Wall clock time and date at job start Tue Mar 31 2020 06:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45195 * 109.47318 * 2 1 4 4 C 1.34630 * 117.00371 * 180.02562 * 3 2 1 5 5 O 1.21515 * 120.00124 * 359.97438 * 4 3 2 6 6 N 1.34782 * 120.00289 * 179.97438 * 4 3 2 7 7 C 1.46965 * 120.59357 * 180.02562 * 6 4 3 8 8 C 1.53368 * 108.77360 * 235.16089 * 7 6 4 9 9 N 1.47050 * 108.59570 * 310.83097 * 8 7 6 10 10 S 1.65594 * 120.45153 * 235.05439 * 9 8 7 11 11 O 1.42098 * 106.40618 * 23.43933 * 10 9 8 12 12 O 1.42103 * 106.40271 * 156.35877 * 10 9 8 13 13 N 1.65602 * 107.21571 * 269.89544 * 10 9 8 14 14 C 1.46966 * 120.59607 * 269.72152 * 13 10 9 15 15 C 1.53806 * 108.39719 * 124.75922 * 14 13 10 16 16 N 1.46966 * 108.57826 * 49.63746 * 15 14 13 17 17 C 1.36941 * 120.59386 * 124.62481 * 16 15 14 18 18 H 1.07996 * 120.00486 * 207.38649 * 17 16 15 19 19 C 1.38817 * 119.99685 * 27.38264 * 17 16 15 20 20 N 1.31615 * 120.00156 * 215.23640 * 19 17 16 21 21 Si 1.86800 * 119.99933 * 35.24360 * 19 17 16 22 22 H 1.48500 * 109.47121 * 95.37022 * 21 19 17 23 23 H 1.48506 * 109.47038 * 215.36814 * 21 19 17 24 24 H 1.48501 * 109.47281 * 335.36618 * 21 19 17 25 25 C 1.46963 * 118.81364 * 304.64202 * 16 15 14 26 26 C 1.46966 * 120.59059 * 90.00379 * 13 10 9 27 27 C 1.46966 * 118.94935 * 54.95208 * 9 8 7 28 28 C 1.46962 * 120.59407 * 0.02562 * 6 4 3 29 29 H 1.09001 * 109.47315 * 300.00255 * 1 2 3 30 30 H 1.08998 * 109.47136 * 60.00317 * 1 2 3 31 31 H 1.09001 * 109.46700 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47174 * 239.99251 * 2 1 3 33 33 H 1.09005 * 109.46791 * 119.99801 * 2 1 3 34 34 H 1.08996 * 109.61193 * 354.98657 * 7 6 4 35 35 H 1.09000 * 109.61127 * 115.32621 * 7 6 4 36 36 H 1.08999 * 109.61428 * 70.40349 * 8 7 6 37 37 H 1.09001 * 109.60839 * 190.91575 * 8 7 6 38 38 H 1.09001 * 109.60516 * 244.54349 * 14 13 10 39 39 H 1.08997 * 109.60857 * 5.05451 * 14 13 10 40 40 H 1.09003 * 109.74574 * 289.85110 * 15 14 13 41 41 H 1.09000 * 109.67423 * 169.38838 * 15 14 13 42 42 H 0.96998 * 120.00429 * 180.02562 * 20 19 17 43 43 H 1.08993 * 109.61327 * 295.48422 * 25 16 15 44 44 H 1.08998 * 109.74871 * 175.05033 * 25 16 15 45 45 H 1.08996 * 109.61066 * 354.95136 * 26 13 10 46 46 H 1.09003 * 109.60632 * 115.45578 * 26 13 10 47 47 H 1.08996 * 109.60825 * 185.13268 * 27 9 8 48 48 H 1.09000 * 109.60952 * 64.62618 * 27 9 8 49 49 H 1.09003 * 109.61084 * 244.50240 * 28 6 4 50 50 H 1.09005 * 109.60536 * 4.83802 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3488 1.5453 -0.0005 5 8 4.0890 0.5817 -0.0005 6 7 3.8639 2.7908 -0.0011 7 6 5.3189 2.9984 -0.0022 8 6 5.6912 3.8895 1.1892 9 7 4.8047 5.0627 1.1924 10 16 5.4377 6.5929 1.1922 11 8 6.7455 6.4862 0.6467 12 8 4.4359 7.4416 0.6487 13 7 5.6263 7.0455 2.7740 14 6 4.5447 7.7390 3.4876 15 6 4.2167 6.9439 4.7627 16 7 5.4709 6.6648 5.4761 17 6 5.6273 7.0398 6.7838 18 1 6.6132 7.2497 7.1713 19 6 4.5183 7.1504 7.6114 20 7 4.4784 8.0854 8.5369 21 14 3.0827 5.9720 7.4118 22 1 3.2311 4.8447 8.3669 23 1 1.8116 6.6893 7.6864 24 1 3.0638 5.4455 6.0234 25 6 6.5545 5.9763 4.7608 26 6 6.8805 6.7664 3.4874 27 6 3.3498 4.8550 1.1934 28 6 2.9809 3.9655 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.8256 2.0376 0.0872 35 1 5.6183 3.4848 -0.9306 36 1 5.5610 3.3329 2.1172 37 1 6.7284 4.2113 1.0952 38 1 4.8685 8.7452 3.7538 39 1 3.6618 7.7925 2.8508 40 1 3.7306 6.0053 4.4966 41 1 3.5555 7.5302 5.4009 42 1 3.7036 8.1625 9.1154 43 1 6.2349 4.9689 4.4946 44 1 7.4393 5.9237 5.3952 45 1 7.5405 6.1776 2.8503 46 1 7.3666 7.7050 3.7535 47 1 2.8431 5.8159 1.1040 48 1 3.0508 4.3659 2.1205 49 1 3.1136 4.5234 -0.9275 50 1 1.9433 3.6431 0.0869 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069351779.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:42 Heat of formation + Delta-G solvation = -98.315607 kcal Electronic energy + Delta-G solvation = -35067.687153 eV Core-core repulsion = 30451.853701 eV Total energy + Delta-G solvation = -4615.833451 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.166 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.89742 -38.61399 -37.90815 -37.34170 -36.68277 -35.82892 -34.31493 -33.93679 -32.08675 -31.57743 -31.46698 -30.71586 -27.53420 -26.64434 -24.52726 -23.69725 -23.52036 -22.99898 -22.44668 -20.79449 -20.35667 -19.19168 -18.44835 -17.62513 -17.53125 -17.00003 -16.89157 -16.40190 -16.24345 -15.31986 -15.21453 -15.12835 -15.00684 -14.71175 -14.33159 -14.15409 -14.05792 -13.94504 -13.79249 -13.44882 -13.18504 -12.99786 -12.87618 -12.58362 -12.47177 -12.30374 -12.26733 -12.25103 -11.99881 -11.82509 -11.82087 -11.70423 -11.55136 -11.29866 -11.05472 -10.89235 -10.83490 -10.75550 -10.54450 -10.27297 -10.16269 -9.82726 -9.52421 -9.11750 -8.80154 -8.41883 -7.05713 -6.12562 -3.34316 0.56049 1.77903 2.53260 2.80712 3.30642 3.43264 3.46486 3.47694 3.49226 4.22675 4.35880 4.47566 4.56666 4.59350 4.62672 4.79070 4.82932 4.89550 4.92802 4.93367 4.95586 5.03151 5.17057 5.28408 5.32080 5.34152 5.41693 5.51707 5.54827 5.57377 5.61045 5.68462 5.77956 5.85431 5.94001 5.99176 6.00168 6.08897 6.11870 6.31172 6.36852 6.50945 6.52205 6.77777 6.93573 6.98942 7.84691 7.97313 8.21419 8.84671 9.62778 10.02856 11.02049 Molecular weight = 376.17amu Principal moments of inertia in cm(-1) A = 0.009400 B = 0.003320 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.045046 B = 8432.455056 C =10241.726873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.082 3.918 3 O -0.370 6.370 4 C 0.653 3.347 5 O -0.574 6.574 6 N -0.592 5.592 7 C 0.117 3.883 8 C 0.105 3.895 9 N -1.008 6.008 10 S 2.781 3.219 11 O -0.978 6.978 12 O -0.978 6.978 13 N -0.995 5.995 14 C 0.102 3.898 15 C 0.133 3.867 16 N -0.596 5.596 17 C -0.274 4.274 18 H 0.082 0.918 19 C 0.038 3.962 20 N -0.881 5.881 21 Si 0.837 3.163 22 H -0.293 1.293 23 H -0.294 1.294 24 H -0.256 1.256 25 C 0.134 3.866 26 C 0.106 3.894 27 C 0.105 3.895 28 C 0.101 3.899 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.032 0.968 41 H 0.075 0.925 42 H 0.263 0.737 43 H 0.024 0.976 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.106 0.894 48 H 0.077 0.923 49 H 0.078 0.922 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.606 -11.394 -18.987 22.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 O -0.284 6.284 4 C 0.408 3.592 5 O -0.463 6.463 6 N -0.332 5.332 7 C -0.006 4.006 8 C -0.021 4.021 9 N -0.847 5.847 10 S 2.791 3.209 11 O -0.962 6.962 12 O -0.962 6.962 13 N -0.836 5.836 14 C -0.025 4.025 15 C 0.005 3.995 16 N -0.320 5.320 17 C -0.401 4.401 18 H 0.100 0.900 19 C -0.163 4.163 20 N -0.521 5.521 21 Si 0.664 3.336 22 H -0.221 1.221 23 H -0.221 1.221 24 H -0.181 1.181 25 C 0.007 3.993 26 C -0.021 4.021 27 C -0.021 4.021 28 C -0.023 4.023 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.050 0.950 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.042 0.958 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.124 0.876 48 H 0.095 0.905 49 H 0.096 0.904 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.286 -11.117 -19.588 22.927 hybrid contribution -1.020 -0.988 0.578 1.533 sum -5.306 -12.105 -19.011 23.154 Atomic orbital electron populations 1.21834 0.92457 1.03120 1.03633 1.22964 0.94863 0.78609 1.02786 1.86218 1.21967 1.33267 1.86927 1.17950 0.81244 0.83875 0.76179 1.90990 1.59827 1.39278 1.56195 1.46769 1.07409 1.03039 1.76003 1.22016 0.77919 1.01713 0.98976 1.21868 0.94530 0.86767 0.98927 1.58245 1.13423 1.23347 1.89699 1.02034 0.73028 0.72559 0.73272 1.93574 1.39008 1.86491 1.77158 1.93576 1.60838 1.64561 1.77203 1.57800 1.23259 1.71636 1.30945 1.22236 0.88085 0.97089 0.95073 1.21795 0.89398 0.96670 0.91620 1.44173 1.12240 1.66201 1.09355 1.18774 0.95268 1.41180 0.84890 0.90043 1.25239 0.97216 0.97660 0.96177 1.70082 1.30458 1.28697 1.22907 0.87600 0.82848 0.83966 0.79145 1.22107 1.22081 1.18060 1.21307 0.92993 0.93053 0.91992 1.22024 0.83729 1.01332 0.95052 1.21824 0.79887 1.01591 0.98844 1.22119 0.94840 0.86169 0.99155 0.91321 0.91465 0.89981 0.91222 0.91109 0.87354 0.90268 0.90420 0.87363 0.90652 0.90426 0.95039 0.90667 0.92695 0.95808 0.90829 0.90302 0.90883 0.87564 0.90481 0.90375 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.29 37.16 0.38 -0.47 16 2 C 0.08 0.67 6.19 37.16 0.23 0.90 16 3 O -0.37 -3.87 8.85 -40.30 -0.36 -4.22 16 4 C 0.65 7.94 8.43 54.06 0.46 8.39 16 5 O -0.57 -8.41 15.54 -19.28 -0.30 -8.71 16 6 N -0.59 -6.25 2.95 -178.27 -0.53 -6.78 16 7 C 0.12 1.13 6.59 -3.60 -0.02 1.11 16 8 C 0.11 1.07 6.63 -3.55 -0.02 1.04 16 9 N -1.01 -11.59 3.32 -113.18 -0.38 -11.97 16 10 S 2.78 39.42 6.14 -107.50 -0.66 38.76 16 11 O -0.98 -15.35 15.41 -57.17 -0.88 -16.23 16 12 O -0.98 -15.62 15.42 -57.17 -0.88 -16.50 16 13 N -0.99 -15.31 3.32 -113.01 -0.37 -15.68 16 14 C 0.10 1.69 6.58 -3.37 -0.02 1.67 16 15 C 0.13 2.62 4.54 -3.37 -0.02 2.60 16 16 N -0.60 -13.01 2.70 -171.77 -0.46 -13.48 16 17 C -0.27 -7.16 9.86 -15.06 -0.15 -7.30 16 18 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 19 C 0.04 1.05 4.85 -17.43 -0.08 0.96 16 20 N -0.88 -25.67 13.97 55.49 0.78 -24.90 16 21 Si 0.84 20.15 26.43 -169.99 -4.49 15.65 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 24 H -0.26 -5.71 4.82 56.52 0.27 -5.44 16 25 C 0.13 2.36 6.67 -3.60 -0.02 2.34 16 26 C 0.11 1.61 6.55 -3.60 -0.02 1.59 16 27 C 0.11 1.06 6.63 -3.58 -0.02 1.04 16 28 C 0.10 0.91 6.61 -3.59 -0.02 0.88 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.11 1.06 6.99 -51.93 -0.36 0.70 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.11 1.02 6.93 -51.93 -0.36 0.66 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.08 1.13 7.08 -51.93 -0.37 0.76 16 40 H 0.03 0.61 6.69 -51.93 -0.35 0.26 16 41 H 0.08 1.62 5.58 -51.93 -0.29 1.33 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 1.27 7.94 -51.93 -0.41 0.86 16 45 H 0.08 1.03 7.09 -51.93 -0.37 0.66 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 47 H 0.11 1.03 6.93 -51.93 -0.36 0.67 16 48 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.10 0.81 6.91 -51.93 -0.36 0.45 16 LS Contribution 399.70 15.07 6.02 6.02 Total: -1.00 -34.47 399.70 -9.84 -44.32 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.99 Total: -1.04 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 0.66 Total: 14.76 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -0.96 Total: -72.80 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -2.42 Total: -45.67 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.49 Total: 15.65 kcal Atomic # 16 Polarization: 39.42 SS G_CDS: -0.66 Total: 38.76 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.47 -9.84 -44.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069351779.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.999 kcal (2) G-P(sol) polarization free energy of solvation -34.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds