Wall clock time and date at job start Tue Mar 31 2020 05:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.39868 * 125.89771 * 2 1 4 4 C 1.35309 * 107.92170 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.13245 * 179.97438 * 4 3 2 6 6 N 1.34955 * 107.74289 * 0.02562 * 4 3 2 7 7 C 1.46500 * 126.03327 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47476 * 270.02650 * 7 6 4 9 9 H 1.09004 * 109.50393 * 54.91270 * 8 7 6 10 10 C 1.53094 * 109.50991 * 175.00200 * 8 7 6 11 11 N 1.47011 * 109.26344 * 176.78486 * 10 8 7 12 12 C 1.46889 * 111.00520 * 177.60887 * 11 10 8 13 13 C 1.53000 * 109.47413 * 170.00154 * 12 11 10 14 14 C 1.50702 * 109.47408 * 180.02562 * 13 12 11 15 15 O 1.21295 * 119.99485 * 359.97438 * 14 13 12 16 16 N 1.34769 * 120.00373 * 179.97438 * 14 13 12 17 17 C 1.37099 * 120.00162 * 179.97438 * 16 14 13 18 18 H 1.07995 * 119.99958 * 322.47938 * 17 16 14 19 19 C 1.38951 * 119.99800 * 142.47909 * 17 16 14 20 20 N 1.31404 * 120.00306 * 157.59593 * 19 17 16 21 21 Si 1.86804 * 120.00012 * 337.59617 * 19 17 16 22 22 H 1.48498 * 109.47484 * 95.70695 * 21 19 17 23 23 H 1.48504 * 109.47108 * 215.70748 * 21 19 17 24 24 H 1.48497 * 109.46985 * 335.70356 * 21 19 17 25 25 C 1.46502 * 119.99780 * 359.97438 * 16 14 13 26 26 C 1.47199 * 109.47126 * 83.80024 * 25 16 14 27 27 N 9.45664 * 123.14053 * 268.51457 * 7 1 2 28 28 C 1.47011 * 110.75197 * 301.38752 * 11 10 8 29 29 C 1.53107 * 109.25964 * 58.60937 * 28 11 10 30 30 O 1.43006 * 109.25814 * 303.15520 * 29 28 11 31 31 N 1.30831 * 125.89717 * 180.02562 * 2 1 3 32 32 H 1.08993 * 109.47445 * 269.97998 * 1 2 3 33 33 H 1.08994 * 109.46942 * 29.98222 * 1 2 3 34 34 H 1.08998 * 109.46887 * 149.97293 * 1 2 3 35 35 H 1.07999 * 126.03931 * 0.06058 * 3 2 1 36 36 H 1.09002 * 109.47595 * 90.02072 * 5 4 3 37 37 H 1.08999 * 109.47587 * 210.03035 * 5 4 3 38 38 H 1.09010 * 109.46935 * 330.02734 * 5 4 3 39 39 H 1.08994 * 109.47626 * 30.03222 * 7 6 4 40 40 H 1.09006 * 109.46955 * 150.03151 * 7 6 4 41 41 H 1.09008 * 109.51005 * 296.72456 * 10 8 7 42 42 H 1.09005 * 109.50495 * 56.84688 * 10 8 7 43 43 H 1.09008 * 109.47272 * 290.00049 * 12 11 10 44 44 H 1.09002 * 109.47139 * 50.00093 * 12 11 10 45 45 H 1.08998 * 109.47247 * 299.99842 * 13 12 11 46 46 H 1.09002 * 109.47018 * 59.99865 * 13 12 11 47 47 H 0.97003 * 120.00685 * 179.97438 * 20 19 17 48 48 H 1.09007 * 109.47168 * 203.79822 * 25 16 14 49 49 H 1.08996 * 109.47278 * 323.79720 * 25 16 14 50 50 H 1.09002 * 109.50972 * 178.54480 * 28 11 10 51 51 H 1.09004 * 109.50669 * 298.63560 * 28 11 10 52 52 H 1.09000 * 109.50206 * 63.08793 * 29 28 11 53 53 H 1.09001 * 109.50598 * 183.17223 * 29 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7154 -0.0006 5 6 4.8351 1.5989 -0.0013 6 7 3.6088 -0.6341 -0.0015 7 6 4.7900 -1.5007 -0.0029 8 6 5.2006 -1.8009 -1.4458 9 1 5.3466 -0.8648 -1.9849 10 6 6.5052 -2.6021 -1.4500 11 7 6.8540 -2.9537 -2.8341 12 6 8.1319 -3.6761 -2.8878 13 6 8.3403 -4.2401 -4.2947 14 6 9.6511 -4.9817 -4.3496 15 8 10.3500 -5.0518 -3.3608 16 7 10.0467 -5.5670 -5.4973 17 6 11.2394 -6.2413 -5.5473 18 1 12.0953 -5.8652 -5.0068 19 6 11.3468 -7.4085 -6.2935 20 7 12.5243 -7.8151 -6.7115 21 14 9.8171 -8.3997 -6.7026 22 1 9.3275 -8.0201 -8.0522 23 1 10.1461 -9.8477 -6.6845 24 1 8.7618 -8.1192 -5.6962 25 6 9.2022 -5.4828 -6.6914 26 6 9.4606 -4.2112 -7.3865 27 7 9.6620 -3.2270 -7.9219 28 6 5.7790 -3.7379 -3.4591 29 6 4.4816 -2.9252 -3.4348 30 8 4.1752 -2.5660 -2.0850 31 7 2.2742 -1.0598 -0.0005 32 1 -0.3634 -0.0004 1.0276 33 1 -0.3633 0.8901 -0.5135 34 1 -0.3633 -0.8897 -0.5142 35 1 1.9923 2.1598 0.0009 36 1 5.1302 1.8118 1.0261 37 1 5.6508 1.0911 -0.5159 38 1 4.6072 2.5331 -0.5148 39 1 5.6095 -0.9988 0.5112 40 1 4.5566 -2.4338 0.5100 41 1 7.3034 -2.0004 -1.0151 42 1 6.3750 -3.5126 -0.8649 43 1 8.9461 -2.9927 -2.6460 44 1 8.1177 -4.4937 -2.1671 45 1 7.5263 -4.9234 -4.5365 46 1 8.3546 -3.4225 -5.0155 47 1 12.5994 -8.6302 -7.2321 48 1 9.4314 -6.3143 -7.3580 49 1 8.1533 -5.5303 -6.3988 50 1 6.0468 -3.9651 -4.4910 51 1 5.6376 -4.6668 -2.9066 52 1 4.6065 -2.0222 -4.0324 53 1 3.6691 -3.5243 -3.8461 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069368337.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:14 Heat of formation + Delta-G solvation = 26.252394 kcal Electronic energy + Delta-G solvation = -34327.741322 eV Core-core repulsion = 29815.417349 eV Total energy + Delta-G solvation = -4512.323972 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 375.206 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.21039 -41.13824 -40.48030 -37.97077 -37.22089 -36.41492 -35.50279 -34.22224 -33.39617 -32.46261 -31.92752 -30.12171 -29.40485 -28.46248 -27.82937 -26.94505 -25.61450 -24.65760 -22.94038 -21.52832 -21.23211 -20.60881 -20.24908 -20.16388 -18.56736 -18.13788 -17.68206 -17.42302 -17.29389 -17.09334 -16.66365 -16.30209 -16.08649 -15.61445 -15.53740 -15.38029 -15.13127 -14.86719 -14.76861 -14.70787 -14.63690 -14.23403 -14.11973 -14.04799 -13.87433 -13.73909 -13.64116 -13.44596 -13.35238 -13.20326 -13.13141 -13.02775 -12.85924 -12.69237 -12.65854 -12.35514 -12.32194 -12.19503 -11.91712 -11.78493 -11.58277 -11.34594 -11.11841 -10.68644 -10.50936 -9.98403 -9.94602 -9.45418 -9.37321 -8.49770 -6.19068 0.95908 1.24807 1.39203 1.43543 1.52599 1.57085 1.71200 1.85710 1.89462 2.21818 2.48058 2.65865 2.78982 2.94960 3.17353 3.58985 3.68472 3.75532 3.80269 3.84915 3.92413 3.93168 3.99171 4.04688 4.11910 4.15166 4.23443 4.28414 4.34683 4.43713 4.46563 4.52804 4.56715 4.60204 4.72901 4.77301 4.81137 4.82158 4.84740 4.86631 4.95532 4.99081 5.01871 5.07287 5.12665 5.37545 5.46700 5.82539 5.85313 5.88520 6.03890 6.10579 6.22732 6.40755 6.49084 6.87812 6.88581 7.17141 7.71607 8.66853 Molecular weight = 375.21amu Principal moments of inertia in cm(-1) A = 0.018393 B = 0.001747 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.977817 B =16024.320873 C =16198.981885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.051 3.949 3 C -0.292 4.292 4 C 0.079 3.921 5 C -0.093 4.093 6 N -0.370 5.370 7 C 0.138 3.862 8 C 0.088 3.912 9 H 0.066 0.934 10 C 0.027 3.973 11 N -0.538 5.538 12 C 0.085 3.915 13 C -0.132 4.132 14 C 0.473 3.527 15 O -0.597 6.597 16 N -0.473 5.473 17 C -0.343 4.343 18 H 0.043 0.957 19 C 0.011 3.989 20 N -0.907 5.907 21 Si 0.930 3.070 22 H -0.227 1.227 23 H -0.290 1.290 24 H -0.230 1.230 25 C 0.178 3.822 26 C 0.219 3.781 27 N -0.466 5.466 28 C 0.006 3.994 29 C 0.066 3.934 30 O -0.390 6.390 31 N -0.325 5.325 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.162 0.838 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.139 0.861 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.035 0.965 45 H 0.125 0.875 46 H 0.102 0.898 47 H 0.282 0.718 48 H 0.115 0.885 49 H 0.170 0.830 50 H 0.109 0.891 51 H 0.044 0.956 52 H 0.055 0.945 53 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.869 14.109 10.461 30.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.115 4.115 3 C -0.320 4.320 4 C -0.048 4.048 5 C -0.151 4.151 6 N -0.152 5.152 7 C 0.016 3.984 8 C 0.029 3.971 9 H 0.084 0.916 10 C -0.102 4.102 11 N -0.263 5.263 12 C -0.043 4.043 13 C -0.172 4.172 14 C 0.263 3.737 15 O -0.479 6.479 16 N -0.196 5.196 17 C -0.471 4.471 18 H 0.061 0.939 19 C -0.192 4.192 20 N -0.543 5.543 21 Si 0.751 3.249 22 H -0.151 1.151 23 H -0.217 1.217 24 H -0.152 1.152 25 C 0.052 3.948 26 C -0.099 4.099 27 N -0.146 5.146 28 C -0.122 4.122 29 C -0.010 4.010 30 O -0.309 6.309 31 N -0.148 5.148 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.179 0.821 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.157 0.843 40 H 0.114 0.886 41 H 0.122 0.878 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.054 0.946 45 H 0.142 0.858 46 H 0.121 0.879 47 H 0.091 0.909 48 H 0.133 0.867 49 H 0.187 0.813 50 H 0.127 0.873 51 H 0.062 0.938 52 H 0.074 0.926 53 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -24.032 14.422 9.911 29.728 hybrid contribution 0.752 -1.063 0.194 1.316 sum -23.280 13.359 10.105 28.680 Atomic orbital electron populations 1.20233 0.85152 1.03751 1.03565 1.22906 0.98310 0.91013 0.99260 1.21426 0.91218 1.00310 1.19084 1.21724 0.98616 0.84525 0.99982 1.20606 0.91743 0.98151 1.04588 1.48501 1.05003 1.04404 1.57322 1.21862 0.85060 0.95775 0.95689 1.22487 0.86813 0.94430 0.93409 0.91558 1.22715 0.97649 1.00167 0.89620 1.62276 1.02457 1.43959 1.17592 1.21624 0.91018 0.96505 0.95153 1.21802 0.94586 1.01000 0.99834 1.21230 0.88693 0.81707 0.82050 1.90569 1.58115 1.63266 1.35938 1.43650 1.19505 1.49501 1.06897 1.18574 0.87617 1.07348 1.33560 0.93899 1.26288 1.00924 0.96925 0.95028 1.69885 1.27128 1.23914 1.33409 0.86099 0.79672 0.77871 0.81302 1.15082 1.21653 1.15244 1.19934 0.99329 0.88098 0.87431 1.30238 0.92022 0.94880 0.92808 1.81201 1.09588 1.13150 1.10624 1.23046 0.91605 0.95556 1.02015 1.22750 0.96566 0.98827 0.82886 1.88087 1.42541 1.72936 1.27310 1.77350 0.87344 1.23841 1.26246 0.89709 0.88811 0.91591 0.82065 0.88610 0.90392 0.88401 0.84281 0.88557 0.87820 0.93549 0.91102 0.94644 0.85755 0.87949 0.90863 0.86722 0.81329 0.87278 0.93783 0.92629 0.86977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.45 71.24 0.74 -0.20 16 2 C 0.05 1.07 7.22 43.11 0.31 1.39 16 3 C -0.29 -5.24 10.65 21.99 0.23 -5.00 16 4 C 0.08 1.34 6.93 41.40 0.29 1.62 16 5 C -0.09 -0.82 9.90 71.23 0.71 -0.12 16 6 N -0.37 -7.59 3.56 -334.70 -1.19 -8.78 16 7 C 0.14 2.17 5.73 86.38 0.50 2.66 16 8 C 0.09 1.57 3.05 30.63 0.09 1.66 16 9 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 10 C 0.03 0.49 4.91 86.31 0.42 0.91 16 11 N -0.54 -11.24 4.88 -895.21 -4.36 -15.60 16 12 C 0.08 2.22 4.57 86.31 0.39 2.61 16 13 C -0.13 -3.53 3.58 29.85 0.11 -3.43 16 14 C 0.47 19.07 7.56 87.66 0.66 19.73 16 15 O -0.60 -29.90 15.85 -3.07 -0.05 -29.95 16 16 N -0.47 -19.91 2.15 -645.42 -1.39 -21.30 16 17 C -0.34 -18.49 9.36 84.04 0.79 -17.70 16 18 H 0.04 2.80 7.91 -2.91 -0.02 2.78 16 19 C 0.01 0.58 5.26 84.93 0.45 1.03 16 20 N -0.91 -50.89 13.96 21.66 0.30 -50.59 16 21 Si 0.93 34.65 25.05 68.60 1.72 36.37 16 22 H -0.23 -6.94 6.69 99.48 0.67 -6.27 16 23 H -0.29 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.23 -7.56 7.11 99.48 0.71 -6.86 16 25 C 0.18 5.48 4.27 84.57 0.36 5.84 16 26 C 0.22 7.41 15.01 89.41 1.34 8.76 16 27 N -0.47 -17.52 18.55 20.03 0.37 -17.15 16 28 C 0.01 0.10 4.94 86.32 0.43 0.53 16 29 C 0.07 1.20 7.01 72.02 0.50 1.71 16 30 O -0.39 -8.78 10.42 -148.98 -1.55 -10.34 16 31 N -0.33 -8.30 12.58 -47.38 -0.60 -8.90 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.08 0.60 7.72 -2.39 -0.02 0.59 16 38 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.14 1.21 7.66 -2.39 -0.02 1.20 16 40 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.07 2.08 8.10 -2.38 -0.02 2.06 16 44 H 0.04 1.01 8.04 -2.39 -0.02 0.99 16 45 H 0.12 2.42 5.55 -2.39 -0.01 2.41 16 46 H 0.10 2.57 7.48 -2.39 -0.02 2.55 16 47 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 48 H 0.12 3.60 3.61 -2.38 -0.01 3.60 16 49 H 0.17 3.12 6.70 -2.39 -0.02 3.10 16 50 H 0.11 1.60 6.05 -2.39 -0.01 1.59 16 51 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 52 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 53 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -81.24 431.17 2.46 -78.78 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.88 Total: 25.46 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 8.32 Total: 22.00 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -6.87 Total: -122.33 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -1.60 Total: -40.28 kcal Atomic # 14 Polarization: 34.65 SS G_CDS: 1.72 Total: 36.37 kcal Total: -81.24 2.46 -78.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069368337.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.031 kcal (2) G-P(sol) polarization free energy of solvation -81.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds