Wall clock time and date at job start Tue Mar 31 2020 05:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.49280 * 2 1 4 4 C 1.53037 * 109.50251 * 239.92900 * 2 1 3 5 5 C 1.53032 * 109.53957 * 178.68528 * 4 2 1 6 6 C 1.53192 * 109.31325 * 61.36588 * 5 4 2 7 7 N 1.46922 * 108.77580 * 305.36398 * 6 5 4 8 8 S 1.65602 * 120.63287 * 233.61247 * 7 6 5 9 9 O 1.42102 * 106.39949 * 29.05106 * 8 7 6 10 10 O 1.42092 * 106.40550 * 161.97422 * 8 7 6 11 11 N 1.65600 * 107.21443 * 275.51672 * 8 7 6 12 12 C 1.46504 * 120.00342 * 89.23722 * 11 8 7 13 13 C 1.50704 * 109.46929 * 94.99723 * 12 11 8 14 14 H 1.08001 * 120.00019 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99427 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00482 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99588 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47167 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47329 * 119.99770 * 17 15 13 20 20 H 1.48494 * 109.47153 * 239.99563 * 17 15 13 21 21 C 1.46503 * 119.99994 * 269.23095 * 11 8 7 22 22 C 1.53002 * 109.46666 * 95.28175 * 21 11 8 23 23 N 1.46899 * 109.47172 * 185.25214 * 22 21 11 24 24 C 1.47016 * 111.00117 * 293.63985 * 23 22 21 25 25 C 1.53097 * 109.26018 * 177.60537 * 24 23 22 26 26 O 1.43018 * 109.25883 * 56.84693 * 25 24 23 27 27 C 1.43023 * 113.73700 * 301.33015 * 26 25 24 28 28 C 1.47014 * 111.00417 * 170.00090 * 23 22 21 29 29 C 1.46937 * 118.76441 * 53.58692 * 7 6 5 30 30 H 1.09006 * 109.47093 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47191 * 60.00656 * 1 2 3 32 32 H 1.08993 * 109.47539 * 300.00185 * 1 2 3 33 33 H 1.08999 * 109.45858 * 298.70817 * 4 2 1 34 34 H 1.09006 * 109.45743 * 58.67507 * 4 2 1 35 35 H 1.09007 * 109.49682 * 181.32107 * 5 4 2 36 36 H 1.08999 * 109.49838 * 301.38022 * 5 4 2 37 37 H 1.08992 * 109.58711 * 65.15556 * 6 5 4 38 38 H 1.08999 * 109.58503 * 185.57730 * 6 5 4 39 39 H 1.08995 * 109.47215 * 214.99672 * 12 11 8 40 40 H 1.09003 * 109.46798 * 335.00068 * 12 11 8 41 41 H 0.97000 * 119.99669 * 180.02562 * 16 15 13 42 42 H 1.08995 * 109.47301 * 215.28140 * 21 11 8 43 43 H 1.09001 * 109.47314 * 335.28737 * 21 11 8 44 44 H 1.09001 * 109.47581 * 305.25218 * 22 21 11 45 45 H 1.08993 * 109.47066 * 65.25356 * 22 21 11 46 46 H 1.09009 * 109.50236 * 297.53810 * 24 23 22 47 47 H 1.08997 * 109.50675 * 57.66582 * 24 23 22 48 48 H 1.09000 * 109.50875 * 296.91190 * 25 24 23 49 49 H 1.08997 * 109.50922 * 176.77739 * 25 24 23 50 50 H 1.09001 * 109.50375 * 298.73564 * 27 26 25 51 51 H 1.08995 * 109.53945 * 178.62398 * 27 26 25 52 52 H 1.09007 * 109.50335 * 302.33039 * 28 23 22 53 53 H 1.08994 * 109.50425 * 62.45828 * 28 23 22 54 54 H 1.09001 * 109.61361 * 186.63979 * 29 7 6 55 55 H 1.09003 * 109.55580 * 66.21579 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0409 -0.7228 -1.2484 5 6 3.5709 -0.6948 -1.2660 6 6 4.1053 -1.4267 -0.0308 7 7 3.5045 -0.8293 1.1696 8 16 4.4586 -0.2850 2.4089 9 8 5.6900 0.1133 1.8221 10 8 3.6492 0.5878 3.1849 11 7 4.7997 -1.5874 3.3732 12 6 5.9774 -2.4142 3.0979 13 6 7.1318 -1.9414 3.9435 14 1 7.0014 -1.1081 4.6180 15 6 8.3547 -2.5721 3.8550 16 7 8.5136 -3.5865 3.0332 17 14 9.7859 -1.9857 4.9025 18 1 9.3507 -0.8367 5.7366 19 1 10.2415 -3.0919 5.7821 20 1 10.9033 -1.5618 4.0212 21 6 3.9239 -1.9127 4.5016 22 6 2.9062 -2.9700 4.0690 23 7 1.9503 -3.2047 5.1594 24 6 2.6134 -3.8205 6.3180 25 6 1.5966 -3.9921 7.4496 26 8 0.4942 -4.7723 6.9789 27 6 -0.1752 -4.2014 5.8513 28 6 0.8237 -4.0320 4.7036 29 6 2.0412 -0.7233 1.2499 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 0.5138 0.8899 33 1 1.6968 -1.7570 -1.2356 34 1 1.6585 -0.2239 -2.1389 35 1 3.9335 -1.1892 -2.1672 36 1 3.9159 0.3391 -1.2544 37 1 3.8376 -2.4817 -0.0870 38 1 5.1895 -1.3246 0.0137 39 1 5.7548 -3.4543 3.3359 40 1 6.2413 -2.3311 2.0436 41 1 9.3739 -4.0303 2.9713 42 1 4.5223 -2.3003 5.3261 43 1 3.3988 -1.0139 4.8249 44 1 2.3714 -2.6199 3.1861 45 1 3.4252 -3.8993 3.8345 46 1 3.0105 -4.7953 6.0345 47 1 3.4278 -3.1790 6.6546 48 1 1.2394 -3.0132 7.7696 49 1 2.0695 -4.5002 8.2900 50 1 -0.5839 -3.2286 6.1248 51 1 -0.9840 -4.8603 5.5356 52 1 0.3316 -3.5448 3.8617 53 1 1.1921 -5.0100 4.3943 54 1 1.7637 -0.1571 2.1390 55 1 1.6052 -1.7211 1.2987 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069414917.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:50 Heat of formation + Delta-G solvation = -145.487988 kcal Electronic energy + Delta-G solvation = -35638.647199 eV Core-core repulsion = 31222.027205 eV Total energy + Delta-G solvation = -4416.619994 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.202 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.54296 -39.65259 -38.42669 -38.04289 -36.89838 -36.31497 -34.55868 -34.37713 -32.72932 -32.14932 -30.99456 -28.81093 -27.64685 -26.81697 -25.47133 -24.98431 -24.59961 -23.11592 -22.80898 -21.31118 -21.07489 -19.77578 -19.04230 -18.41774 -18.30629 -17.67278 -17.25302 -17.04603 -16.61516 -16.26190 -15.99037 -15.91602 -15.75692 -15.57113 -15.34164 -15.15487 -15.05675 -14.78737 -14.59044 -14.45976 -14.17329 -13.86034 -13.61265 -13.51019 -13.31933 -13.23858 -13.12418 -13.00803 -12.97893 -12.85210 -12.80235 -12.58267 -12.43149 -12.42235 -12.28540 -12.16091 -11.97713 -11.81523 -11.74416 -11.65214 -11.44493 -11.41445 -11.22677 -10.68449 -10.62165 -10.01417 -9.83763 -9.41774 -8.22997 -6.34160 -0.40848 1.35672 1.38645 1.49835 1.92912 2.37056 2.48815 2.78340 3.00388 3.08473 3.33383 3.66642 3.76142 3.90667 3.93327 3.96698 4.03022 4.09001 4.13501 4.20794 4.23405 4.28917 4.39772 4.42371 4.45985 4.52801 4.56874 4.61179 4.67045 4.75032 4.79525 4.82154 4.84791 4.86706 4.89458 4.95883 4.99324 5.00446 5.04665 5.07514 5.15948 5.17326 5.26823 5.30306 5.42047 5.46360 5.53408 5.60406 5.70235 5.84551 5.96114 5.98118 6.08352 6.20720 6.73536 7.34716 8.84645 Molecular weight = 375.20amu Principal moments of inertia in cm(-1) A = 0.005552 B = 0.004982 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5042.421487 B = 5618.416698 C = 9659.915572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 H 0.058 0.942 4 C -0.105 4.105 5 C -0.130 4.130 6 C 0.114 3.886 7 N -1.002 6.002 8 S 2.787 3.213 9 O -1.008 7.008 10 O -1.005 7.005 11 N -0.994 5.994 12 C 0.278 3.722 13 C -0.547 4.547 14 H 0.049 0.951 15 C 0.016 3.984 16 N -0.921 5.921 17 Si 0.952 3.048 18 H -0.271 1.271 19 H -0.269 1.269 20 H -0.279 1.279 21 C 0.126 3.874 22 C 0.050 3.950 23 N -0.536 5.536 24 C 0.010 3.990 25 C 0.069 3.931 26 O -0.405 6.405 27 C 0.064 3.936 28 C 0.017 3.983 29 C 0.117 3.883 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.025 0.975 40 H 0.017 0.983 41 H 0.267 0.733 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.030 0.970 46 H 0.032 0.968 47 H 0.086 0.914 48 H 0.066 0.934 49 H 0.111 0.889 50 H 0.065 0.935 51 H 0.118 0.882 52 H 0.104 0.896 53 H 0.034 0.966 54 H 0.082 0.918 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.008 -0.588 -3.663 21.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.126 4.126 3 H 0.076 0.924 4 C -0.142 4.142 5 C -0.169 4.169 6 C -0.011 4.011 7 N -0.844 5.844 8 S 2.797 3.203 9 O -0.992 6.992 10 O -0.989 6.989 11 N -0.834 5.834 12 C 0.155 3.845 13 C -0.586 4.586 14 H 0.067 0.933 15 C -0.183 4.183 16 N -0.561 5.561 17 Si 0.777 3.223 18 H -0.196 1.196 19 H -0.194 1.194 20 H -0.205 1.205 21 C 0.000 4.000 22 C -0.079 4.079 23 N -0.262 5.262 24 C -0.118 4.118 25 C -0.008 4.008 26 O -0.324 6.324 27 C -0.013 4.013 28 C -0.111 4.111 29 C -0.007 4.007 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.035 0.965 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.048 0.952 46 H 0.050 0.950 47 H 0.105 0.895 48 H 0.084 0.916 49 H 0.129 0.871 50 H 0.084 0.916 51 H 0.136 0.864 52 H 0.122 0.878 53 H 0.053 0.947 54 H 0.101 0.899 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.797 0.454 -3.330 21.067 hybrid contribution 1.949 -0.640 0.050 2.052 sum -18.849 -0.186 -3.280 19.133 Atomic orbital electron populations 1.21738 0.92469 1.02980 1.02528 1.21499 0.97282 0.99160 0.94706 0.92370 1.21528 0.93719 1.01567 0.97392 1.21887 0.97403 1.00521 0.97070 1.21548 0.97120 0.98082 0.84311 1.58063 1.17000 1.77930 1.31375 1.01541 0.72187 0.73599 0.72951 1.93553 1.45706 1.81564 1.78373 1.93480 1.70738 1.64038 1.70626 1.57651 1.35153 1.48760 1.41797 1.18548 0.80764 0.90092 0.95118 1.21818 0.96719 1.16070 1.24028 0.93271 1.25670 1.00987 0.94983 0.96699 1.70001 1.25546 1.22654 1.37929 0.85595 0.79227 0.78580 0.78867 1.19564 1.19450 1.20484 1.21181 0.90870 0.99243 0.88704 1.22427 0.93243 0.98022 0.94229 1.62193 1.09894 1.47348 1.06746 1.22908 0.98140 0.98078 0.92687 1.22715 0.86223 0.96639 0.95252 1.87947 1.46134 1.49796 1.48499 1.22815 0.94000 0.99933 0.84530 1.22891 0.92732 0.95868 0.99640 1.21755 0.77305 1.01957 0.99729 0.91205 0.91318 0.92458 0.90407 0.90149 0.88885 0.92915 0.89809 0.91911 0.95733 0.96513 0.92383 0.90965 0.89409 0.89608 0.95205 0.94952 0.89529 0.91586 0.87133 0.91646 0.86376 0.87814 0.94725 0.89938 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.20 71.98 0.66 -1.18 16 2 C -0.11 -2.00 2.87 -10.72 -0.03 -2.03 16 3 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 4 C -0.10 -1.72 5.17 30.62 0.16 -1.56 16 5 C -0.13 -2.78 6.08 30.67 0.19 -2.59 16 6 C 0.11 3.19 6.46 86.36 0.56 3.74 16 7 N -1.00 -30.41 3.35 -513.06 -1.72 -32.12 16 8 S 2.79 114.30 6.08 -56.49 -0.34 113.96 16 9 O -1.01 -50.50 15.89 -128.00 -2.03 -52.53 16 10 O -1.00 -42.33 15.13 -128.00 -1.94 -44.26 16 11 N -0.99 -41.59 2.83 -519.83 -1.47 -43.06 16 12 C 0.28 14.04 5.10 85.63 0.44 14.47 16 13 C -0.55 -31.07 9.38 25.60 0.24 -30.83 16 14 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 15 C 0.02 0.92 5.46 84.65 0.46 1.39 16 16 N -0.92 -53.65 13.29 21.45 0.28 -53.36 16 17 Si 0.95 44.82 29.54 68.60 2.03 46.85 16 18 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 21 C 0.13 4.49 5.48 86.38 0.47 4.96 16 22 C 0.05 1.45 5.28 86.30 0.46 1.91 16 23 N -0.54 -13.32 4.73 -895.21 -4.23 -17.55 16 24 C 0.01 0.25 5.44 86.31 0.47 0.72 16 25 C 0.07 1.42 7.01 72.01 0.50 1.93 16 26 O -0.40 -9.08 10.83 -148.98 -1.61 -10.69 16 27 C 0.06 1.11 7.01 72.01 0.50 1.61 16 28 C 0.02 0.33 5.64 86.31 0.49 0.81 16 29 C 0.12 2.70 5.20 86.36 0.45 3.15 16 30 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.06 2.15 7.06 -2.39 -0.02 2.13 16 39 H 0.02 1.27 8.11 -2.39 -0.02 1.25 16 40 H 0.02 0.91 7.63 -2.39 -0.02 0.89 16 41 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 42 H 0.07 2.70 6.74 -2.39 -0.02 2.68 16 43 H 0.09 3.08 6.90 -2.39 -0.02 3.07 16 44 H 0.09 2.19 6.91 -2.39 -0.02 2.18 16 45 H 0.03 0.95 8.12 -2.39 -0.02 0.93 16 46 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 47 H 0.09 2.25 6.50 -2.39 -0.02 2.23 16 48 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 52 H 0.10 1.62 8.09 -2.38 -0.02 1.60 16 53 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 54 H 0.08 2.08 6.80 -2.39 -0.02 2.07 16 55 H 0.09 1.59 7.64 -2.39 -0.02 1.57 16 Total: -1.00 -72.56 432.47 -4.17 -76.74 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.84 Total: 19.53 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 6.02 Total: -3.49 kcal Atomic # 7 Polarization: -138.96 SS G_CDS: -7.13 Total: -146.10 kcal Atomic # 8 Polarization: -101.91 SS G_CDS: -5.58 Total: -107.49 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: 114.30 SS G_CDS: -0.34 Total: 113.96 kcal Total: -72.56 -4.17 -76.74 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069414917.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.750 kcal (2) G-P(sol) polarization free energy of solvation -72.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds