Wall clock time and date at job start Tue Mar 31 2020 06:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29942 * 126.28851 * 2 1 4 4 O 1.21309 * 110.24577 * 179.68416 * 3 2 1 5 5 C 1.33635 * 109.81540 * 0.46600 * 4 3 2 6 6 C 1.50699 * 126.55528 * 179.80464 * 5 4 3 7 7 H 1.08993 * 109.47299 * 166.52260 * 6 5 4 8 8 C 1.53005 * 109.46934 * 286.52422 * 6 5 4 9 9 N 1.46902 * 109.47165 * 46.51628 * 6 5 4 10 10 C 1.46962 * 110.99484 * 55.79355 * 9 6 5 11 11 C 1.53049 * 109.36308 * 183.18825 * 10 9 6 12 12 N 1.46958 * 109.36257 * 301.59958 * 11 10 9 13 13 C 1.46902 * 111.00014 * 183.18914 * 12 11 10 14 14 C 1.52995 * 109.47471 * 169.99752 * 13 12 11 15 15 C 1.50697 * 109.47721 * 180.02562 * 14 13 12 16 16 O 1.21295 * 119.99478 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00425 * 180.02562 * 15 14 13 18 18 C 1.37100 * 119.99893 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00006 * 16.63312 * 18 17 15 20 20 C 1.38952 * 119.99952 * 196.63221 * 18 17 15 21 21 N 1.31411 * 119.99820 * 19.31423 * 20 18 17 22 22 Si 1.86798 * 120.00009 * 199.31789 * 20 18 17 23 23 H 1.48499 * 109.47217 * 59.99903 * 22 20 18 24 24 H 1.48502 * 109.46904 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46935 * 299.99857 * 22 20 18 26 26 C 1.46499 * 120.00026 * 359.71846 * 17 15 14 27 27 C 1.47199 * 109.46999 * 84.55428 * 26 17 15 28 28 N 8.75026 * 157.79202 * 66.01244 * 6 1 2 29 29 C 1.46954 * 110.88400 * 59.31981 * 12 11 10 30 30 C 1.46958 * 111.00014 * 179.58827 * 9 6 5 31 31 N 1.31138 * 106.89658 * 359.53995 * 5 4 3 32 32 H 1.08996 * 109.47337 * 270.02671 * 1 2 3 33 33 H 1.09006 * 109.46874 * 30.02871 * 1 2 3 34 34 H 1.09004 * 109.47326 * 150.02418 * 1 2 3 35 35 H 1.08998 * 109.47399 * 180.02562 * 8 6 5 36 36 H 1.09005 * 109.46849 * 299.99290 * 8 6 5 37 37 H 1.08994 * 109.47148 * 59.99273 * 8 6 5 38 38 H 1.09000 * 109.48914 * 63.22136 * 10 9 6 39 39 H 1.09005 * 109.50910 * 303.16501 * 10 9 6 40 40 H 1.09002 * 109.48861 * 181.63192 * 11 10 9 41 41 H 1.09007 * 109.50913 * 61.57429 * 11 10 9 42 42 H 1.09007 * 109.47106 * 49.99829 * 13 12 11 43 43 H 1.09001 * 109.46942 * 289.99715 * 13 12 11 44 44 H 1.08999 * 109.47132 * 59.99654 * 14 13 12 45 45 H 1.09006 * 109.47118 * 300.00401 * 14 13 12 46 46 H 0.96993 * 120.00059 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.47344 * 204.56083 * 26 17 15 48 48 H 1.09003 * 109.47143 * 324.55811 * 26 17 15 49 49 H 1.09000 * 109.48668 * 60.64530 * 29 12 11 50 50 H 1.08994 * 109.49069 * 180.71031 * 29 12 11 51 51 H 1.08996 * 109.48928 * 296.78324 * 30 9 6 52 52 H 1.09001 * 109.48282 * 56.82820 * 30 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7122 0.0063 5 6 3.5299 -0.6213 0.0008 6 6 4.7969 -1.4372 0.0014 7 1 4.5605 -2.4751 0.2356 8 6 5.4523 -1.3624 -1.3791 9 7 5.7213 -0.9054 1.0117 10 6 5.0881 -0.8687 2.3374 11 6 6.0529 -0.2365 3.3433 12 7 7.2987 -1.0153 3.3792 13 6 8.2231 -0.4835 4.3895 14 6 9.3905 -1.4549 4.5743 15 6 10.3385 -0.9098 5.6112 16 8 10.1036 0.1517 6.1491 17 7 11.4477 -1.6011 5.9400 18 6 12.3103 -1.1048 6.8830 19 1 11.9876 -0.3188 7.5496 20 6 13.5998 -1.6131 6.9810 21 7 14.1251 -2.2711 5.9720 22 14 14.5865 -1.3612 8.5470 23 1 13.8687 -1.9813 9.6895 24 1 15.9216 -1.9943 8.3980 25 1 14.7541 0.0928 8.7979 26 6 11.7288 -2.8855 5.2939 27 6 12.4144 -2.6507 4.0127 28 7 12.9431 -2.4713 3.0241 29 6 7.9319 -1.0521 2.0535 30 6 6.9670 -1.6843 1.0477 31 7 2.3029 -1.0842 0.0005 32 1 -0.3634 0.0005 1.0276 33 1 -0.3633 0.8898 -0.5143 34 1 -0.3634 -0.8902 -0.5135 35 1 6.3685 -1.9529 -1.3789 36 1 4.7664 -1.7570 -2.1288 37 1 5.6886 -0.3245 -1.6133 38 1 4.8468 -1.8836 2.6534 39 1 4.1744 -0.2762 2.2881 40 1 5.5966 -0.2346 4.3331 41 1 6.2730 0.7878 3.0423 42 1 7.6966 -0.3639 5.3365 43 1 8.6036 0.4835 4.0606 44 1 9.9169 -1.5746 3.6274 45 1 9.0099 -2.4220 4.9031 46 1 15.0254 -2.6256 6.0403 47 1 12.3661 -3.4867 5.9423 48 1 10.7926 -3.4140 5.1134 49 1 8.1731 -0.0372 1.7375 50 1 8.8453 -1.6447 2.1031 51 1 6.7470 -2.7084 1.3490 52 1 7.4231 -1.6864 0.0577 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069370373.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:07 Heat of formation + Delta-G solvation = 71.382031 kcal Electronic energy + Delta-G solvation = -34559.412665 eV Core-core repulsion = 29983.619750 eV Total energy + Delta-G solvation = -4575.792915 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 376.201 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -46.67152 -40.89999 -40.34198 -37.88647 -37.45081 -37.04773 -36.14761 -34.40880 -33.74987 -32.81630 -31.79172 -30.97659 -30.03035 -29.11930 -27.57979 -26.36993 -25.80381 -24.52055 -23.94099 -23.34774 -21.70408 -20.75921 -20.56020 -19.70594 -19.26099 -18.53314 -18.25281 -17.96874 -17.22119 -17.01001 -16.51771 -16.36555 -16.04928 -15.85949 -15.60871 -15.49828 -15.36304 -14.98533 -14.67655 -14.65526 -14.48481 -14.21219 -14.07218 -13.92454 -13.73477 -13.59100 -13.39019 -13.29976 -13.23469 -13.04040 -12.91799 -12.79876 -12.75938 -12.60713 -12.35879 -12.30791 -12.29482 -12.25645 -12.12387 -12.09912 -11.93428 -11.69999 -11.59149 -11.09014 -10.95696 -10.39923 -9.90346 -9.57639 -9.33514 -8.37698 -5.93938 0.04487 1.11414 1.42161 1.49170 1.57619 1.74397 1.85565 2.08920 2.29891 2.31094 2.37211 2.73201 2.84558 3.03488 3.09040 3.31057 3.65040 3.69944 3.77325 3.90747 3.93945 4.05749 4.13261 4.14383 4.24253 4.32695 4.38123 4.42725 4.46329 4.51848 4.55857 4.57462 4.62138 4.70362 4.71378 4.76300 4.85381 4.86617 4.89278 4.97516 4.97984 5.02147 5.04527 5.06871 5.13036 5.25131 5.50308 5.73775 5.81230 6.02433 6.04096 6.11269 6.43005 7.04474 7.09886 7.15016 7.39153 7.95775 8.65226 Molecular weight = 376.20amu Principal moments of inertia in cm(-1) A = 0.022500 B = 0.001664 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.159058 B =16818.652477 C =17671.282277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.163 3.837 3 N -0.414 5.414 4 O 0.075 5.925 5 C 0.201 3.799 6 C 0.177 3.823 7 H 0.104 0.896 8 C -0.145 4.145 9 N -0.543 5.543 10 C 0.069 3.931 11 C 0.060 3.940 12 N -0.532 5.532 13 C 0.087 3.913 14 C -0.115 4.115 15 C 0.449 3.551 16 O -0.621 6.621 17 N -0.456 5.456 18 C -0.340 4.340 19 H 0.081 0.919 20 C 0.005 3.995 21 N -0.894 5.894 22 Si 0.985 3.015 23 H -0.261 1.261 24 H -0.279 1.279 25 H -0.285 1.285 26 C 0.221 3.779 27 C 0.260 3.740 28 N -0.508 5.508 29 C 0.048 3.952 30 C 0.065 3.935 31 N -0.499 5.499 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.030 0.970 42 H 0.074 0.926 43 H 0.015 0.985 44 H 0.085 0.915 45 H 0.123 0.877 46 H 0.274 0.726 47 H 0.125 0.875 48 H 0.139 0.861 49 H 0.029 0.971 50 H 0.088 0.912 51 H 0.062 0.938 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.001 -5.882 -12.609 26.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 N -0.125 5.125 4 O 0.020 5.980 5 C -0.020 4.020 6 C 0.067 3.933 7 H 0.121 0.879 8 C -0.203 4.203 9 N -0.270 5.270 10 C -0.060 4.060 11 C -0.068 4.068 12 N -0.257 5.257 13 C -0.041 4.041 14 C -0.155 4.155 15 C 0.240 3.760 16 O -0.507 6.507 17 N -0.176 5.176 18 C -0.467 4.467 19 H 0.099 0.901 20 C -0.197 4.197 21 N -0.533 5.533 22 Si 0.810 3.190 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.211 1.211 26 C 0.095 3.905 27 C -0.058 4.058 28 N -0.189 5.189 29 C -0.080 4.080 30 C -0.062 4.062 31 N -0.234 5.234 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.034 0.966 44 H 0.103 0.897 45 H 0.141 0.859 46 H 0.084 0.916 47 H 0.143 0.857 48 H 0.156 0.844 49 H 0.048 0.952 50 H 0.107 0.893 51 H 0.080 0.920 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -22.778 -4.690 -13.839 27.062 hybrid contribution 1.043 0.700 1.296 1.805 sum -21.736 -3.990 -12.543 25.410 Atomic orbital electron populations 1.20358 0.80354 1.05839 1.05536 1.26649 1.02125 0.82985 0.99205 1.74686 0.89878 1.25020 1.22925 1.85329 1.21981 1.25226 1.65462 1.29021 0.96886 0.82003 0.94084 1.20290 0.82986 0.93923 0.96057 0.87879 1.21977 1.02225 1.04282 0.91859 1.62209 1.05355 1.54155 1.05303 1.22040 0.95747 1.00325 0.87846 1.22100 0.90274 0.94914 0.99502 1.62211 1.05004 1.52549 1.05899 1.21541 0.92427 0.94569 0.95568 1.21472 0.94834 1.01706 0.97482 1.21046 0.84530 0.84847 0.85616 1.90516 1.77197 1.25066 1.57959 1.43800 1.20141 1.18125 1.35498 1.19591 0.93747 1.21957 1.11421 0.90122 1.25841 0.96730 0.96700 1.00403 1.69908 1.16483 1.37543 1.29369 0.85107 0.77160 0.77977 0.78779 1.18561 1.20386 1.21108 1.19108 0.99764 0.87061 0.84602 1.29737 0.91188 0.91712 0.93163 1.80874 1.12048 1.09232 1.16735 1.22306 0.97679 1.00028 0.87974 1.22282 0.88202 0.95398 1.00314 1.71933 0.99865 1.29920 1.21639 0.87993 0.88456 0.87649 0.88180 0.90410 0.91463 0.92557 0.92167 0.89518 0.95156 0.90718 0.96638 0.89690 0.85900 0.91566 0.85725 0.84356 0.95220 0.89336 0.91969 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.64 10.51 71.24 0.75 0.10 16 2 C 0.16 3.14 8.22 138.46 1.14 4.28 16 3 N -0.41 -9.61 12.16 -60.32 -0.73 -10.34 16 4 O 0.07 1.71 11.16 74.90 0.84 2.54 16 5 C 0.20 3.77 5.61 88.38 0.50 4.27 16 6 C 0.18 2.43 2.62 44.17 0.12 2.54 16 7 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 8 C -0.15 -1.43 8.96 71.98 0.64 -0.79 16 9 N -0.54 -8.98 4.57 -874.85 -4.00 -12.98 16 10 C 0.07 1.27 5.34 86.31 0.46 1.73 16 11 C 0.06 1.32 5.61 86.31 0.48 1.80 16 12 N -0.53 -12.42 4.71 -895.71 -4.22 -16.64 16 13 C 0.09 2.61 4.25 86.30 0.37 2.97 16 14 C -0.11 -3.53 4.24 29.85 0.13 -3.40 16 15 C 0.45 19.47 7.57 87.66 0.66 20.14 16 16 O -0.62 -32.34 15.62 -3.08 -0.05 -32.39 16 17 N -0.46 -20.43 2.60 -645.42 -1.68 -22.11 16 18 C -0.34 -17.38 9.36 84.04 0.79 -16.59 16 19 H 0.08 4.49 7.36 -2.91 -0.02 4.46 16 20 C 0.01 0.24 4.93 84.93 0.42 0.66 16 21 N -0.89 -43.60 9.32 21.66 0.20 -43.40 16 22 Si 0.99 39.71 29.59 68.60 2.03 41.74 16 23 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 24 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 25 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 26 C 0.22 8.02 4.91 84.57 0.42 8.43 16 27 C 0.26 10.67 13.03 89.45 1.17 11.83 16 28 N -0.51 -22.78 18.53 20.00 0.37 -22.40 16 29 C 0.05 1.01 5.41 86.31 0.47 1.48 16 30 C 0.06 0.96 5.33 86.31 0.46 1.42 16 31 N -0.50 -9.95 11.55 -303.21 -3.50 -13.45 16 32 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.10 0.64 6.34 -2.39 -0.02 0.63 16 36 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 1.21 6.74 -2.38 -0.02 1.20 16 40 H 0.09 1.80 8.07 -2.39 -0.02 1.78 16 41 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.07 2.34 7.98 -2.38 -0.02 2.32 16 43 H 0.02 0.54 8.08 -2.39 -0.02 0.52 16 44 H 0.08 2.54 5.88 -2.39 -0.01 2.53 16 45 H 0.12 2.99 7.41 -2.38 -0.02 2.97 16 46 H 0.27 12.98 8.31 -92.71 -0.77 12.21 16 47 H 0.13 4.73 6.33 -2.39 -0.02 4.72 16 48 H 0.14 3.45 6.67 -2.39 -0.02 3.43 16 49 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.09 1.86 6.34 -2.39 -0.02 1.85 16 51 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.11 1.20 6.15 -2.39 -0.01 1.18 16 Total: -1.00 -70.59 420.11 -0.83 -71.42 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.95 Total: 17.13 kcal Atomic # 6 Polarization: 31.93 SS G_CDS: 8.96 Total: 40.88 kcal Atomic # 7 Polarization: -127.77 SS G_CDS: -13.56 Total: -141.33 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: 0.79 Total: -29.84 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -70.59 -0.83 -71.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069370373.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.800 kcal (2) G-P(sol) polarization free energy of solvation -70.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds