Wall clock time and date at job start Tue Mar 31 2020 06:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29946 * 126.28738 * 2 1 4 4 O 1.21302 * 110.25120 * 179.97438 * 3 2 1 5 5 C 1.33643 * 109.81254 * 0.02562 * 4 3 2 6 6 C 1.50706 * 126.55398 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.46953 * 195.02426 * 6 5 4 8 8 C 1.52996 * 109.46904 * 75.02632 * 6 5 4 9 9 N 1.46901 * 109.46898 * 315.02210 * 6 5 4 10 10 C 1.46950 * 110.99804 * 179.97438 * 9 6 5 11 11 C 1.53053 * 109.36589 * 183.19091 * 10 9 6 12 12 N 1.46951 * 109.36240 * 301.60134 * 11 10 9 13 13 C 1.46901 * 111.00160 * 183.18681 * 12 11 10 14 14 C 1.52993 * 109.47476 * 170.00059 * 13 12 11 15 15 C 1.50700 * 109.47277 * 180.02562 * 14 13 12 16 16 O 1.21287 * 120.00075 * 359.97438 * 15 14 13 17 17 N 1.34783 * 120.00195 * 179.72358 * 15 14 13 18 18 C 1.37100 * 120.00185 * 180.27153 * 17 15 14 19 19 H 1.08001 * 119.99500 * 17.72019 * 18 17 15 20 20 C 1.38943 * 119.99647 * 197.72103 * 18 17 15 21 21 N 1.31408 * 120.00658 * 21.38805 * 20 18 17 22 22 Si 1.86807 * 119.99682 * 201.39062 * 20 18 17 23 23 H 1.48496 * 109.47238 * 89.99773 * 22 20 18 24 24 H 1.48499 * 109.46998 * 210.00254 * 22 20 18 25 25 H 1.48501 * 109.46883 * 329.99624 * 22 20 18 26 26 C 1.46502 * 119.99501 * 0.27093 * 17 15 14 27 27 C 1.47205 * 109.47195 * 84.23457 * 26 17 15 28 28 N 9.22447 * 113.92768 * 277.75702 * 2 1 3 29 29 C 1.46964 * 110.88374 * 59.31840 * 12 11 10 30 30 C 1.46951 * 111.00160 * 303.80064 * 9 6 5 31 31 N 1.31131 * 106.89448 * 0.22510 * 5 4 3 32 32 H 1.09003 * 109.46361 * 89.97786 * 1 2 3 33 33 H 1.08996 * 109.47031 * 209.97457 * 1 2 3 34 34 H 1.08992 * 109.46874 * 329.97944 * 1 2 3 35 35 H 1.09000 * 109.46892 * 180.02562 * 8 6 5 36 36 H 1.09003 * 109.46977 * 299.99916 * 8 6 5 37 37 H 1.09000 * 109.47725 * 59.99806 * 8 6 5 38 38 H 1.08995 * 109.48851 * 63.22317 * 10 9 6 39 39 H 1.08999 * 109.49056 * 303.15711 * 10 9 6 40 40 H 1.08999 * 109.48846 * 181.63194 * 11 10 9 41 41 H 1.09005 * 109.48544 * 61.56336 * 11 10 9 42 42 H 1.09001 * 109.47334 * 49.99538 * 13 12 11 43 43 H 1.09001 * 109.47069 * 290.00314 * 13 12 11 44 44 H 1.09001 * 109.47702 * 59.99743 * 14 13 12 45 45 H 1.09010 * 109.47058 * 299.99966 * 14 13 12 46 46 H 0.96999 * 120.00569 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.46693 * 204.22592 * 26 17 15 48 48 H 1.08998 * 109.47521 * 324.23176 * 26 17 15 49 49 H 1.09001 * 109.48344 * 60.64654 * 29 12 11 50 50 H 1.08993 * 109.48919 * 180.70949 * 29 12 11 51 51 H 1.08997 * 109.48951 * 296.77619 * 30 9 6 52 52 H 1.09004 * 109.49195 * 56.82315 * 30 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6212 0.0003 6 6 4.7970 -1.4371 0.0003 7 1 4.5652 -2.4682 -0.2663 8 6 5.4275 -1.4000 1.3938 9 7 5.7391 -0.8783 -0.9786 10 6 6.9895 -1.6499 -1.0059 11 6 7.9716 -0.9906 -1.9772 12 7 7.3657 -0.9273 -3.3145 13 6 8.3078 -0.3685 -4.2934 14 6 7.7431 -0.5467 -5.7041 15 6 8.7099 0.0260 -6.7083 16 8 9.7482 0.5278 -6.3326 17 7 8.4231 -0.0238 -8.0243 18 6 9.3052 0.4922 -8.9382 19 1 10.3314 0.6739 -8.6550 20 6 8.8788 0.7812 -10.2286 21 7 7.6011 0.9691 -10.4720 22 14 10.1218 0.9028 -11.6178 23 1 10.2988 -0.4330 -12.2419 24 1 9.6320 1.8647 -12.6375 25 1 11.4228 1.3734 -11.0780 26 6 7.1687 -0.6295 -8.4780 27 6 6.0885 0.3681 -8.4080 28 7 5.2483 1.1380 -8.3545 29 6 6.1153 -0.1557 -3.2872 30 6 5.1331 -0.8145 -2.3158 31 7 2.3031 -1.0841 -0.0053 32 1 -0.3632 0.0004 -1.0277 33 1 -0.3633 -0.8902 0.5134 34 1 -0.3633 0.8897 0.5141 35 1 6.3442 -1.9897 1.3936 36 1 5.6593 -0.3688 1.6603 37 1 4.7285 -1.8146 2.1201 38 1 6.7813 -2.6681 -1.3345 39 1 7.4253 -1.6716 -0.0071 40 1 8.8890 -1.5775 -2.0210 41 1 8.2007 0.0182 -1.6337 42 1 9.2630 -0.8880 -4.2161 43 1 8.4542 0.6927 -4.0920 44 1 6.7880 -0.0271 -5.7815 45 1 7.5968 -1.6079 -5.9055 46 1 7.3035 1.1712 -11.3727 47 1 7.2815 -0.9711 -9.5070 48 1 6.9223 -1.4772 -7.8387 49 1 6.3235 0.8626 -2.9586 50 1 5.6796 -0.1338 -4.2860 51 1 4.9036 -1.8230 -2.6595 52 1 4.2156 -0.2276 -2.2717 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069370378.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:11 Heat of formation + Delta-G solvation = 69.671125 kcal Electronic energy + Delta-G solvation = -34754.432760 eV Core-core repulsion = 30178.565655 eV Total energy + Delta-G solvation = -4575.867106 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 376.201 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -46.68552 -40.90808 -40.34766 -37.88179 -37.43575 -37.05906 -36.11544 -34.42333 -33.76966 -32.62082 -32.17214 -30.76057 -30.04118 -29.14200 -27.67988 -26.51222 -25.53554 -24.47289 -24.21291 -23.25175 -21.71078 -20.74796 -20.58111 -19.73158 -19.28244 -18.50666 -18.31059 -18.00360 -17.22205 -16.96422 -16.53507 -16.50199 -16.04360 -15.84100 -15.53321 -15.52145 -15.39801 -15.01015 -14.68350 -14.64755 -14.50658 -14.18712 -14.16055 -13.90952 -13.69556 -13.61949 -13.46269 -13.29454 -13.24135 -13.07812 -12.91692 -12.89380 -12.70003 -12.56183 -12.39668 -12.30075 -12.25459 -12.22640 -12.12421 -12.11144 -11.95586 -11.78319 -11.56074 -11.10791 -10.96310 -10.41311 -9.91886 -9.57220 -9.33126 -8.40003 -5.95629 0.04418 1.10136 1.40267 1.48446 1.58398 1.75137 1.81241 2.05107 2.22794 2.30651 2.34927 2.73554 2.83624 3.00504 3.08063 3.27489 3.59519 3.69617 3.77465 3.89981 3.94190 4.03432 4.11016 4.14655 4.25783 4.31485 4.34040 4.43516 4.49212 4.51480 4.53277 4.53543 4.61098 4.69307 4.73175 4.76537 4.84356 4.87813 4.89209 4.91920 4.97478 4.99476 5.04018 5.06318 5.14034 5.26404 5.49374 5.73709 5.81908 6.02179 6.04455 6.11972 6.40709 6.99634 7.09157 7.13253 7.36948 7.93753 8.63705 Molecular weight = 376.20amu Principal moments of inertia in cm(-1) A = 0.014118 B = 0.001919 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.776761 B =14589.621740 C =16133.473653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.161 3.839 3 N -0.415 5.415 4 O 0.075 5.925 5 C 0.199 3.801 6 C 0.177 3.823 7 H 0.104 0.896 8 C -0.143 4.143 9 N -0.543 5.543 10 C 0.064 3.936 11 C 0.052 3.948 12 N -0.532 5.532 13 C 0.088 3.912 14 C -0.118 4.118 15 C 0.451 3.549 16 O -0.618 6.618 17 N -0.457 5.457 18 C -0.339 4.339 19 H 0.082 0.918 20 C 0.003 3.997 21 N -0.894 5.894 22 Si 0.987 3.013 23 H -0.258 1.258 24 H -0.289 1.289 25 H -0.278 1.278 26 C 0.223 3.777 27 C 0.257 3.743 28 N -0.511 5.511 29 C 0.056 3.944 30 C 0.069 3.931 31 N -0.498 5.498 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.033 0.967 42 H 0.083 0.917 43 H 0.014 0.986 44 H 0.077 0.923 45 H 0.123 0.877 46 H 0.274 0.726 47 H 0.124 0.876 48 H 0.140 0.860 49 H 0.026 0.974 50 H 0.076 0.924 51 H 0.057 0.943 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.540 -13.050 22.270 27.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 N -0.127 5.127 4 O 0.020 5.980 5 C -0.022 4.022 6 C 0.067 3.933 7 H 0.121 0.879 8 C -0.201 4.201 9 N -0.270 5.270 10 C -0.063 4.063 11 C -0.075 4.075 12 N -0.257 5.257 13 C -0.040 4.040 14 C -0.158 4.158 15 C 0.241 3.759 16 O -0.504 6.504 17 N -0.177 5.177 18 C -0.466 4.466 19 H 0.100 0.900 20 C -0.199 4.199 21 N -0.533 5.533 22 Si 0.811 3.189 23 H -0.183 1.183 24 H -0.215 1.215 25 H -0.203 1.203 26 C 0.097 3.903 27 C -0.060 4.060 28 N -0.192 5.192 29 C -0.072 4.072 30 C -0.059 4.059 31 N -0.233 5.233 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.135 0.865 40 H 0.118 0.882 41 H 0.051 0.949 42 H 0.102 0.898 43 H 0.032 0.968 44 H 0.095 0.905 45 H 0.141 0.859 46 H 0.084 0.916 47 H 0.142 0.858 48 H 0.157 0.843 49 H 0.044 0.956 50 H 0.094 0.906 51 H 0.075 0.925 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.008 -11.120 22.357 26.901 hybrid contribution 0.820 0.817 -1.391 1.810 sum -9.188 -10.304 20.966 25.103 Atomic orbital electron populations 1.20349 0.80422 1.05906 1.05400 1.26649 1.02139 0.83041 0.99292 1.74685 0.89953 1.25099 1.22915 1.85325 1.21904 1.25329 1.65463 1.29144 0.97048 0.81992 0.94014 1.20333 0.82726 0.93568 0.96654 0.87884 1.21975 1.02511 1.04349 0.91290 1.62192 1.05297 1.53763 1.05794 1.22340 0.87758 0.95270 1.00904 1.22293 0.97967 1.00286 0.86994 1.62220 1.04526 1.51614 1.07299 1.21553 0.95440 0.97076 0.89966 1.21501 0.97298 1.03879 0.93135 1.21021 0.88695 0.82930 0.83230 1.90510 1.29633 1.50709 1.79517 1.43839 1.16866 1.52028 1.04927 1.19615 0.92867 1.42973 0.91187 0.89969 1.25893 0.98201 0.95224 1.00537 1.69939 1.15478 1.45205 1.22632 0.85022 0.77960 0.78609 0.77285 1.18265 1.21458 1.20286 1.19080 0.77020 0.89310 1.04929 1.30045 0.92643 0.93869 0.89436 1.81110 1.14742 1.10304 1.13056 1.22118 0.91013 0.94901 0.99179 1.21995 0.95697 1.00131 0.88064 1.71912 0.99901 1.29867 1.21660 0.88302 0.87454 0.88446 0.87663 0.91458 0.90488 0.92097 0.86530 0.88194 0.94888 0.89817 0.96774 0.90516 0.85856 0.91639 0.85843 0.84281 0.95598 0.90607 0.92470 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.51 71.24 0.75 -0.03 16 2 C 0.16 3.44 8.22 138.46 1.14 4.58 16 3 N -0.42 -10.57 12.16 -60.31 -0.73 -11.30 16 4 O 0.07 1.84 11.12 74.83 0.83 2.67 16 5 C 0.20 3.97 5.65 88.38 0.50 4.47 16 6 C 0.18 2.41 2.62 44.17 0.12 2.52 16 7 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 8 C -0.14 -1.21 8.95 71.98 0.64 -0.57 16 9 N -0.54 -8.93 4.57 -874.91 -4.00 -12.93 16 10 C 0.06 0.80 5.32 86.31 0.46 1.26 16 11 C 0.05 0.95 5.61 86.31 0.48 1.43 16 12 N -0.53 -12.36 4.71 -895.73 -4.22 -16.58 16 13 C 0.09 2.61 4.25 86.30 0.37 2.98 16 14 C -0.12 -3.75 4.24 29.85 0.13 -3.62 16 15 C 0.45 19.79 7.57 87.66 0.66 20.45 16 16 O -0.62 -32.15 15.63 -3.05 -0.05 -32.20 16 17 N -0.46 -20.79 2.60 -645.41 -1.68 -22.47 16 18 C -0.34 -17.47 9.32 84.04 0.78 -16.69 16 19 H 0.08 4.59 7.39 -2.91 -0.02 4.57 16 20 C 0.00 0.17 4.87 84.93 0.41 0.58 16 21 N -0.89 -44.60 9.48 21.66 0.21 -44.40 16 22 Si 0.99 39.97 29.60 68.60 2.03 42.00 16 23 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 24 H -0.29 -11.77 7.11 99.48 0.71 -11.07 16 25 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 26 C 0.22 8.33 4.91 84.57 0.42 8.75 16 27 C 0.26 11.06 12.98 89.39 1.16 12.22 16 28 N -0.51 -24.09 18.57 20.07 0.37 -23.72 16 29 C 0.06 1.39 5.41 86.31 0.47 1.86 16 30 C 0.07 1.42 5.34 86.31 0.46 1.88 16 31 N -0.50 -10.70 11.55 -303.18 -3.50 -14.21 16 32 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 0.41 6.33 -2.39 -0.02 0.39 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.12 0.84 6.14 -2.39 -0.01 0.82 16 40 H 0.10 1.53 8.07 -2.39 -0.02 1.51 16 41 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.08 2.49 7.98 -2.39 -0.02 2.47 16 43 H 0.01 0.49 8.08 -2.39 -0.02 0.47 16 44 H 0.08 2.49 5.88 -2.39 -0.01 2.47 16 45 H 0.12 3.11 7.41 -2.38 -0.02 3.09 16 46 H 0.27 13.22 8.31 -92.71 -0.77 12.45 16 47 H 0.12 4.76 6.46 -2.39 -0.02 4.75 16 48 H 0.14 3.63 6.67 -2.39 -0.02 3.61 16 49 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.08 1.99 6.34 -2.39 -0.02 1.98 16 51 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 52 H 0.05 1.25 6.72 -2.38 -0.02 1.24 16 Total: -1.00 -72.80 420.27 -0.84 -73.64 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.95 Total: 17.42 kcal Atomic # 6 Polarization: 33.12 SS G_CDS: 8.94 Total: 42.06 kcal Atomic # 7 Polarization: -132.05 SS G_CDS: -13.55 Total: -145.60 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: 0.78 Total: -29.52 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -72.80 -0.84 -73.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069370378.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.311 kcal (2) G-P(sol) polarization free energy of solvation -72.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds