Wall clock time and date at job start Tue Mar 31 2020 06:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46575 * 2 1 4 4 C 1.50699 * 109.47397 * 240.00359 * 2 1 3 5 5 H 1.07998 * 119.99949 * 240.00288 * 4 2 1 6 6 C 1.37882 * 119.99770 * 59.99265 * 4 2 1 7 7 N 1.31507 * 120.00056 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99533 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47323 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47191 * 120.00477 * 8 6 4 11 11 H 1.48512 * 109.46959 * 240.00200 * 8 6 4 12 12 S 1.81396 * 109.47315 * 119.99821 * 2 1 3 13 13 C 1.76199 * 103.00216 * 286.11319 * 12 2 1 14 14 C 1.38785 * 120.10552 * 0.16138 * 13 12 2 15 15 C 1.38197 * 119.98834 * 180.27713 * 14 13 12 16 16 C 1.38292 * 120.20022 * 359.71000 * 15 14 13 17 17 C 1.38249 * 120.21333 * 359.97438 * 16 15 14 18 18 C 1.38654 * 120.00724 * 0.02562 * 17 16 15 19 19 N 1.40137 * 120.10489 * 180.02562 * 18 17 16 20 20 C 1.34784 * 119.99637 * 33.75833 * 19 18 17 21 21 O 1.21295 * 120.00006 * 354.74748 * 20 19 18 22 22 C 1.50698 * 120.00099 * 174.75103 * 20 19 18 23 23 N 1.46493 * 109.47101 * 179.97438 * 22 20 19 24 24 C 1.47202 * 119.78517 * 89.99878 * 23 22 20 25 25 C 1.52986 * 108.66201 * 108.04129 * 24 23 22 26 26 C 1.51780 * 110.88246 * 86.46807 * 25 24 23 27 27 C 1.51790 * 113.70384 * 293.06241 * 26 25 24 28 28 C 1.52818 * 110.87515 * 66.88722 * 27 26 25 29 29 C 1.33371 * 119.79153 * 269.97593 * 23 22 20 30 30 O 1.21278 * 119.88775 * 0.28779 * 29 23 22 31 31 H 1.08997 * 109.47403 * 64.13657 * 1 2 3 32 32 H 1.08997 * 109.46900 * 184.13463 * 1 2 3 33 33 H 1.08996 * 109.46993 * 304.12917 * 1 2 3 34 34 H 0.96999 * 119.99765 * 179.97438 * 7 6 4 35 35 H 1.08003 * 120.00833 * 359.96125 * 14 13 12 36 36 H 1.08000 * 119.89865 * 179.73937 * 15 14 13 37 37 H 1.08006 * 119.89750 * 180.02562 * 16 15 14 38 38 H 1.08003 * 120.00381 * 179.97438 * 17 16 15 39 39 H 0.96996 * 120.00478 * 213.75956 * 19 18 17 40 40 H 1.09006 * 109.47104 * 59.99735 * 22 20 19 41 41 H 1.08999 * 109.46933 * 299.99828 * 22 20 19 42 42 H 1.08998 * 109.60430 * 348.29384 * 24 23 22 43 43 H 1.08996 * 109.60769 * 227.79109 * 24 23 22 44 44 H 1.09002 * 109.19683 * 326.11080 * 25 24 23 45 45 H 1.08997 * 109.19747 * 206.83325 * 25 24 23 46 46 H 1.08998 * 108.61334 * 54.11774 * 26 25 24 47 47 H 1.09005 * 108.61711 * 172.01796 * 26 25 24 48 48 H 1.09003 * 109.22456 * 187.06191 * 27 26 25 49 49 H 1.08999 * 109.22515 * 306.41224 * 27 26 25 50 50 H 1.09005 * 109.69067 * 155.29654 * 28 27 26 51 51 H 1.09000 * 109.83036 * 34.74366 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9434 0.8302 -2.6033 8 14 2.3214 -1.1202 -4.0079 9 1 3.1456 -2.2874 -3.6038 10 1 1.1662 -1.5865 -4.8161 11 1 3.1466 -0.1870 -4.8165 12 16 2.1347 -0.8551 1.4811 13 6 1.8177 0.3071 2.7670 14 6 1.2287 1.5286 2.4717 15 6 0.9863 2.4406 3.4813 16 6 1.3235 2.1379 4.7879 17 6 1.9046 0.9210 5.0923 18 6 2.1517 -0.0005 4.0862 19 7 2.7402 -1.2349 4.3926 20 6 2.4714 -1.8362 5.5686 21 8 1.7973 -1.2667 6.4008 22 6 3.0084 -3.2159 5.8495 23 7 2.5806 -3.6441 7.1835 24 6 1.3111 -4.3713 7.3460 25 6 1.6226 -5.8333 7.6715 26 6 1.8190 -6.0253 9.1642 27 6 3.0557 -5.3355 9.7108 28 6 2.9143 -3.8163 9.6256 29 6 3.3441 -3.3730 8.2430 30 8 4.3859 -2.7691 8.0985 31 1 -0.3634 0.4483 -0.9247 32 1 -0.3633 -1.0250 0.0741 33 1 -0.3633 0.5766 0.8506 34 1 0.7093 1.1618 -3.4843 35 1 0.9644 1.7684 1.4524 36 1 0.5317 3.3924 3.2493 37 1 1.1315 2.8542 5.5732 38 1 2.1670 0.6883 6.1138 39 1 3.3410 -1.6565 3.7585 40 1 4.0974 -3.1978 5.8058 41 1 2.6264 -3.9132 5.1038 42 1 0.7374 -4.3168 6.4209 43 1 0.7382 -3.9293 8.1611 44 1 2.5320 -6.1309 7.1493 45 1 0.7961 -6.4593 7.3352 46 1 0.9441 -5.6340 9.6834 47 1 1.8963 -7.0929 9.3706 48 1 3.1951 -5.6216 10.7533 49 1 3.9258 -5.6488 9.1340 50 1 3.5502 -3.3456 10.3753 51 1 1.8759 -3.5315 9.7952 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066801109.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:19 Heat of formation + Delta-G solvation = -50.331494 kcal Electronic energy + Delta-G solvation = -31942.705648 eV Core-core repulsion = 27739.802207 eV Total energy + Delta-G solvation = -4202.903441 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.99980 -39.94257 -38.07073 -36.99952 -35.01211 -34.64654 -34.14167 -31.45631 -31.12422 -30.24736 -29.94805 -28.45827 -26.16409 -25.42343 -24.26878 -22.87629 -22.45867 -21.37505 -21.04729 -20.40372 -19.16923 -18.00978 -17.58020 -17.28250 -16.97895 -16.44533 -16.14485 -15.39743 -15.31104 -15.19902 -14.64146 -14.51578 -14.46790 -14.26583 -13.97329 -13.80621 -13.70459 -13.59552 -13.30998 -13.04423 -12.81070 -12.59611 -12.53010 -12.16712 -11.99711 -11.81611 -11.76000 -11.34801 -11.27721 -11.19809 -11.11625 -11.07092 -11.04766 -10.64025 -10.55269 -10.29473 -10.12473 -9.96178 -9.84730 -9.48513 -9.15414 -9.00354 -8.94276 -8.55812 -8.03210 -6.60088 -6.27252 -4.36714 1.51488 1.71609 2.31323 2.44530 2.59009 2.63685 3.17127 3.25422 3.27355 3.29879 3.58315 4.08368 4.11088 4.24966 4.34020 4.36479 4.42481 4.61528 4.79403 4.85492 4.97054 5.02505 5.05024 5.08393 5.15140 5.28780 5.30640 5.35282 5.38332 5.49031 5.56281 5.58928 5.64831 5.73183 5.82432 5.84419 5.85367 6.04912 6.22327 6.50017 6.51513 6.57204 6.68920 6.73678 6.75799 6.87367 7.09548 7.24611 7.30534 7.46373 7.54942 7.71915 7.94997 7.96156 8.13343 8.62564 9.27869 10.78640 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.012497 B = 0.002144 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.045543 B =13054.112295 C =14508.771479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.099 3.901 3 H 0.052 0.948 4 C -0.510 4.510 5 H 0.068 0.932 6 C 0.070 3.930 7 N -0.885 5.885 8 Si 0.906 3.094 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 S -0.172 6.172 13 C -0.087 4.087 14 C -0.119 4.119 15 C -0.115 4.115 16 C -0.126 4.126 17 C -0.108 4.108 18 C 0.145 3.855 19 N -0.660 5.660 20 C 0.499 3.501 21 O -0.519 6.519 22 C 0.094 3.906 23 N -0.589 5.589 24 C 0.113 3.887 25 C -0.141 4.141 26 C -0.123 4.123 27 C -0.113 4.113 28 C -0.136 4.136 29 C 0.522 3.478 30 O -0.547 6.547 31 H 0.096 0.904 32 H 0.038 0.962 33 H 0.020 0.980 34 H 0.266 0.734 35 H 0.139 0.861 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.137 0.863 39 H 0.413 0.587 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.075 0.925 49 H 0.066 0.934 50 H 0.097 0.903 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.079 -10.624 21.087 23.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.028 4.028 3 H 0.070 0.930 4 C -0.550 4.550 5 H 0.086 0.914 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.733 3.267 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 S 0.075 5.925 13 C -0.202 4.202 14 C -0.144 4.144 15 C -0.136 4.136 16 C -0.148 4.148 17 C -0.129 4.129 18 C 0.044 3.956 19 N -0.306 5.306 20 C 0.285 3.715 21 O -0.394 6.394 22 C -0.033 4.033 23 N -0.321 5.321 24 C -0.010 4.010 25 C -0.179 4.179 26 C -0.160 4.160 27 C -0.151 4.151 28 C -0.176 4.176 29 C 0.311 3.689 30 O -0.424 6.424 31 H 0.115 0.885 32 H 0.058 0.942 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.157 0.843 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.155 0.845 39 H 0.250 0.750 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.085 0.915 50 H 0.115 0.885 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.432 -11.047 21.447 24.129 hybrid contribution -0.154 0.761 -1.368 1.573 sum 0.277 -10.286 20.078 22.561 Atomic orbital electron populations 1.22136 0.96252 1.00107 1.01825 1.21107 0.95668 0.97397 0.88655 0.92995 1.20673 1.32474 1.13251 0.88565 0.91430 1.24900 0.94656 0.94963 0.98911 1.69859 1.35828 1.22483 1.24100 0.86295 0.78712 0.79632 0.82023 1.19482 1.20713 1.20697 1.84997 1.78149 1.26980 1.02349 1.21827 1.02863 0.99553 0.95954 1.21348 0.99689 0.92697 1.00664 1.21041 1.00604 0.99199 0.92744 1.20935 1.00898 0.96594 0.96365 1.21124 1.00329 0.92303 0.99182 1.17176 1.00458 0.86015 0.91921 1.43432 1.47175 1.20213 1.19730 1.21233 0.80409 0.88410 0.81410 1.90665 1.38275 1.65346 1.45079 1.21333 1.02946 0.93127 0.85909 1.47407 1.22533 1.56157 1.05990 1.21879 0.84651 0.90979 1.03466 1.21833 1.03067 0.96296 0.96748 1.21187 0.98149 1.01000 0.95677 1.21189 0.98848 0.92914 1.02126 1.21941 1.04050 0.97630 0.93966 1.20558 0.83552 0.78045 0.86766 1.90722 1.24652 1.40888 1.86159 0.88519 0.94238 0.96078 0.92416 0.84296 0.86178 0.86260 0.84532 0.74990 0.86522 0.86801 0.89418 0.90129 0.91012 0.90250 0.91660 0.91558 0.90645 0.91510 0.88477 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.64 37.16 0.32 -2.98 16 2 C 0.10 2.36 1.97 -27.88 -0.05 2.30 16 3 H 0.05 1.33 6.88 -51.92 -0.36 0.97 16 4 C -0.51 -13.24 8.58 -34.44 -0.30 -13.54 16 5 H 0.07 1.76 7.71 -52.49 -0.40 1.36 16 6 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 7 N -0.89 -23.59 11.30 55.43 0.63 -22.96 16 8 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 9 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 S -0.17 -3.51 20.06 -107.50 -2.16 -5.67 16 13 C -0.09 -1.65 6.12 -38.90 -0.24 -1.89 16 14 C -0.12 -2.22 8.27 -39.39 -0.33 -2.55 16 15 C -0.12 -1.85 10.04 -39.58 -0.40 -2.25 16 16 C -0.13 -1.95 10.04 -39.56 -0.40 -2.34 16 17 C -0.11 -1.83 8.71 -39.42 -0.34 -2.17 16 18 C 0.14 2.54 6.34 -83.43 -0.53 2.01 16 19 N -0.66 -9.86 5.04 -9.70 -0.05 -9.91 16 20 C 0.50 7.12 7.75 -10.98 -0.09 7.04 16 21 O -0.52 -8.85 13.78 5.54 0.08 -8.77 16 22 C 0.09 0.98 5.80 -5.20 -0.03 0.95 16 23 N -0.59 -5.96 1.94 -174.61 -0.34 -6.30 16 24 C 0.11 0.81 5.88 -3.67 -0.02 0.79 16 25 C -0.14 -0.73 5.73 -27.36 -0.16 -0.89 16 26 C -0.12 -0.57 5.28 -27.96 -0.15 -0.72 16 27 C -0.11 -0.66 5.64 -27.44 -0.15 -0.81 16 28 C -0.14 -1.08 5.56 -27.62 -0.15 -1.23 16 29 C 0.52 6.15 6.78 -11.26 -0.08 6.08 16 30 O -0.55 -8.71 16.60 5.56 0.09 -8.62 16 31 H 0.10 2.42 5.97 -51.93 -0.31 2.11 16 32 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.02 0.43 6.05 -51.93 -0.31 0.12 16 34 H 0.27 6.72 8.31 -40.82 -0.34 6.39 16 35 H 0.14 2.75 4.64 -52.48 -0.24 2.51 16 36 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 37 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 38 H 0.14 2.37 6.10 -52.48 -0.32 2.05 16 39 H 0.41 5.52 7.93 -40.82 -0.32 5.20 16 40 H 0.12 1.21 7.38 -51.93 -0.38 0.83 16 41 H 0.11 0.86 8.03 -51.93 -0.42 0.44 16 42 H 0.09 0.61 7.92 -51.93 -0.41 0.20 16 43 H 0.08 0.56 6.71 -51.93 -0.35 0.21 16 44 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16 45 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.06 0.27 7.89 -51.93 -0.41 -0.14 16 47 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.07 0.46 7.86 -51.93 -0.41 0.05 16 50 H 0.10 0.77 8.13 -51.93 -0.42 0.35 16 51 H 0.09 0.62 6.79 -51.93 -0.35 0.27 16 LS Contribution 413.05 15.07 6.22 6.22 Total: -1.00 -32.00 413.05 -11.24 -43.24 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.52 Total: 8.09 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -3.18 Total: -10.49 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.24 Total: -39.18 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: 0.17 Total: -17.39 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.16 Total: -5.67 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.00 -11.24 -43.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066801109.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.091 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds