Wall clock time and date at job start Tue Mar 31 2020 06:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47130 * 172.14705 * 3 2 1 5 5 C 1.37104 * 119.99663 * 264.20748 * 4 3 2 6 6 H 1.08005 * 119.99480 * 198.11351 * 5 4 3 7 7 C 1.38940 * 120.00102 * 18.11495 * 5 4 3 8 8 N 1.31411 * 120.00237 * 18.72723 * 7 5 4 9 9 Si 1.86801 * 120.00074 * 198.73028 * 7 5 4 10 10 H 1.48498 * 109.47521 * 85.58339 * 9 7 5 11 11 H 1.48505 * 109.47272 * 205.59025 * 9 7 5 12 12 H 1.48503 * 109.46963 * 325.58698 * 9 7 5 13 13 C 1.34774 * 119.99876 * 84.20702 * 4 3 2 14 14 O 1.21298 * 119.99548 * 180.02562 * 13 4 3 15 15 C 1.50695 * 120.00179 * 359.97438 * 13 4 3 16 16 C 1.53003 * 109.47167 * 180.02562 * 15 13 4 17 17 N 1.46902 * 109.47178 * 180.02562 * 16 15 13 18 18 C 1.48061 * 111.00183 * 293.95905 * 17 16 15 19 19 C 1.53699 * 112.46834 * 192.19248 * 18 17 16 20 20 C 1.50799 * 112.09505 * 318.55753 * 19 18 17 21 21 N 1.47902 * 108.49643 * 92.55732 * 20 19 18 22 22 C 1.46896 * 111.00270 * 153.75876 * 21 20 19 23 23 C 1.50707 * 109.46965 * 317.98126 * 22 21 20 24 24 C 1.33392 * 125.20502 * 90.00083 * 23 22 21 25 25 C 1.38423 * 114.91953 * 179.97438 * 24 23 22 26 26 C 1.33390 * 114.92160 * 359.97438 * 25 24 23 27 27 S 1.75880 * 125.20062 * 269.68762 * 23 22 21 28 28 C 1.40007 * 114.07327 * 280.05431 * 21 20 19 29 29 C 1.44570 * 110.99804 * 166.25606 * 17 16 15 30 30 H 1.08999 * 109.47558 * 52.14673 * 3 2 1 31 31 H 1.08999 * 109.47483 * 292.14840 * 3 2 1 32 32 H 0.97009 * 119.99963 * 180.02562 * 8 7 5 33 33 H 1.09007 * 109.46772 * 60.00256 * 15 13 4 34 34 H 1.08995 * 109.47382 * 300.00718 * 15 13 4 35 35 H 1.08995 * 109.46674 * 60.00495 * 16 15 13 36 36 H 1.09001 * 109.47287 * 300.00223 * 16 15 13 37 37 H 1.08999 * 108.88915 * 71.41916 * 18 17 16 38 38 H 1.09007 * 108.88554 * 312.96101 * 18 17 16 39 39 H 1.08992 * 108.95532 * 197.87945 * 19 18 17 40 40 H 1.09003 * 108.95478 * 79.22774 * 19 18 17 41 41 H 1.08994 * 109.63249 * 332.85093 * 20 19 18 42 42 H 1.09003 * 109.62912 * 212.25584 * 20 19 18 43 43 H 1.09005 * 109.47121 * 77.97739 * 22 21 20 44 44 H 1.08994 * 109.47447 * 197.97802 * 22 21 20 45 45 H 1.07999 * 122.53551 * 359.95177 * 24 23 22 46 46 H 1.07994 * 122.53558 * 180.02562 * 25 24 23 47 47 H 1.08001 * 125.20236 * 179.97438 * 26 25 24 48 48 H 1.08999 * 108.96566 * 182.47218 * 28 21 20 49 49 H 1.08998 * 108.96656 * 301.13563 * 28 21 20 50 50 H 1.09006 * 109.56921 * 100.54042 * 29 17 16 51 51 H 1.08998 * 109.57591 * 340.16715 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0957 1.3692 -0.1887 5 6 3.4370 1.8086 -1.4418 6 1 4.0582 2.6846 -1.5562 7 6 2.9836 1.1268 -2.5644 8 7 1.9580 0.3110 -2.4681 9 14 3.8322 1.3700 -4.2107 10 1 4.9924 0.4486 -4.3106 11 1 2.8747 1.0812 -5.3086 12 1 4.3039 2.7737 -4.3219 13 6 3.2089 2.1962 0.8695 14 8 3.6122 3.3293 0.7131 15 6 2.8332 1.7134 2.2466 16 6 3.0529 2.8391 3.2593 17 7 2.6873 2.3682 4.6019 18 6 1.2352 2.0931 4.6906 19 6 0.7633 1.8896 6.1391 20 6 1.7351 1.0612 6.9412 21 7 2.6768 1.9738 7.6250 22 6 3.2136 1.3583 8.8460 23 6 2.1054 0.6472 9.5791 24 6 1.7576 -0.6277 9.3977 25 6 0.7070 -1.0636 10.1866 26 6 0.2020 -0.1428 11.0091 27 16 1.0779 1.3694 10.8104 28 6 3.7091 2.4476 6.8064 29 6 3.1743 3.2732 5.6187 30 1 2.9716 -0.6298 -0.8114 31 1 2.9715 -0.3866 0.9518 32 1 1.6417 -0.1652 -3.2518 33 1 3.4537 0.8578 2.5135 34 1 1.7841 1.4177 2.2544 35 1 2.4321 3.6942 2.9922 36 1 4.1020 3.1350 3.2516 37 1 1.0107 1.1939 4.1168 38 1 0.6901 2.9314 4.2565 39 1 -0.2048 1.3889 6.1290 40 1 0.6513 2.8638 6.6152 41 1 2.2866 0.3972 6.2757 42 1 1.1916 0.4738 7.6814 43 1 3.9913 0.6422 8.5802 44 1 3.6358 2.1317 9.4875 45 1 2.2575 -1.2709 8.6887 46 1 0.3257 -2.0729 10.1403 47 1 -0.6173 -0.3024 11.6945 48 1 4.3744 3.0731 7.4014 49 1 4.2740 1.5985 6.4215 50 1 2.3603 3.9145 5.9570 51 1 3.9775 3.8853 5.2085 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069350266.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:05 Heat of formation + Delta-G solvation = 65.860711 kcal Electronic energy + Delta-G solvation = -32076.959061 eV Core-core repulsion = 27911.386844 eV Total energy + Delta-G solvation = -4165.572218 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.167 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -39.96471 -38.92782 -38.06227 -36.34987 -35.70739 -34.33399 -32.75084 -32.07200 -31.65792 -30.16405 -27.67920 -27.35131 -26.37813 -25.22706 -24.69981 -22.98317 -22.44921 -20.76735 -19.89162 -19.51943 -18.86705 -17.88888 -17.36932 -16.84431 -16.43227 -16.11279 -16.04561 -15.74748 -15.19513 -14.96557 -14.67972 -14.33136 -14.18767 -14.06647 -13.77180 -13.43280 -13.09205 -12.99384 -12.97143 -12.79791 -12.65231 -12.51121 -12.33137 -12.11286 -11.84805 -11.72490 -11.59999 -11.31175 -11.30224 -11.22543 -11.16606 -11.07837 -11.03976 -10.91795 -10.59366 -10.56275 -10.41152 -10.35732 -10.25740 -9.26506 -8.96722 -8.72758 -8.58919 -8.32320 -8.08205 -8.04345 -6.49343 -4.00875 0.67394 1.35317 1.74048 2.41676 3.10565 3.21692 3.25343 3.56145 3.77701 3.83972 3.95396 3.99798 4.14431 4.39711 4.77122 4.80589 4.84723 4.86971 4.92357 5.07239 5.09057 5.13997 5.20021 5.24025 5.28990 5.34680 5.39341 5.43898 5.54818 5.55368 5.66258 5.70176 5.70705 5.80249 5.85965 5.95054 5.97113 5.97763 6.02632 6.10930 6.16416 6.17007 6.23340 6.37365 6.38434 6.55535 6.91297 7.15447 7.30611 7.37475 7.46801 7.91041 8.28589 8.75033 9.00687 9.20287 9.74560 10.56490 Molecular weight = 376.17amu Principal moments of inertia in cm(-1) A = 0.019051 B = 0.001785 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.373039 B =15680.048554 C =16524.290969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.248 3.752 3 C 0.222 3.778 4 N -0.445 5.445 5 C -0.311 4.311 6 H 0.108 0.892 7 C 0.030 3.970 8 N -0.882 5.882 9 Si 0.929 3.071 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.458 3.542 14 O -0.577 6.577 15 C -0.130 4.130 16 C 0.083 3.917 17 N -0.555 5.555 18 C 0.059 3.941 19 C -0.117 4.117 20 C 0.057 3.943 21 N -0.546 5.546 22 C 0.128 3.872 23 C -0.167 4.167 24 C -0.138 4.138 25 C -0.134 4.134 26 C -0.220 4.220 27 S 0.117 5.883 28 C 0.077 3.923 29 C 0.066 3.934 30 H 0.129 0.871 31 H 0.083 0.917 32 H 0.273 0.727 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.083 0.917 43 H 0.054 0.946 44 H 0.082 0.918 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.162 0.838 48 H 0.068 0.932 49 H 0.034 0.966 50 H 0.050 0.950 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.598 -3.496 25.831 26.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.070 4.070 3 C 0.094 3.906 4 N -0.165 5.165 5 C -0.438 4.438 6 H 0.125 0.875 7 C -0.173 4.173 8 N -0.521 5.521 9 Si 0.756 3.244 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.195 1.195 13 C 0.246 3.754 14 O -0.460 6.460 15 C -0.171 4.171 16 C -0.044 4.044 17 N -0.280 5.280 18 C -0.068 4.068 19 C -0.155 4.155 20 C -0.070 4.070 21 N -0.271 5.271 22 C 0.000 4.000 23 C -0.285 4.285 24 C -0.170 4.170 25 C -0.164 4.164 26 C -0.356 4.356 27 S 0.381 5.619 28 C -0.053 4.053 29 C -0.063 4.063 30 H 0.146 0.854 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.052 0.948 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.101 0.899 45 H 0.156 0.844 46 H 0.156 0.844 47 H 0.179 0.821 48 H 0.086 0.914 49 H 0.052 0.948 50 H 0.068 0.932 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.102 -1.622 26.458 26.507 hybrid contribution 0.587 -1.451 -2.119 2.634 sum 0.485 -3.074 24.339 24.537 Atomic orbital electron populations 1.80890 1.13634 1.08468 1.12610 1.29330 0.95388 0.92494 0.89801 1.18753 0.81560 0.87654 1.02618 1.43643 1.56713 1.08899 1.07295 1.19727 1.29542 1.14042 0.80462 0.87467 1.25286 0.95069 0.97076 0.99912 1.69825 1.21342 1.29383 1.31563 0.85879 0.78805 0.79093 0.80616 1.20104 1.21129 1.19451 1.20157 0.83554 0.85667 0.86022 1.90539 1.50442 1.19133 1.85895 1.21562 1.02485 0.99809 0.93266 1.21810 1.01418 0.95468 0.85747 1.60694 1.14981 1.48559 1.03740 1.22448 0.86943 1.00843 0.96588 1.21411 0.98297 1.01338 0.94446 1.22048 0.94243 0.93933 0.96751 1.59386 1.20331 1.40077 1.07304 1.20542 0.91929 0.96688 0.90835 1.24376 1.03609 0.97534 1.02951 1.20170 0.99392 0.95241 1.02173 1.20152 0.97848 1.00856 0.97571 1.25670 1.06413 0.96794 1.06740 1.84343 1.28231 1.13498 1.35853 1.20979 0.92227 0.98589 0.93545 1.21861 0.99619 0.93303 0.91528 0.85362 0.89909 0.91641 0.89399 0.90560 0.94240 0.90111 0.90912 0.94824 0.91388 0.91163 0.93024 0.89932 0.92831 0.89938 0.84376 0.84372 0.82060 0.91361 0.94815 0.93170 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.25 18.54 42.15 0.78 -10.47 16 2 C 0.25 5.45 12.95 -20.76 -0.27 5.18 16 3 C 0.22 4.36 4.91 -6.83 -0.03 4.33 16 4 N -0.45 -10.29 2.60 -117.93 -0.31 -10.60 16 5 C -0.31 -7.96 9.33 -14.93 -0.14 -8.10 16 6 H 0.11 2.91 7.38 -52.48 -0.39 2.52 16 7 C 0.03 0.73 4.94 -17.47 -0.09 0.64 16 8 N -0.88 -22.18 9.33 55.49 0.52 -21.66 16 9 Si 0.93 19.69 29.59 -169.99 -5.03 14.66 16 10 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 11 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 13 C 0.46 10.18 7.56 -10.99 -0.08 10.10 16 14 O -0.58 -14.82 15.64 5.54 0.09 -14.74 16 15 C -0.13 -2.21 4.23 -27.88 -0.12 -2.33 16 16 C 0.08 1.30 4.15 -3.82 -0.02 1.28 16 17 N -0.55 -7.21 3.94 -234.30 -0.92 -8.13 16 18 C 0.06 0.75 4.92 -2.82 -0.01 0.74 16 19 C -0.12 -1.27 5.36 -27.47 -0.15 -1.42 16 20 C 0.06 0.58 4.98 -4.38 -0.02 0.56 16 21 N -0.55 -5.28 4.23 -241.21 -1.02 -6.30 16 22 C 0.13 1.06 5.72 -4.97 -0.03 1.03 16 23 C -0.17 -1.39 4.70 -36.00 -0.17 -1.56 16 24 C -0.14 -1.10 7.99 -41.21 -0.33 -1.43 16 25 C -0.13 -0.99 10.18 -41.21 -0.42 -1.41 16 26 C -0.22 -1.59 11.23 29.04 0.33 -1.26 16 27 S 0.12 0.93 23.33 -107.50 -2.51 -1.58 16 28 C 0.08 0.76 4.99 -6.75 -0.03 0.72 16 29 C 0.07 0.75 5.45 -4.44 -0.02 0.73 16 30 H 0.13 2.60 6.40 -51.93 -0.33 2.27 16 31 H 0.08 1.25 6.68 -51.93 -0.35 0.91 16 32 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.09 1.31 7.41 -51.93 -0.39 0.92 16 34 H 0.08 1.31 6.18 -51.93 -0.32 0.99 16 35 H 0.04 0.69 7.94 -51.93 -0.41 0.28 16 36 H 0.08 1.29 7.62 -51.93 -0.40 0.89 16 37 H 0.07 0.97 7.04 -51.93 -0.37 0.60 16 38 H 0.03 0.46 7.92 -51.93 -0.41 0.05 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.81 7.23 -51.93 -0.38 0.43 16 41 H 0.05 0.59 7.57 -51.93 -0.39 0.20 16 42 H 0.08 0.82 4.38 -51.93 -0.23 0.59 16 43 H 0.05 0.42 8.06 -51.93 -0.42 0.01 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 46 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 48 H 0.07 0.58 8.02 -51.93 -0.42 0.17 16 49 H 0.03 0.37 8.07 -51.93 -0.42 -0.05 16 50 H 0.05 0.60 6.93 -51.93 -0.36 0.24 16 51 H 0.07 0.83 7.34 -51.93 -0.38 0.45 16 LS Contribution 413.04 15.07 6.22 6.22 Total: -1.00 -30.16 413.04 -11.38 -41.54 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.60 Total: 3.25 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -1.61 Total: 7.79 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.95 Total: -57.15 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.09 Total: -14.74 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.51 Total: -1.58 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -30.16 -11.38 -41.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069350266.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.399 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds