Wall clock time and date at job start Tue Mar 31 2020 06:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46575 * 2 1 4 4 C 1.50699 * 109.47397 * 240.00359 * 2 1 3 5 5 H 1.07998 * 119.99949 * 240.00288 * 4 2 1 6 6 C 1.37882 * 119.99770 * 59.99265 * 4 2 1 7 7 N 1.31507 * 120.00056 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99533 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47323 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47191 * 120.00477 * 8 6 4 11 11 H 1.48512 * 109.46959 * 240.00200 * 8 6 4 12 12 S 1.81396 * 109.47315 * 119.99821 * 2 1 3 13 13 C 1.76199 * 103.00216 * 286.11319 * 12 2 1 14 14 C 1.38785 * 120.10552 * 0.16138 * 13 12 2 15 15 C 1.38197 * 119.98834 * 180.27713 * 14 13 12 16 16 C 1.38292 * 120.20022 * 359.71000 * 15 14 13 17 17 C 1.38249 * 120.21333 * 359.97438 * 16 15 14 18 18 C 1.38654 * 120.00724 * 0.02562 * 17 16 15 19 19 N 1.40137 * 120.10489 * 180.02562 * 18 17 16 20 20 C 1.34784 * 119.99637 * 33.75833 * 19 18 17 21 21 O 1.21295 * 120.00006 * 354.74748 * 20 19 18 22 22 C 1.50698 * 120.00099 * 174.75103 * 20 19 18 23 23 N 1.46493 * 109.47101 * 179.97438 * 22 20 19 24 24 C 1.47202 * 119.78517 * 89.99878 * 23 22 20 25 25 C 1.52986 * 108.66201 * 108.04129 * 24 23 22 26 26 C 1.51780 * 110.88246 * 86.46807 * 25 24 23 27 27 C 1.51790 * 113.70384 * 293.06241 * 26 25 24 28 28 C 1.52818 * 110.87515 * 66.88722 * 27 26 25 29 29 C 1.33371 * 119.79153 * 269.97593 * 23 22 20 30 30 O 1.21278 * 119.88775 * 0.28779 * 29 23 22 31 31 H 1.08997 * 109.47403 * 64.13657 * 1 2 3 32 32 H 1.08997 * 109.46900 * 184.13463 * 1 2 3 33 33 H 1.08996 * 109.46993 * 304.12917 * 1 2 3 34 34 H 0.96999 * 119.99765 * 179.97438 * 7 6 4 35 35 H 1.08003 * 120.00833 * 359.96125 * 14 13 12 36 36 H 1.08000 * 119.89865 * 179.73937 * 15 14 13 37 37 H 1.08006 * 119.89750 * 180.02562 * 16 15 14 38 38 H 1.08003 * 120.00381 * 179.97438 * 17 16 15 39 39 H 0.96996 * 120.00478 * 213.75956 * 19 18 17 40 40 H 1.09006 * 109.47104 * 59.99735 * 22 20 19 41 41 H 1.08999 * 109.46933 * 299.99828 * 22 20 19 42 42 H 1.08998 * 109.60430 * 348.29384 * 24 23 22 43 43 H 1.08996 * 109.60769 * 227.79109 * 24 23 22 44 44 H 1.09002 * 109.19683 * 326.11080 * 25 24 23 45 45 H 1.08997 * 109.19747 * 206.83325 * 25 24 23 46 46 H 1.08998 * 108.61334 * 54.11774 * 26 25 24 47 47 H 1.09005 * 108.61711 * 172.01796 * 26 25 24 48 48 H 1.09003 * 109.22456 * 187.06191 * 27 26 25 49 49 H 1.08999 * 109.22515 * 306.41224 * 27 26 25 50 50 H 1.09005 * 109.69067 * 155.29654 * 28 27 26 51 51 H 1.09000 * 109.83036 * 34.74366 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9434 0.8302 -2.6033 8 14 2.3214 -1.1202 -4.0079 9 1 3.1456 -2.2874 -3.6038 10 1 1.1662 -1.5865 -4.8161 11 1 3.1466 -0.1870 -4.8165 12 16 2.1347 -0.8551 1.4811 13 6 1.8177 0.3071 2.7670 14 6 1.2287 1.5286 2.4717 15 6 0.9863 2.4406 3.4813 16 6 1.3235 2.1379 4.7879 17 6 1.9046 0.9210 5.0923 18 6 2.1517 -0.0005 4.0862 19 7 2.7402 -1.2349 4.3926 20 6 2.4714 -1.8362 5.5686 21 8 1.7973 -1.2667 6.4008 22 6 3.0084 -3.2159 5.8495 23 7 2.5806 -3.6441 7.1835 24 6 1.3111 -4.3713 7.3460 25 6 1.6226 -5.8333 7.6715 26 6 1.8190 -6.0253 9.1642 27 6 3.0557 -5.3355 9.7108 28 6 2.9143 -3.8163 9.6256 29 6 3.3441 -3.3730 8.2430 30 8 4.3859 -2.7691 8.0985 31 1 -0.3634 0.4483 -0.9247 32 1 -0.3633 -1.0250 0.0741 33 1 -0.3633 0.5766 0.8506 34 1 0.7093 1.1618 -3.4843 35 1 0.9644 1.7684 1.4524 36 1 0.5317 3.3924 3.2493 37 1 1.1315 2.8542 5.5732 38 1 2.1670 0.6883 6.1138 39 1 3.3410 -1.6565 3.7585 40 1 4.0974 -3.1978 5.8058 41 1 2.6264 -3.9132 5.1038 42 1 0.7374 -4.3168 6.4209 43 1 0.7382 -3.9293 8.1611 44 1 2.5320 -6.1309 7.1493 45 1 0.7961 -6.4593 7.3352 46 1 0.9441 -5.6340 9.6834 47 1 1.8963 -7.0929 9.3706 48 1 3.1951 -5.6216 10.7533 49 1 3.9258 -5.6488 9.1340 50 1 3.5502 -3.3456 10.3753 51 1 1.8759 -3.5315 9.7952 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066801109.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:17 Heat of formation + Delta-G solvation = -66.894268 kcal Electronic energy + Delta-G solvation = -31943.423864 eV Core-core repulsion = 27739.802207 eV Total energy + Delta-G solvation = -4203.621657 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.97293 -41.02762 -39.34419 -37.74064 -36.30649 -35.80385 -35.59041 -32.82509 -32.06170 -31.61349 -31.30880 -29.41574 -27.39549 -26.88259 -24.93780 -24.17725 -23.82808 -23.09259 -21.78818 -21.35694 -20.05384 -19.34436 -18.47747 -18.31806 -18.24572 -17.85284 -17.49026 -16.95805 -16.49198 -16.27044 -16.00630 -15.59036 -15.27830 -15.19081 -15.10268 -15.06165 -14.73970 -14.43544 -14.39931 -14.37065 -14.15467 -13.74233 -13.62443 -13.27204 -13.22737 -13.01106 -12.91251 -12.89109 -12.74168 -12.45816 -12.39879 -12.25535 -11.85956 -11.75775 -11.62406 -11.48959 -11.47472 -11.36292 -11.10449 -10.83826 -10.83050 -10.60475 -10.47155 -9.83092 -9.37416 -8.24197 -8.16417 -6.40834 0.18477 0.32790 0.82211 1.40847 1.42544 1.43867 1.47456 1.55062 1.78684 1.85132 2.23470 2.38309 2.74786 3.05573 3.45942 3.55737 3.85016 3.88781 3.90191 3.95596 4.10235 4.13577 4.23581 4.34027 4.35660 4.43892 4.46859 4.50744 4.52401 4.59324 4.59986 4.81233 4.82167 4.86182 4.88478 4.89054 5.02084 5.12226 5.16883 5.25005 5.26368 5.29393 5.32118 5.37301 5.44156 5.47030 5.53294 5.58014 5.75574 5.98234 6.02434 6.27552 6.31466 6.62156 6.95181 7.09727 7.26885 8.81251 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.012497 B = 0.002144 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.045543 B =13054.112295 C =14508.771479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.095 3.905 3 H 0.026 0.974 4 C -0.529 4.529 5 H 0.061 0.939 6 C 0.026 3.974 7 N -0.909 5.909 8 Si 0.967 3.033 9 H -0.267 1.267 10 H -0.276 1.276 11 H -0.278 1.278 12 S -0.159 6.159 13 C -0.109 4.109 14 C -0.134 4.134 15 C -0.114 4.114 16 C -0.112 4.112 17 C -0.118 4.118 18 C 0.143 3.857 19 N -0.659 5.659 20 C 0.498 3.502 21 O -0.547 6.547 22 C 0.096 3.904 23 N -0.587 5.587 24 C 0.107 3.893 25 C -0.134 4.134 26 C -0.122 4.122 27 C -0.108 4.108 28 C -0.131 4.131 29 C 0.512 3.488 30 O -0.599 6.599 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.034 0.966 34 H 0.268 0.732 35 H 0.121 0.879 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.133 0.867 39 H 0.419 0.581 40 H 0.117 0.883 41 H 0.148 0.852 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.097 0.903 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.093 0.907 49 H 0.053 0.947 50 H 0.093 0.907 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.768 -11.960 22.452 25.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.033 4.033 3 H 0.044 0.956 4 C -0.568 4.568 5 H 0.080 0.920 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.792 3.208 9 H -0.191 1.191 10 H -0.201 1.201 11 H -0.204 1.204 12 S 0.088 5.912 13 C -0.224 4.224 14 C -0.158 4.158 15 C -0.134 4.134 16 C -0.133 4.133 17 C -0.140 4.140 18 C 0.042 3.958 19 N -0.305 5.305 20 C 0.286 3.714 21 O -0.424 6.424 22 C -0.031 4.031 23 N -0.317 5.317 24 C -0.015 4.015 25 C -0.173 4.173 26 C -0.159 4.159 27 C -0.146 4.146 28 C -0.171 4.171 29 C 0.302 3.698 30 O -0.480 6.480 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.139 0.861 36 H 0.167 0.833 37 H 0.172 0.828 38 H 0.151 0.849 39 H 0.257 0.743 40 H 0.135 0.865 41 H 0.165 0.835 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.116 0.884 46 H 0.095 0.905 47 H 0.098 0.902 48 H 0.111 0.889 49 H 0.072 0.928 50 H 0.111 0.889 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.282 -12.412 22.824 25.982 hybrid contribution 0.043 1.253 -1.663 2.083 sum -0.239 -11.159 21.161 23.924 Atomic orbital electron populations 1.21946 0.95864 0.99812 1.01218 1.20868 0.95991 0.96256 0.90224 0.95598 1.20924 1.32710 1.13323 0.89866 0.92035 1.25675 0.94744 0.95591 1.01590 1.69966 1.36489 1.23469 1.24780 0.85356 0.78272 0.78605 0.78571 1.19100 1.20136 1.20369 1.84665 1.78625 1.26818 1.01129 1.21819 1.04871 0.99789 0.95933 1.21354 1.00440 0.93414 1.00618 1.21322 1.00046 0.99715 0.92288 1.21323 0.98666 0.96363 0.96956 1.21258 1.00927 0.92975 0.98809 1.17317 1.00012 0.87032 0.91399 1.43511 1.47101 1.19617 1.20284 1.21925 0.79596 0.89372 0.80481 1.90640 1.39681 1.66313 1.45806 1.21442 1.02960 0.91512 0.87208 1.47603 1.23179 1.55469 1.05468 1.22133 0.83364 0.92012 1.03956 1.21788 1.03402 0.94822 0.97247 1.21195 0.97806 1.01696 0.95192 1.21189 0.99046 0.91169 1.03150 1.21986 1.04554 0.99199 0.91381 1.21301 0.82960 0.77182 0.88349 1.90689 1.26920 1.43381 1.87047 0.90737 0.94459 0.94729 0.92243 0.86083 0.83339 0.82844 0.84884 0.74275 0.86526 0.83480 0.89038 0.89691 0.91719 0.88441 0.90544 0.90238 0.88885 0.92838 0.88860 0.87633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.06 8.64 71.98 0.62 -5.43 16 2 C 0.09 4.62 1.97 29.85 0.06 4.68 16 3 H 0.03 1.39 6.88 -2.39 -0.02 1.37 16 4 C -0.53 -27.97 8.58 25.60 0.22 -27.75 16 5 H 0.06 3.25 7.71 -2.91 -0.02 3.23 16 6 C 0.03 1.35 5.29 84.66 0.45 1.80 16 7 N -0.91 -49.31 11.30 21.45 0.24 -49.07 16 8 Si 0.97 41.52 29.54 68.60 2.03 43.54 16 9 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 10 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 12 S -0.16 -6.56 20.06 -56.49 -1.13 -7.70 16 13 C -0.11 -4.16 6.12 22.71 0.14 -4.02 16 14 C -0.13 -4.98 8.27 22.39 0.19 -4.80 16 15 C -0.11 -3.46 10.04 22.27 0.22 -3.23 16 16 C -0.11 -3.21 10.04 22.29 0.22 -2.99 16 17 C -0.12 -3.89 8.71 22.37 0.19 -3.69 16 18 C 0.14 4.97 6.34 38.22 0.24 5.22 16 19 N -0.66 -19.53 5.04 -302.99 -1.53 -21.06 16 20 C 0.50 14.00 7.75 87.66 0.68 14.68 16 21 O -0.55 -18.49 13.78 -3.08 -0.04 -18.54 16 22 C 0.10 1.92 5.80 85.63 0.50 2.42 16 23 N -0.59 -11.33 1.94 -825.51 -1.60 -12.93 16 24 C 0.11 1.33 5.88 86.24 0.51 1.84 16 25 C -0.13 -1.06 5.73 30.19 0.17 -0.88 16 26 C -0.12 -0.78 5.28 29.80 0.16 -0.63 16 27 C -0.11 -1.05 5.64 30.14 0.17 -0.88 16 28 C -0.13 -1.95 5.56 30.02 0.17 -1.78 16 29 C 0.51 11.94 6.78 88.10 0.60 12.54 16 30 O -0.60 -19.58 16.60 -3.02 -0.05 -19.63 16 31 H 0.07 3.83 5.97 -2.39 -0.01 3.82 16 32 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.03 1.48 6.05 -2.39 -0.01 1.46 16 34 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 35 H 0.12 4.93 4.64 -2.91 -0.01 4.92 16 36 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 37 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 38 H 0.13 4.53 6.10 -2.91 -0.02 4.51 16 39 H 0.42 11.14 7.93 -92.71 -0.74 10.41 16 40 H 0.12 2.41 7.38 -2.38 -0.02 2.39 16 41 H 0.15 1.94 8.03 -2.39 -0.02 1.92 16 42 H 0.09 1.08 7.92 -2.39 -0.02 1.07 16 43 H 0.08 1.00 6.71 -2.39 -0.02 0.99 16 44 H 0.06 0.63 8.05 -2.39 -0.02 0.61 16 45 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.08 0.36 7.89 -2.39 -0.02 0.34 16 47 H 0.08 0.36 8.14 -2.38 -0.02 0.34 16 48 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.05 0.68 7.86 -2.39 -0.02 0.66 16 50 H 0.09 1.44 8.13 -2.38 -0.02 1.42 16 51 H 0.11 1.25 6.79 -2.39 -0.02 1.23 16 Total: -1.00 -70.98 413.05 3.64 -67.34 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.23 Total: 30.96 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 5.51 Total: -12.91 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -2.89 Total: -83.06 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -0.09 Total: -38.17 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Atomic # 16 Polarization: -6.56 SS G_CDS: -1.13 Total: -7.70 kcal Total: -70.98 3.64 -67.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066801109.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.441 kcal (2) G-P(sol) polarization free energy of solvation -70.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds