Wall clock time and date at job start Tue Mar 31 2020 06:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34698 * 117.00105 * 2 1 4 4 O 1.21443 * 119.99453 * 359.97438 * 3 2 1 5 5 C 1.47926 * 120.00160 * 179.97438 * 3 2 1 6 6 C 1.39594 * 120.00469 * 179.97438 * 5 3 2 7 7 C 1.37814 * 119.99589 * 180.02562 * 6 5 3 8 8 C 1.39556 * 120.00132 * 359.97438 * 7 6 5 9 9 C 1.48050 * 119.99134 * 180.02562 * 8 7 6 10 10 O 1.21530 * 119.99668 * 228.85620 * 9 8 7 11 11 N 1.34769 * 120.00394 * 48.85184 * 9 8 7 12 12 C 1.46507 * 119.99802 * 5.33983 * 11 9 8 13 13 C 1.50688 * 109.47327 * 263.43419 * 12 11 9 14 14 H 1.08001 * 120.00273 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00163 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99872 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00262 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47218 * 59.99824 * 17 15 13 19 19 H 1.48500 * 109.47154 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47107 * 299.99646 * 17 15 13 21 21 C 1.46498 * 120.00482 * 185.34498 * 11 9 8 22 22 C 1.53005 * 109.46731 * 269.99984 * 21 11 9 23 23 N 1.46901 * 109.47136 * 179.97438 * 22 21 11 24 24 C 1.47017 * 111.00152 * 293.63867 * 23 22 21 25 25 C 1.53097 * 109.25608 * 177.60579 * 24 23 22 26 26 O 1.43010 * 109.26033 * 56.84959 * 25 24 23 27 27 C 1.43017 * 113.73594 * 301.32517 * 26 25 24 28 28 C 1.47012 * 111.00009 * 170.00025 * 23 22 21 29 29 C 1.39554 * 120.01347 * 0.27225 * 8 7 6 30 30 C 1.37811 * 120.00283 * 359.45259 * 29 8 7 31 31 H 1.09003 * 109.47140 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47651 * 300.00253 * 1 2 3 33 33 H 1.09008 * 109.46900 * 60.00082 * 1 2 3 34 34 H 1.08005 * 120.00193 * 0.02562 * 6 5 3 35 35 H 1.07998 * 120.00067 * 179.97438 * 7 6 5 36 36 H 1.08999 * 109.46665 * 23.43782 * 12 11 9 37 37 H 1.09001 * 109.46790 * 143.43015 * 12 11 9 38 38 H 0.96997 * 119.99916 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.47117 * 29.99035 * 21 11 9 40 40 H 1.08997 * 109.47646 * 149.99923 * 21 11 9 41 41 H 1.08998 * 109.47357 * 299.99838 * 22 21 11 42 42 H 1.09003 * 109.47186 * 60.00035 * 22 21 11 43 43 H 1.09003 * 109.50332 * 297.54012 * 24 23 22 44 44 H 1.08996 * 109.50505 * 57.66611 * 24 23 22 45 45 H 1.08996 * 109.51003 * 296.90817 * 25 24 23 46 46 H 1.09003 * 109.53762 * 176.79872 * 25 24 23 47 47 H 1.08995 * 109.50941 * 298.73781 * 27 26 25 48 48 H 1.09003 * 109.53980 * 178.62304 * 27 26 25 49 49 H 1.09000 * 109.50708 * 302.32541 * 28 23 22 50 50 H 1.08996 * 109.50680 * 62.42068 * 28 23 22 51 51 H 1.07997 * 120.00038 * 179.72124 * 29 8 7 52 52 H 1.08005 * 120.00465 * 180.24490 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2186 -0.0005 5 6 3.5407 1.2776 0.0006 6 6 4.1746 2.5213 0.0000 7 6 5.5508 2.5933 0.0000 8 6 6.3108 1.4228 0.0011 9 6 7.7893 1.5003 0.0017 10 8 8.4326 0.8400 -0.7902 11 7 8.4217 2.3030 0.8803 12 6 7.6555 3.0087 1.9105 13 6 7.3590 4.4106 1.4441 14 1 7.7068 4.7430 0.4772 15 6 6.6446 5.2694 2.2523 16 7 6.2215 4.8649 3.4300 17 14 6.2764 7.0070 1.6739 18 1 5.4846 6.9535 0.4186 19 1 5.5000 7.7223 2.7182 20 1 7.5514 7.7263 1.4246 21 6 9.8751 2.4702 0.8051 22 6 10.5558 1.4108 1.6742 23 7 12.0134 1.5779 1.5985 24 6 12.5080 1.2819 0.2460 25 6 14.0186 1.5257 0.1963 26 8 14.6587 0.7256 1.1940 27 6 14.2012 0.9884 2.5234 28 6 12.6924 0.7391 2.5967 29 6 5.6774 0.1793 -0.0035 30 6 4.3012 0.1069 0.0022 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 3.5864 3.4272 -0.0004 35 1 6.0413 3.5555 -0.0008 36 1 6.7195 2.4807 2.0927 37 1 8.2361 3.0476 2.8322 38 1 5.7186 5.4690 3.9984 39 1 10.2010 2.3560 -0.2287 40 1 10.1458 3.4632 1.1639 41 1 10.2300 1.5248 2.7081 42 1 10.2852 0.4177 1.3154 43 1 12.2992 0.2402 0.0020 44 1 12.0105 1.9317 -0.4738 45 1 14.2238 2.5789 0.3875 46 1 14.3996 1.2534 -0.7880 47 1 14.4117 2.0261 2.7823 48 1 14.7137 0.3276 3.2226 49 1 12.3296 0.9929 3.5928 50 1 12.4860 -0.3111 2.3907 51 1 6.2657 -0.7264 -0.0073 52 1 3.8110 -0.8555 0.0026 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069420917.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:10 Heat of formation + Delta-G solvation = -140.489107 kcal Electronic energy + Delta-G solvation = -34858.749209 eV Core-core repulsion = 30209.183369 eV Total energy + Delta-G solvation = -4649.565839 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 376.188 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.77874 -41.22344 -40.47359 -39.19269 -37.54215 -37.42223 -36.46432 -34.55925 -33.02057 -32.18581 -32.06330 -30.98967 -29.15629 -28.76980 -27.37235 -25.66936 -25.04012 -24.82582 -23.65946 -23.36508 -22.11177 -21.37911 -20.44550 -19.14953 -18.64091 -18.38776 -17.97905 -17.84375 -17.42448 -17.22386 -16.99378 -16.50565 -16.27309 -16.18897 -15.97574 -15.76067 -15.72067 -15.45900 -15.10297 -14.73667 -14.57277 -14.51882 -14.31577 -14.21567 -14.11824 -13.74362 -13.53326 -13.45975 -13.26473 -13.07010 -13.00314 -12.82887 -12.61753 -12.52444 -12.32836 -12.19763 -12.04176 -11.84238 -11.79744 -11.76717 -11.71258 -11.48975 -10.97615 -10.70537 -10.59026 -10.11001 -9.95561 -9.63113 -9.43684 -8.20233 -6.31773 -0.61512 0.36830 1.20260 1.43501 1.46452 1.51403 1.60093 1.75712 2.05866 2.41282 2.74784 2.81395 2.97870 3.11461 3.48913 3.65984 3.81224 3.87827 3.92813 3.97576 3.99129 4.10814 4.19215 4.29300 4.31155 4.31612 4.34206 4.38144 4.40112 4.45654 4.58536 4.67778 4.70491 4.71479 4.74844 4.81532 4.85140 4.90161 4.96145 5.01403 5.04320 5.07122 5.17890 5.21627 5.34792 5.37803 5.60634 5.71962 5.76497 5.88823 5.92080 6.03331 6.16487 6.45642 6.59676 6.76898 7.12935 7.37648 8.85292 Molecular weight = 376.19amu Principal moments of inertia in cm(-1) A = 0.008998 B = 0.002524 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.103073 B =11092.141327 C =13404.462318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.515 3.485 4 O -0.534 6.534 5 C -0.122 4.122 6 C -0.071 4.071 7 C -0.084 4.084 8 C -0.100 4.100 9 C 0.554 3.446 10 O -0.579 6.579 11 N -0.586 5.586 12 C 0.252 3.748 13 C -0.539 4.539 14 H 0.061 0.939 15 C 0.034 3.966 16 N -0.911 5.911 17 Si 0.941 3.059 18 H -0.269 1.269 19 H -0.287 1.287 20 H -0.270 1.270 21 C 0.129 3.871 22 C 0.059 3.941 23 N -0.538 5.538 24 C 0.015 3.985 25 C 0.067 3.933 26 O -0.403 6.403 27 C 0.066 3.934 28 C 0.016 3.984 29 C -0.089 4.089 30 C -0.060 4.060 31 H 0.140 0.860 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.131 0.869 35 H 0.151 0.849 36 H 0.030 0.970 37 H 0.021 0.979 38 H 0.267 0.733 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.024 0.976 43 H 0.031 0.969 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.115 0.885 47 H 0.064 0.936 48 H 0.119 0.881 49 H 0.095 0.905 50 H 0.035 0.965 51 H 0.151 0.849 52 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.166 -10.736 -3.500 11.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.361 3.639 4 O -0.425 6.425 5 C -0.123 4.123 6 C -0.089 4.089 7 C -0.102 4.102 8 C -0.103 4.103 9 C 0.342 3.658 10 O -0.462 6.462 11 N -0.315 5.315 12 C 0.132 3.868 13 C -0.577 4.577 14 H 0.079 0.921 15 C -0.168 4.168 16 N -0.550 5.550 17 Si 0.767 3.233 18 H -0.194 1.194 19 H -0.213 1.213 20 H -0.195 1.195 21 C 0.006 3.994 22 C -0.070 4.070 23 N -0.263 5.263 24 C -0.113 4.113 25 C -0.009 4.009 26 O -0.322 6.322 27 C -0.011 4.011 28 C -0.112 4.112 29 C -0.107 4.107 30 C -0.078 4.078 31 H 0.158 0.842 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.149 0.851 35 H 0.169 0.831 36 H 0.048 0.952 37 H 0.040 0.960 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.042 0.958 43 H 0.050 0.950 44 H 0.105 0.895 45 H 0.083 0.917 46 H 0.133 0.867 47 H 0.082 0.918 48 H 0.137 0.863 49 H 0.113 0.887 50 H 0.054 0.946 51 H 0.168 0.832 52 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.434 -10.365 -3.641 11.252 hybrid contribution -1.125 0.811 0.023 1.387 sum 1.309 -9.553 -3.618 10.299 Atomic orbital electron populations 1.23644 0.74051 1.06155 1.02658 1.86525 1.25408 1.31009 1.83721 1.21284 0.89029 0.81701 0.71854 1.90810 1.67293 1.37194 1.47212 1.19310 0.89181 0.95301 1.08516 1.21183 0.94289 0.97135 0.96320 1.21974 0.93420 0.99871 0.94979 1.20213 0.92912 0.95393 1.01800 1.18627 0.87811 0.78969 0.80359 1.90676 1.68094 1.45828 1.41560 1.48126 1.07814 1.43951 1.31618 1.19198 0.90974 0.91139 0.85530 1.21467 1.35394 0.97584 1.03287 0.92106 1.25482 0.95189 1.01439 0.94661 1.69990 1.37149 1.37509 1.10317 0.85852 0.78529 0.80653 0.78264 1.19371 1.21277 1.19550 1.21261 0.78528 0.99477 1.00133 1.22235 0.87201 0.96996 1.00526 1.62158 1.03962 1.54969 1.05235 1.22870 0.97649 0.99845 0.90901 1.22750 0.89615 0.95739 0.92828 1.87939 1.63883 1.63646 1.16742 1.22786 0.91875 1.02355 0.84071 1.22871 0.96222 0.95094 0.96966 1.21302 0.94771 0.96487 0.98166 1.21520 0.92636 0.98471 0.95155 0.84214 0.92052 0.91735 0.85133 0.83123 0.95156 0.96045 0.92412 0.91033 0.89729 0.90770 0.95766 0.95038 0.89492 0.91665 0.86674 0.91773 0.86281 0.88672 0.94632 0.83175 0.80907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.35 -8.25 9.81 -56.07 -0.55 -8.80 16 3 C 0.52 15.65 7.90 70.39 0.56 16.21 16 4 O -0.53 -19.09 16.12 20.02 0.32 -18.77 16 5 C -0.12 -3.84 5.88 -20.05 -0.12 -3.96 16 6 C -0.07 -2.57 9.58 22.50 0.22 -2.36 16 7 C -0.08 -3.28 7.74 22.49 0.17 -3.11 16 8 C -0.10 -3.73 4.68 -20.04 -0.09 -3.82 16 9 C 0.55 22.27 7.20 86.85 0.63 22.90 16 10 O -0.58 -24.75 16.66 -3.81 -0.06 -24.81 16 11 N -0.59 -23.48 2.46 -829.35 -2.04 -25.52 16 12 C 0.25 11.40 4.66 85.63 0.40 11.80 16 13 C -0.54 -25.91 6.50 25.60 0.17 -25.74 16 14 H 0.06 2.93 7.69 -2.91 -0.02 2.91 16 15 C 0.03 1.70 5.46 84.65 0.46 2.16 16 16 N -0.91 -48.35 13.29 21.45 0.28 -48.06 16 17 Si 0.94 40.21 29.54 68.60 2.03 42.24 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 21 C 0.13 4.58 5.32 86.38 0.46 5.03 16 22 C 0.06 1.87 5.28 86.30 0.46 2.33 16 23 N -0.54 -14.58 4.73 -895.19 -4.23 -18.81 16 24 C 0.02 0.39 5.44 86.31 0.47 0.86 16 25 C 0.07 1.41 7.01 72.01 0.50 1.92 16 26 O -0.40 -9.39 10.83 -148.98 -1.61 -11.00 16 27 C 0.07 1.28 7.01 72.02 0.50 1.79 16 28 C 0.02 0.37 5.65 86.32 0.49 0.86 16 29 C -0.09 -2.69 9.70 22.49 0.22 -2.47 16 30 C -0.06 -1.61 9.60 22.50 0.22 -1.39 16 31 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.13 4.82 7.64 -2.91 -0.02 4.79 16 35 H 0.15 6.50 4.95 -2.91 -0.01 6.49 16 36 H 0.03 1.46 6.11 -2.39 -0.01 1.45 16 37 H 0.02 1.04 8.12 -2.39 -0.02 1.02 16 38 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 39 H 0.07 2.53 5.87 -2.39 -0.01 2.52 16 40 H 0.08 3.09 8.07 -2.39 -0.02 3.08 16 41 H 0.07 2.39 8.04 -2.39 -0.02 2.37 16 42 H 0.02 0.82 8.12 -2.39 -0.02 0.80 16 43 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.09 2.23 6.38 -2.39 -0.02 2.22 16 45 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.09 1.98 8.09 -2.39 -0.02 1.96 16 50 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 52 H 0.17 3.37 7.60 -2.91 -0.02 3.35 16 Total: -1.00 -62.79 426.21 1.97 -60.82 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.93 Total: 28.06 kcal Atomic # 6 Polarization: 17.76 SS G_CDS: 6.90 Total: 24.66 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -5.99 Total: -92.39 kcal Atomic # 8 Polarization: -61.48 SS G_CDS: -1.90 Total: -63.38 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -62.79 1.97 -60.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069420917.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.668 kcal (2) G-P(sol) polarization free energy of solvation -62.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds