Wall clock time and date at job start Tue Mar 31 2020 06:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34698 * 117.00105 * 2 1 4 4 O 1.21443 * 119.99453 * 359.97438 * 3 2 1 5 5 C 1.47926 * 120.00160 * 179.97438 * 3 2 1 6 6 C 1.39594 * 120.00469 * 179.97438 * 5 3 2 7 7 C 1.37814 * 119.99589 * 180.02562 * 6 5 3 8 8 C 1.39556 * 120.00132 * 359.97438 * 7 6 5 9 9 C 1.48050 * 119.99134 * 180.02562 * 8 7 6 10 10 O 1.21530 * 119.99668 * 228.85620 * 9 8 7 11 11 N 1.34769 * 120.00394 * 48.85184 * 9 8 7 12 12 C 1.46507 * 119.99802 * 5.33983 * 11 9 8 13 13 C 1.50688 * 109.47327 * 263.43419 * 12 11 9 14 14 H 1.08001 * 120.00273 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00163 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99872 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00262 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47218 * 59.99824 * 17 15 13 19 19 H 1.48500 * 109.47154 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47107 * 299.99646 * 17 15 13 21 21 C 1.46498 * 120.00482 * 185.34498 * 11 9 8 22 22 C 1.53005 * 109.46731 * 269.99984 * 21 11 9 23 23 N 1.46901 * 109.47136 * 179.97438 * 22 21 11 24 24 C 1.47017 * 111.00152 * 293.63867 * 23 22 21 25 25 C 1.53097 * 109.25608 * 177.60579 * 24 23 22 26 26 O 1.43010 * 109.26033 * 56.84959 * 25 24 23 27 27 C 1.43017 * 113.73594 * 301.32517 * 26 25 24 28 28 C 1.47012 * 111.00009 * 170.00025 * 23 22 21 29 29 C 1.39554 * 120.01347 * 0.27225 * 8 7 6 30 30 C 1.37811 * 120.00283 * 359.45259 * 29 8 7 31 31 H 1.09003 * 109.47140 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47651 * 300.00253 * 1 2 3 33 33 H 1.09008 * 109.46900 * 60.00082 * 1 2 3 34 34 H 1.08005 * 120.00193 * 0.02562 * 6 5 3 35 35 H 1.07998 * 120.00067 * 179.97438 * 7 6 5 36 36 H 1.08999 * 109.46665 * 23.43782 * 12 11 9 37 37 H 1.09001 * 109.46790 * 143.43015 * 12 11 9 38 38 H 0.96997 * 119.99916 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.47117 * 29.99035 * 21 11 9 40 40 H 1.08997 * 109.47646 * 149.99923 * 21 11 9 41 41 H 1.08998 * 109.47357 * 299.99838 * 22 21 11 42 42 H 1.09003 * 109.47186 * 60.00035 * 22 21 11 43 43 H 1.09003 * 109.50332 * 297.54012 * 24 23 22 44 44 H 1.08996 * 109.50505 * 57.66611 * 24 23 22 45 45 H 1.08996 * 109.51003 * 296.90817 * 25 24 23 46 46 H 1.09003 * 109.53762 * 176.79872 * 25 24 23 47 47 H 1.08995 * 109.50941 * 298.73781 * 27 26 25 48 48 H 1.09003 * 109.53980 * 178.62304 * 27 26 25 49 49 H 1.09000 * 109.50708 * 302.32541 * 28 23 22 50 50 H 1.08996 * 109.50680 * 62.42068 * 28 23 22 51 51 H 1.07997 * 120.00038 * 179.72124 * 29 8 7 52 52 H 1.08005 * 120.00465 * 180.24490 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2186 -0.0005 5 6 3.5407 1.2776 0.0006 6 6 4.1746 2.5213 0.0000 7 6 5.5508 2.5933 0.0000 8 6 6.3108 1.4228 0.0011 9 6 7.7893 1.5003 0.0017 10 8 8.4326 0.8400 -0.7902 11 7 8.4217 2.3030 0.8803 12 6 7.6555 3.0087 1.9105 13 6 7.3590 4.4106 1.4441 14 1 7.7068 4.7430 0.4772 15 6 6.6446 5.2694 2.2523 16 7 6.2215 4.8649 3.4300 17 14 6.2764 7.0070 1.6739 18 1 5.4846 6.9535 0.4186 19 1 5.5000 7.7223 2.7182 20 1 7.5514 7.7263 1.4246 21 6 9.8751 2.4702 0.8051 22 6 10.5558 1.4108 1.6742 23 7 12.0134 1.5779 1.5985 24 6 12.5080 1.2819 0.2460 25 6 14.0186 1.5257 0.1963 26 8 14.6587 0.7256 1.1940 27 6 14.2012 0.9884 2.5234 28 6 12.6924 0.7391 2.5967 29 6 5.6774 0.1793 -0.0035 30 6 4.3012 0.1069 0.0022 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 3.5864 3.4272 -0.0004 35 1 6.0413 3.5555 -0.0008 36 1 6.7195 2.4807 2.0927 37 1 8.2361 3.0476 2.8322 38 1 5.7186 5.4690 3.9984 39 1 10.2010 2.3560 -0.2287 40 1 10.1458 3.4632 1.1639 41 1 10.2300 1.5248 2.7081 42 1 10.2852 0.4177 1.3154 43 1 12.2992 0.2402 0.0020 44 1 12.0105 1.9317 -0.4738 45 1 14.2238 2.5789 0.3875 46 1 14.3996 1.2534 -0.7880 47 1 14.4117 2.0261 2.7823 48 1 14.7137 0.3276 3.2226 49 1 12.3296 0.9929 3.5928 50 1 12.4860 -0.3111 2.3907 51 1 6.2657 -0.7264 -0.0073 52 1 3.8110 -0.8555 0.0026 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069420917.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:12 Heat of formation + Delta-G solvation = -123.810994 kcal Electronic energy + Delta-G solvation = -34858.025991 eV Core-core repulsion = 30209.183369 eV Total energy + Delta-G solvation = -4648.842622 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 376.188 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.50533 -39.85382 -39.40304 -37.83584 -36.36264 -36.12132 -34.99053 -32.75786 -31.66567 -31.23602 -30.71651 -29.67566 -27.85178 -27.42242 -26.18261 -24.35712 -24.05779 -23.08772 -22.33218 -22.09749 -20.86045 -20.36068 -18.94212 -17.88840 -17.14817 -16.82746 -16.62148 -16.55303 -16.32930 -16.14409 -15.72953 -15.15565 -15.03789 -14.92860 -14.69372 -14.54396 -14.38854 -14.21160 -13.78909 -13.50789 -13.42674 -13.26104 -12.99509 -12.81037 -12.47895 -12.37646 -12.27509 -12.16258 -12.04592 -11.97203 -11.54819 -11.44762 -11.29298 -11.11450 -10.85801 -10.84617 -10.75423 -10.70631 -10.50400 -10.41432 -10.20003 -9.93792 -9.71843 -9.38178 -8.77222 -8.68296 -8.54822 -8.38576 -7.90949 -6.29700 -4.37448 0.73620 1.69802 2.54563 2.68919 3.18417 3.23799 3.25208 3.27403 3.48381 3.77748 4.04260 4.13546 4.24817 4.75774 4.82039 4.96539 4.98331 4.99821 5.01334 5.06830 5.08212 5.09573 5.17582 5.22273 5.23955 5.39528 5.42609 5.49190 5.52780 5.59060 5.63988 5.73608 5.73873 5.79380 5.89719 5.91993 6.01350 6.15275 6.26017 6.33588 6.37121 6.44038 6.58462 6.71137 6.78324 6.94989 6.97800 7.06769 7.08405 7.16473 7.38455 7.61511 7.78469 7.90517 8.13468 8.61477 8.77476 9.28746 10.76404 Molecular weight = 376.19amu Principal moments of inertia in cm(-1) A = 0.008998 B = 0.002524 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.103073 B =11092.141327 C =13404.462318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.510 3.490 4 O -0.506 6.506 5 C -0.119 4.119 6 C -0.060 4.060 7 C -0.072 4.072 8 C -0.082 4.082 9 C 0.554 3.446 10 O -0.563 6.563 11 N -0.585 5.585 12 C 0.233 3.767 13 C -0.546 4.546 14 H 0.065 0.935 15 C 0.072 3.928 16 N -0.880 5.880 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.127 3.873 22 C 0.044 3.956 23 N -0.533 5.533 24 C 0.015 3.985 25 C 0.064 3.936 26 O -0.390 6.390 27 C 0.065 3.935 28 C 0.018 3.982 29 C -0.094 4.094 30 C -0.081 4.081 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.138 0.862 35 H 0.174 0.826 36 H 0.043 0.957 37 H 0.037 0.963 38 H 0.268 0.732 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.037 0.963 43 H 0.043 0.957 44 H 0.091 0.909 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.060 0.940 48 H 0.095 0.905 49 H 0.086 0.914 50 H 0.040 0.960 51 H 0.131 0.869 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.276 -9.266 -3.146 10.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.356 3.644 4 O -0.394 6.394 5 C -0.121 4.121 6 C -0.078 4.078 7 C -0.090 4.090 8 C -0.085 4.085 9 C 0.342 3.658 10 O -0.444 6.444 11 N -0.315 5.315 12 C 0.114 3.886 13 C -0.584 4.584 14 H 0.083 0.917 15 C -0.133 4.133 16 N -0.517 5.517 17 Si 0.718 3.282 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.200 1.200 21 C 0.003 3.997 22 C -0.085 4.085 23 N -0.258 5.258 24 C -0.113 4.113 25 C -0.013 4.013 26 O -0.308 6.308 27 C -0.012 4.012 28 C -0.110 4.110 29 C -0.112 4.112 30 C -0.099 4.099 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.156 0.844 35 H 0.191 0.809 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.109 0.891 45 H 0.078 0.922 46 H 0.114 0.886 47 H 0.078 0.922 48 H 0.113 0.887 49 H 0.105 0.895 50 H 0.059 0.941 51 H 0.149 0.851 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.525 -8.879 -3.276 9.796 hybrid contribution -1.098 0.453 -0.055 1.189 sum 1.427 -8.426 -3.331 9.172 Atomic orbital electron populations 1.23251 0.76338 1.03528 1.02600 1.86546 1.23288 1.32947 1.84537 1.21414 0.89330 0.81243 0.72456 1.90820 1.66786 1.36035 1.45795 1.19176 0.88344 0.95394 1.09160 1.21240 0.94772 0.96315 0.95483 1.22285 0.92892 1.00589 0.93256 1.20188 0.93746 0.94352 1.00196 1.18407 0.87134 0.79440 0.80843 1.90697 1.67508 1.45168 1.41053 1.48165 1.07009 1.44196 1.32081 1.19590 0.91659 0.91692 0.85689 1.21341 1.36246 0.97026 1.03759 0.91721 1.24918 0.95144 0.98599 0.94617 1.69900 1.35951 1.36526 1.09295 0.86648 0.78711 0.84058 0.78757 1.19747 1.21032 1.19959 1.21222 0.79564 0.99157 0.99742 1.22499 0.85821 0.98604 1.01539 1.62137 1.05200 1.54281 1.04199 1.22843 0.96255 1.00702 0.91526 1.22682 0.91130 0.95476 0.91980 1.87953 1.63680 1.63225 1.15954 1.22652 0.92884 1.01411 0.84267 1.22767 0.95319 0.95747 0.97179 1.21050 0.93986 0.96931 0.99264 1.21189 0.93387 0.97604 0.97741 0.88132 0.91843 0.91944 0.84423 0.80892 0.93860 0.94477 0.92210 0.91027 0.89054 0.90302 0.94459 0.93897 0.89087 0.92187 0.88605 0.92182 0.88678 0.89530 0.94139 0.85135 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.68 9.81 -40.49 -0.40 -5.08 16 3 C 0.51 8.10 7.90 34.70 0.27 8.37 16 4 O -0.51 -9.15 16.12 -19.22 -0.31 -9.46 16 5 C -0.12 -1.95 5.88 -104.91 -0.62 -2.56 16 6 C -0.06 -1.07 9.58 -39.23 -0.38 -1.44 16 7 C -0.07 -1.37 7.74 -39.25 -0.30 -1.68 16 8 C -0.08 -1.51 4.68 -104.89 -0.49 -2.01 16 9 C 0.55 11.00 7.20 -12.24 -0.09 10.91 16 10 O -0.56 -12.00 16.66 5.34 0.09 -11.91 16 11 N -0.59 -11.43 2.46 -176.10 -0.43 -11.86 16 12 C 0.23 5.11 4.66 -5.20 -0.02 5.09 16 13 C -0.55 -12.80 6.50 -34.45 -0.22 -13.02 16 14 H 0.06 1.52 7.69 -52.49 -0.40 1.12 16 15 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.88 -22.87 13.29 55.43 0.74 -22.13 16 17 Si 0.89 19.38 29.54 -169.99 -5.02 14.36 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 C 0.13 2.20 5.32 -4.04 -0.02 2.18 16 22 C 0.04 0.68 5.28 -3.82 -0.02 0.66 16 23 N -0.53 -7.30 4.73 -234.30 -1.11 -8.41 16 24 C 0.01 0.19 5.44 -3.71 -0.02 0.17 16 25 C 0.06 0.72 7.01 37.21 0.26 0.98 16 26 O -0.39 -4.86 10.83 -35.23 -0.38 -5.24 16 27 C 0.06 0.69 7.01 37.21 0.26 0.95 16 28 C 0.02 0.22 5.65 -3.71 -0.02 0.20 16 29 C -0.09 -1.49 9.70 -39.25 -0.38 -1.87 16 30 C -0.08 -1.18 9.60 -39.23 -0.38 -1.56 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 34 H 0.14 2.43 7.64 -52.48 -0.40 2.03 16 35 H 0.17 3.57 4.95 -52.49 -0.26 3.31 16 36 H 0.04 1.01 6.11 -51.93 -0.32 0.69 16 37 H 0.04 0.87 8.12 -51.93 -0.42 0.44 16 38 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 39 H 0.07 1.24 5.87 -51.93 -0.31 0.94 16 40 H 0.09 1.63 8.07 -51.93 -0.42 1.21 16 41 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 42 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 1.17 6.38 -51.93 -0.33 0.84 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 50 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 52 H 0.14 1.62 7.60 -52.48 -0.40 1.22 16 LS Contribution 426.21 15.07 6.42 6.42 Total: -1.00 -28.95 426.21 -9.48 -38.43 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.88 Total: 6.42 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -1.20 Total: 8.46 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: -0.80 Total: -42.41 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -1.00 Total: -31.68 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -28.95 -9.48 -38.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069420917.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.386 kcal (2) G-P(sol) polarization free energy of solvation -28.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds