Wall clock time and date at job start Tue Mar 31 2020 06:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45195 * 109.47318 * 2 1 4 4 C 1.34630 * 117.00371 * 180.02562 * 3 2 1 5 5 O 1.21515 * 120.00124 * 359.97438 * 4 3 2 6 6 N 1.34782 * 120.00289 * 179.97438 * 4 3 2 7 7 C 1.46965 * 120.59357 * 180.02562 * 6 4 3 8 8 C 1.53368 * 108.77360 * 235.16089 * 7 6 4 9 9 N 1.47050 * 108.59570 * 310.83097 * 8 7 6 10 10 S 1.65594 * 120.45153 * 235.05439 * 9 8 7 11 11 O 1.42098 * 106.40618 * 23.43933 * 10 9 8 12 12 O 1.42103 * 106.40271 * 156.35877 * 10 9 8 13 13 N 1.65602 * 107.21571 * 269.89544 * 10 9 8 14 14 C 1.46966 * 120.59607 * 269.72152 * 13 10 9 15 15 C 1.53806 * 108.39719 * 124.75922 * 14 13 10 16 16 N 1.46966 * 108.57826 * 49.63746 * 15 14 13 17 17 C 1.36941 * 120.59386 * 124.62481 * 16 15 14 18 18 H 1.07996 * 120.00486 * 207.38649 * 17 16 15 19 19 C 1.38817 * 119.99685 * 27.38264 * 17 16 15 20 20 N 1.31615 * 120.00156 * 215.23640 * 19 17 16 21 21 Si 1.86800 * 119.99933 * 35.24360 * 19 17 16 22 22 H 1.48500 * 109.47121 * 95.37022 * 21 19 17 23 23 H 1.48506 * 109.47038 * 215.36814 * 21 19 17 24 24 H 1.48501 * 109.47281 * 335.36618 * 21 19 17 25 25 C 1.46963 * 118.81364 * 304.64202 * 16 15 14 26 26 C 1.46966 * 120.59059 * 90.00379 * 13 10 9 27 27 C 1.46966 * 118.94935 * 54.95208 * 9 8 7 28 28 C 1.46962 * 120.59407 * 0.02562 * 6 4 3 29 29 H 1.09001 * 109.47315 * 300.00255 * 1 2 3 30 30 H 1.08998 * 109.47136 * 60.00317 * 1 2 3 31 31 H 1.09001 * 109.46700 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47174 * 239.99251 * 2 1 3 33 33 H 1.09005 * 109.46791 * 119.99801 * 2 1 3 34 34 H 1.08996 * 109.61193 * 354.98657 * 7 6 4 35 35 H 1.09000 * 109.61127 * 115.32621 * 7 6 4 36 36 H 1.08999 * 109.61428 * 70.40349 * 8 7 6 37 37 H 1.09001 * 109.60839 * 190.91575 * 8 7 6 38 38 H 1.09001 * 109.60516 * 244.54349 * 14 13 10 39 39 H 1.08997 * 109.60857 * 5.05451 * 14 13 10 40 40 H 1.09003 * 109.74574 * 289.85110 * 15 14 13 41 41 H 1.09000 * 109.67423 * 169.38838 * 15 14 13 42 42 H 0.96998 * 120.00429 * 180.02562 * 20 19 17 43 43 H 1.08993 * 109.61327 * 295.48422 * 25 16 15 44 44 H 1.08998 * 109.74871 * 175.05033 * 25 16 15 45 45 H 1.08996 * 109.61066 * 354.95136 * 26 13 10 46 46 H 1.09003 * 109.60632 * 115.45578 * 26 13 10 47 47 H 1.08996 * 109.60825 * 185.13268 * 27 9 8 48 48 H 1.09000 * 109.60952 * 64.62618 * 27 9 8 49 49 H 1.09003 * 109.61084 * 244.50240 * 28 6 4 50 50 H 1.09005 * 109.60536 * 4.83802 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3488 1.5453 -0.0005 5 8 4.0890 0.5817 -0.0005 6 7 3.8639 2.7908 -0.0011 7 6 5.3189 2.9984 -0.0022 8 6 5.6912 3.8895 1.1892 9 7 4.8047 5.0627 1.1924 10 16 5.4377 6.5929 1.1922 11 8 6.7455 6.4862 0.6467 12 8 4.4359 7.4416 0.6487 13 7 5.6263 7.0455 2.7740 14 6 4.5447 7.7390 3.4876 15 6 4.2167 6.9439 4.7627 16 7 5.4709 6.6648 5.4761 17 6 5.6273 7.0398 6.7838 18 1 6.6132 7.2497 7.1713 19 6 4.5183 7.1504 7.6114 20 7 4.4784 8.0854 8.5369 21 14 3.0827 5.9720 7.4118 22 1 3.2311 4.8447 8.3669 23 1 1.8116 6.6893 7.6864 24 1 3.0638 5.4455 6.0234 25 6 6.5545 5.9763 4.7608 26 6 6.8805 6.7664 3.4874 27 6 3.3498 4.8550 1.1934 28 6 2.9809 3.9655 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.8256 2.0376 0.0872 35 1 5.6183 3.4848 -0.9306 36 1 5.5610 3.3329 2.1172 37 1 6.7284 4.2113 1.0952 38 1 4.8685 8.7452 3.7538 39 1 3.6618 7.7925 2.8508 40 1 3.7306 6.0053 4.4966 41 1 3.5555 7.5302 5.4009 42 1 3.7036 8.1625 9.1154 43 1 6.2349 4.9689 4.4946 44 1 7.4393 5.9237 5.3952 45 1 7.5405 6.1776 2.8503 46 1 7.3666 7.7050 3.7535 47 1 2.8431 5.8159 1.1040 48 1 3.0508 4.3659 2.1205 49 1 3.1136 4.5234 -0.9275 50 1 1.9433 3.6431 0.0869 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069351779.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:41 Heat of formation + Delta-G solvation = -123.727773 kcal Electronic energy + Delta-G solvation = -35068.789107 eV Core-core repulsion = 30451.853701 eV Total energy + Delta-G solvation = -4616.935406 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.166 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.73698 -39.42065 -39.35752 -38.52026 -37.55180 -37.01336 -35.59949 -35.18896 -33.33315 -32.73754 -32.27166 -32.12319 -28.41547 -28.25692 -25.31081 -25.02352 -24.63427 -24.34097 -23.20834 -21.94947 -21.48596 -20.19001 -19.65818 -18.92742 -18.42976 -18.06607 -17.81678 -17.71598 -17.34233 -16.85323 -16.19900 -16.04908 -15.95950 -15.82666 -15.59100 -15.44338 -15.34626 -14.99792 -14.77880 -14.65033 -14.48970 -14.22240 -13.82773 -13.65522 -13.63753 -13.50454 -13.27677 -13.24460 -13.08632 -12.91646 -12.74993 -12.74083 -12.49029 -12.48600 -12.37411 -12.22132 -12.16845 -12.01959 -11.67930 -11.55660 -11.53569 -11.35364 -10.78356 -10.69497 -10.16379 -9.64844 -8.84464 -8.19912 -5.37371 -0.55353 1.01035 1.37496 1.49125 1.54262 1.64006 1.74980 2.37261 2.47508 2.77066 2.96848 3.14788 3.44177 3.52928 3.76170 3.79618 4.02913 4.06280 4.11845 4.14953 4.17279 4.20092 4.27670 4.36254 4.38283 4.47149 4.51697 4.53525 4.61003 4.63370 4.70622 4.79350 4.81680 4.83754 4.91181 4.93866 5.00181 5.09670 5.12092 5.14202 5.26907 5.35012 5.38375 5.38774 5.66895 5.89186 6.15250 6.16277 6.95137 7.11244 7.67234 8.09510 8.98488 Molecular weight = 376.17amu Principal moments of inertia in cm(-1) A = 0.009400 B = 0.003320 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.045046 B = 8432.455056 C =10241.726873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 O -0.370 6.370 4 C 0.649 3.351 5 O -0.605 6.605 6 N -0.591 5.591 7 C 0.116 3.884 8 C 0.105 3.895 9 N -1.003 6.003 10 S 2.799 3.201 11 O -0.992 6.992 12 O -0.994 6.994 13 N -0.999 5.999 14 C 0.111 3.889 15 C 0.129 3.871 16 N -0.611 5.611 17 C -0.259 4.259 18 H 0.048 0.952 19 C -0.017 4.017 20 N -0.934 5.934 21 Si 0.901 3.099 22 H -0.307 1.307 23 H -0.299 1.299 24 H -0.225 1.225 25 C 0.131 3.869 26 C 0.111 3.889 27 C 0.101 3.899 28 C 0.103 3.897 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.117 0.883 38 H 0.063 0.937 39 H 0.103 0.897 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.261 0.739 43 H 0.043 0.957 44 H 0.070 0.930 45 H 0.107 0.893 46 H 0.063 0.937 47 H 0.113 0.887 48 H 0.078 0.922 49 H 0.089 0.911 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.700 -12.805 -21.452 25.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.001 3.999 3 O -0.283 6.283 4 C 0.404 3.596 5 O -0.497 6.497 6 N -0.331 5.331 7 C -0.007 4.007 8 C -0.021 4.021 9 N -0.844 5.844 10 S 2.809 3.191 11 O -0.976 6.976 12 O -0.978 6.978 13 N -0.839 5.839 14 C -0.016 4.016 15 C 0.002 3.998 16 N -0.335 5.335 17 C -0.388 4.388 18 H 0.066 0.934 19 C -0.214 4.214 20 N -0.578 5.578 21 Si 0.728 3.272 22 H -0.236 1.236 23 H -0.226 1.226 24 H -0.149 1.149 25 C 0.005 3.995 26 C -0.015 4.015 27 C -0.025 4.025 28 C -0.021 4.021 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.135 0.865 38 H 0.081 0.919 39 H 0.121 0.879 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.125 0.875 46 H 0.082 0.918 47 H 0.131 0.869 48 H 0.097 0.903 49 H 0.107 0.893 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.385 -12.532 -22.106 25.976 hybrid contribution -0.602 -0.571 1.277 1.523 sum -5.987 -13.103 -20.829 25.326 Atomic orbital electron populations 1.21838 0.90248 1.04440 1.03740 1.23208 0.96517 0.77680 1.02503 1.86232 1.20974 1.34524 1.86613 1.18148 0.81574 0.83989 0.75914 1.90965 1.60610 1.40386 1.57738 1.46907 1.07937 1.02994 1.75234 1.22069 0.77639 1.01606 0.99350 1.21981 0.94733 0.86165 0.99200 1.58051 1.14324 1.22699 1.89330 1.01421 0.72430 0.72711 0.72510 1.93556 1.39935 1.86880 1.77217 1.93554 1.61213 1.65673 1.77347 1.57855 1.22894 1.71923 1.31227 1.22014 0.89431 0.95920 0.94272 1.21840 0.88267 0.97333 0.92368 1.44291 1.13971 1.67068 1.08167 1.18708 0.93795 1.39416 0.86893 0.93378 1.25766 1.00195 0.98894 0.96557 1.70181 1.31723 1.30829 1.25055 0.86591 0.79379 0.80990 0.80223 1.23555 1.22587 1.14862 1.21472 0.91653 0.93902 0.92514 1.21928 0.84137 1.00986 0.94491 1.21990 0.78853 1.02206 0.99465 1.22226 0.95276 0.85415 0.99157 0.91458 0.91017 0.88067 0.91251 0.91751 0.87585 0.89100 0.90266 0.86522 0.91853 0.87895 0.93597 0.92793 0.92995 0.93881 0.91159 0.87478 0.91807 0.86908 0.90321 0.89266 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.29 71.98 0.74 -0.55 16 2 C 0.08 1.12 6.19 71.98 0.45 1.56 16 3 O -0.37 -7.05 8.85 -55.39 -0.49 -7.54 16 4 C 0.65 14.67 8.43 129.79 1.09 15.77 16 5 O -0.61 -17.14 15.54 19.79 0.31 -16.84 16 6 N -0.59 -11.03 2.95 -948.31 -2.80 -13.83 16 7 C 0.12 1.97 6.59 86.41 0.57 2.53 16 8 C 0.11 1.81 6.63 86.40 0.57 2.38 16 9 N -1.00 -19.77 3.32 -512.00 -1.70 -21.48 16 10 S 2.80 70.90 6.14 -56.49 -0.35 70.55 16 11 O -0.99 -28.18 15.41 -128.00 -1.97 -30.15 16 12 O -0.99 -28.80 15.42 -128.00 -1.97 -30.77 16 13 N -1.00 -28.13 3.32 -511.44 -1.70 -29.82 16 14 C 0.11 3.44 6.58 86.56 0.57 4.01 16 15 C 0.13 4.82 4.54 86.56 0.39 5.21 16 16 N -0.61 -26.01 2.70 -697.36 -1.88 -27.89 16 17 C -0.26 -13.73 9.86 84.03 0.83 -12.90 16 18 H 0.05 2.81 8.06 -2.91 -0.02 2.79 16 19 C -0.02 -0.93 4.85 84.86 0.41 -0.52 16 20 N -0.93 -56.18 13.97 21.65 0.30 -55.88 16 21 Si 0.90 41.91 26.43 68.60 1.81 43.72 16 22 H -0.31 -14.86 7.11 99.48 0.71 -14.15 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.23 -9.21 4.82 99.48 0.48 -8.73 16 25 C 0.13 4.37 6.67 86.42 0.58 4.94 16 26 C 0.11 3.15 6.55 86.42 0.57 3.71 16 27 C 0.10 1.70 6.63 86.42 0.57 2.27 16 28 C 0.10 1.52 6.61 86.42 0.57 2.09 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 31 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.11 1.89 6.99 -2.39 -0.02 1.87 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.12 1.83 6.93 -2.39 -0.02 1.82 16 38 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.10 2.68 7.08 -2.39 -0.02 2.66 16 40 H 0.05 1.60 6.69 -2.39 -0.02 1.59 16 41 H 0.05 2.26 5.58 -2.39 -0.01 2.25 16 42 H 0.26 14.97 8.31 -92.71 -0.77 14.19 16 43 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.07 2.37 7.94 -2.39 -0.02 2.35 16 45 H 0.11 2.45 7.09 -2.39 -0.02 2.43 16 46 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.11 1.79 6.93 -2.39 -0.02 1.77 16 48 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.12 1.45 6.91 -2.38 -0.02 1.43 16 Total: -1.00 -74.53 399.70 -1.81 -76.33 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.72 Total: 13.06 kcal Atomic # 6 Polarization: 22.61 SS G_CDS: 7.91 Total: 30.52 kcal Atomic # 7 Polarization: -141.12 SS G_CDS: -7.77 Total: -148.90 kcal Atomic # 8 Polarization: -81.16 SS G_CDS: -4.13 Total: -85.29 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.81 Total: 43.72 kcal Atomic # 16 Polarization: 70.90 SS G_CDS: -0.35 Total: 70.55 kcal Total: -74.53 -1.81 -76.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069351779.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.394 kcal (2) G-P(sol) polarization free energy of solvation -74.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds