.47436 * 185.14261 * 1 2 3 34 34 H 0.96998 * 120.00330 * 179.97438 * 7 6 4 35 35 H 1.07999 * 120.00865 * 359.97438 * 14 13 12 36 36 H 1.08001 * 119.90362 * 179.97438 * 15 14 13 37 37 H 1.08002 * 119.89046 * 179.97438 * 16 15 14 38 38 H 1.07999 * 120.00414 * 180.29997 * 17 16 15 39 39 H 0.97007 * 120.00130 * 214.52295 * 19 18 17 40 40 H 1.09001 * 109.47080 * 59.99888 * 22 20 19 41 41 H 1.09000 * 109.47104 * 299.99860 * 22 20 19 42 42 H 1.09006 * 109.60405 * 348.28894 * 24 23 22 43 43 H 1.08998 * 109.60619 * 227.79780 * 24 23 22 44 44 H 1.09002 * 109.19746 * 326.10557 * 25 24 23 45 45 H 1.09008 * 109.19315 * 206.82849 * 25 24 23 46 46 H 1.08991 * 108.61588 * 54.11088 * 26 25 24 47 47 H 1.08999 * 108.61559 * 172.02021 * 26 25 24 48 48 H 1.08999 * 109.21972 * 187.06234 * 27 26 25 49 49 H 1.08994 * 109.22280 * 306.40550 * 27 26 25 50 50 H 1.09003 * 109.69531 * 155.29654 * 28 27 26 51 51 H 1.08995 * 109.83104 * 34.73657 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9772 1.9953 3.9071 11 1 0.8491 2.1773 1.4923 12 16 2.1346 -0.8551 -1.4811 13 6 3.8588 -0.4923 -1.4722 14 6 4.4169 0.2098 -0.4131 15 6 5.7697 0.4926 -0.4082 16 6 6.5707 0.0784 -1.4568 17 6 6.0246 -0.6268 -2.5131 18 6 4.6675 -0.9103 -2.5295 19 7 4.1106 -1.6197 -3.6022 20 6 4.8244 -2.5849 -4.2149 21 8 5.9751 -2.7875 -3.8891 22 6 4.1929 -3.4123 -5.3047 23 7 5.1673 -4.3844 -5.8065 24 6 5.2583 -5.7158 -5.1854 25 6 4.6801 -6.7487 -6.1546 26 6 5.7405 -7.2303 -7.1280 27 6 6.2146 -6.1588 -8.0929 28 6 6.9724 -5.0567 -7.3538 29 6 5.9659 -4.0575 -6.8235 30 8 5.8858 -2.9560 -7.3248 31 1 -0.3633 0.5916 0.8403 32 1 -0.3634 0.4319 -0.9325 33 1 -0.3634 -1.0235 0.0921 34 1 1.9031 -0.5280 4.4375 35 1 3.7943 0.5351 0.4071 36 1 6.2025 1.0394 0.4164 37 1 7.6272 0.3024 -1.4482 38 1 6.6541 -0.9529 -3.3278 39 1 3.2115 -1.4160 -3.9039 40 1 3.8778 -2.7605 -6.1195 41 1 3.3264 -3.9391 -4.9051 42 1 4.6876 -5.7259 -4.2568 43 1 6.3021 -5.9523 -4.9786 44 1 3.8600 -6.2968 -6.7126 45 1 4.3012 -7.5992 -5.5877 46 1 6.5976 -7.5899 -6.5589 47 1 5.3327 -8.0612 -7.7036 48 1 6.8754 -6.6096 -8.8333 49 1 5.3524 -5.7251 -8.5994 50 1 7.6571 -4.5580 -8.0399 51 1 7.5338 -5.4865 -6.5242 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066801108.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:14 Heat of formation + Delta-G solvation = -61.734347 kcal Electronic energy + Delta-G solvation = -32174.144367 eV Core-core repulsion = 27970.746461 eV Total energy + Delta-G solvation = -4203.397906 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.95889 -41.00848 -39.30475 -37.73481 -36.32368 -35.78009 -35.58596 -33.24653 -32.06069 -31.94499 -31.30473 -29.39847 -27.27465 -26.87587 -24.94109 -24.23287 -23.89919 -22.98420 -21.73114 -21.34686 -20.01542 -19.00898 -18.90978 -18.39119 -18.28935 -17.93930 -17.50568 -17.15846 -16.46929 -16.24414 -16.04283 -15.58341 -15.33051 -15.24180 -15.10146 -15.06049 -14.82348 -14.57868 -14.41040 -14.37720 -14.21050 -14.05912 -13.64443 -13.60116 -13.22980 -13.05535 -12.98849 -12.93972 -12.63434 -12.44350 -12.39524 -12.10700 -11.75696 -11.62537 -11.60797 -11.52144 -11.48177 -11.39583 -11.11873 -10.84834 -10.83015 -10.79853 -10.54263 -9.82766 -9.33774 -8.35795 -8.11503 -6.41883 0.19852 0.39237 0.81011 1.28600 1.34518 1.43084 1.43413 1.49215 1.68334 1.80897 2.23490 2.26295 2.78914 2.98947 3.46213 3.57229 3.85015 3.90241 3.95328 3.97595 4.11336 4.16099 4.24103 4.31976 4.34410 4.37898 4.44513 4.46393 4.51992 4.54266 4.56937 4.59816 4.60336 4.82315 4.87637 4.89343 4.97087 5.02773 5.12519 5.21604 5.25176 5.29023 5.29255 5.30892 5.37798 5.38937 5.47049 5.48515 5.60085 6.01955 6.11679 6.28945 6.32300 6.62389 6.98301 7.10038 7.20618 8.80606 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.002174 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.999171 B =12876.036971 C =13581.911497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.041 3.959 3 H 0.049 0.951 4 C -0.512 4.512 5 H 0.040 0.960 6 C 0.027 3.973 7 N -0.936 5.936 8 Si 0.939 3.061 9 H -0.261 1.261 10 H -0.298 1.298 11 H -0.245 1.245 12 S -0.126 6.126 13 C -0.107 4.107 14 C -0.119 4.119 15 C -0.124 4.124 16 C -0.111 4.111 17 C -0.121 4.121 18 C 0.145 3.855 19 N -0.657 5.657 20 C 0.496 3.504 21 O -0.550 6.550 22 C 0.097 3.903 23 N -0.587 5.587 24 C 0.106 3.894 25 C -0.133 4.133 26 C -0.122 4.122 27 C -0.107 4.107 28 C -0.132 4.132 29 C 0.513 3.487 30 O -0.598 6.598 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.269 0.731 35 H 0.130 0.870 36 H 0.139 0.861 37 H 0.151 0.849 38 H 0.132 0.868 39 H 0.421 0.579 40 H 0.120 0.880 41 H 0.149 0.851 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.096 0.904 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.092 0.908 49 H 0.055 0.945 50 H 0.093 0.907 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.292 -9.957 -21.753 24.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.088 4.088 3 H 0.067 0.933 4 C -0.550 4.550 5 H 0.058 0.942 6 C -0.173 4.173 7 N -0.575 5.575 8 Si 0.765 3.235 9 H -0.186 1.186 10 H -0.226 1.226 11 H -0.169 1.169 12 S 0.119 5.881 13 C -0.222 4.222 14 C -0.143 4.143 15 C -0.144 4.144 16 C -0.132 4.132 17 C -0.143 4.143 18 C 0.044 3.956 19 N -0.304 5.304 20 C 0.284 3.716 21 O -0.427 6.427 22 C -0.030 4.030 23 N -0.318 5.318 24 C -0.015 4.015 25 C -0.172 4.172 26 C -0.159 4.159 27 C -0.145 4.145 28 C -0.172 4.172 29 C 0.303 3.697 30 O -0.479 6.479 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.147 0.853 36 H 0.157 0.843 37 H 0.168 0.832 38 H 0.150 0.850 39 H 0.259 0.741 40 H 0.138 0.862 41 H 0.166 0.834 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.115 0.885 46 H 0.093 0.907 47 H 0.099 0.901 48 H 0.111 0.889 49 H 0.074 0.926 50 H 0.112 0.888 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.257 -10.301 -22.422 25.040 hybrid contribution 0.013 1.623 1.873 2.479 sum 4.270 -8.678 -20.549 22.711 Atomic orbital electron populations 1.21913 0.93823 1.02366 1.01317 1.21345 0.96929 0.97242 0.93255 0.93279 1.21037 1.31862 1.12645 0.89484 0.94208 1.25765 0.96767 0.99612 0.95160 1.70013 1.46668 1.42073 0.98723 0.85993 0.79662 0.80140 0.77661 1.18638 1.22598 1.16904 1.83923 0.99201 1.70332 1.34607 1.21604 0.98295 1.05445 0.96850 1.21574 0.96969 0.98676 0.97119 1.21311 0.92832 1.00871 0.99426 1.21293 1.00862 0.97759 0.93279 1.21161 0.93299 0.99325 1.00486 1.17279 0.92660 0.97490 0.88175 1.43458 1.19766 1.35568 1.31589 1.22005 0.86638 0.79770 0.83230 1.90661 1.18366 1.68859 1.64819 1.21456 0.92748 0.93084 0.95664 1.47600 1.36549 1.15054 1.32549 1.22123 1.03164 0.79598 0.96652 1.21780 0.98845 0.98861 0.97667 1.21197 0.99279 0.98056 0.97400 1.21182 1.00021 0.94835 0.98439 1.21988 0.96611 0.96367 1.02257 1.21270 0.81486 0.88100 0.78860 1.90686 1.71052 1.25204 1.60978 0.93065 0.90530 0.92045 0.92225 0.85269 0.84268 0.83152 0.85010 0.74065 0.86167 0.83390 0.89174 0.89942 0.91473 0.88527 0.90739 0.90148 0.88903 0.92649 0.88825 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 8.61 71.98 0.62 -4.52 16 2 C 0.04 1.79 1.61 29.85 0.05 1.84 16 3 H 0.05 2.16 6.40 -2.39 -0.02 2.14 16 4 C -0.51 -27.17 7.06 25.60 0.18 -26.99 16 5 H 0.04 2.44 7.96 -2.91 -0.02 2.42 16 6 C 0.03 1.49 5.45 84.65 0.46 1.95 16 7 N -0.94 -55.70 13.96 21.45 0.30 -55.40 16 8 Si 0.94 41.47 24.32 68.60 1.67 43.14 16 9 H -0.26 -10.87 6.91 99.48 0.69 -10.18 16 10 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 11 H -0.25 -9.94 6.53 99.48 0.65 -9.29 16 12 S -0.13 -4.79 20.11 -56.49 -1.14 -5.93 16 13 C -0.11 -4.22 6.11 22.71 0.14 -4.08 16 14 C -0.12 -4.94 8.85 22.39 0.20 -4.74 16 15 C -0.12 -4.38 10.04 22.28 0.22 -4.16 16 16 C -0.11 -3.57 10.04 22.29 0.22 -3.35 16 17 C -0.12 -4.25 8.70 22.37 0.19 -4.05 16 18 C 0.14 5.18 6.32 38.22 0.24 5.42 16 19 N -0.66 -19.21 5.02 -303.00 -1.52 -20.73 16 20 C 0.50 14.12 7.74 87.66 0.68 14.79 16 21 O -0.55 -19.41 13.85 -3.09 -0.04 -19.46 16 22 C 0.10 1.92 5.80 85.63 0.50 2.42 16 23 N -0.59 -11.50 1.94 -825.49 -1.60 -13.11 16 24 C 0.11 1.42 5.88 86.24 0.51 1.93 16 25 C -0.13 -1.11 5.73 30.19 0.17 -0.93 16 26 C -0.12 -0.84 5.29 29.80 0.16 -0.69 16 27 C -0.11 -1.06 5.64 30.13 0.17 -0.89 16 28 C -0.13 -2.03 5.56 30.01 0.17 -1.86 16 29 C 0.51 12.03 6.78 88.10 0.60 12.63 16 30 O -0.60 -19.38 16.60 -3.05 -0.05 -19.43 16 31 H 0.05 1.98 3.42 -2.39 -0.01 1.97 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.13 5.99 4.82 -2.91 -0.01 5.97 16 36 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 37 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 38 H 0.13 4.72 6.19 -2.91 -0.02 4.70 16 39 H 0.42 10.24 7.97 -92.70 -0.74 9.50 16 40 H 0.12 2.34 7.38 -2.39 -0.02 2.32 16 41 H 0.15 1.86 8.03 -2.39 -0.02 1.84 16 42 H 0.09 1.18 7.92 -2.38 -0.02 1.16 16 43 H 0.08 1.09 6.71 -2.39 -0.02 1.07 16 44 H 0.07 0.64 8.05 -2.39 -0.02 0.63 16 45 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 46 H 0.07 0.42 7.89 -2.39 -0.02 0.40 16 47 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 48 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.05 0.69 7.86 -2.39 -0.02 0.67 16 50 H 0.09 1.48 8.13 -2.39 -0.02 1.46 16 51 H 0.10 1.32 6.79 -2.39 -0.02 1.31 16 Total: -1.00 -75.60 408.21 3.24 -72.36 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: 0.15 Total: 33.83 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 5.48 Total: -15.27 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -2.83 Total: -89.24 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -0.09 Total: -38.89 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 1.67 Total: 43.14 kcal Atomic # 16 Polarization: -4.79 SS G_CDS: -1.14 Total: -5.93 kcal Total: -75.60 3.24 -72.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066801108.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.624 kcal (2) G-P(sol) polarization free energy of solvation -75.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds