Wall clock time and date at job start Tue Mar 31 2020 06:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00335 * 2 1 4 4 H 1.48504 * 109.47182 * 270.00263 * 3 2 1 5 5 H 1.48512 * 109.47017 * 29.99515 * 3 2 1 6 6 H 1.48499 * 109.47735 * 149.99694 * 3 2 1 7 7 C 1.37884 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00249 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99931 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47170 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46948 * 180.02562 * 10 9 7 12 12 C 1.35977 * 116.99780 * 180.02562 * 11 10 9 13 13 C 1.38805 * 120.49848 * 0.25067 * 12 11 10 14 14 C 1.38775 * 118.44809 * 180.24279 * 13 12 11 15 15 C 1.38094 * 119.35336 * 359.75446 * 14 13 12 16 16 N 1.31951 * 120.95452 * 359.97438 * 15 14 13 17 17 C 1.32278 * 121.69231 * 0.02562 * 16 15 14 18 18 N 1.39574 * 119.72782 * 179.97438 * 17 16 15 19 19 C 1.34783 * 120.00262 * 0.02562 * 18 17 16 20 20 O 1.21288 * 119.99370 * 359.97438 * 19 18 17 21 21 C 1.50693 * 120.00257 * 179.97438 * 19 18 17 22 22 C 1.50700 * 109.47036 * 179.97438 * 21 19 18 23 23 C 1.36127 * 120.17386 * 264.99852 * 22 21 19 24 24 C 1.39334 * 120.98660 * 179.97438 * 23 22 21 25 25 C 1.36121 * 120.99105 * 0.02562 * 24 23 22 26 26 C 1.40505 * 119.65594 * 359.97420 * 25 24 23 27 27 C 1.40547 * 121.29358 * 179.72903 * 26 25 24 28 28 C 1.36091 * 119.65229 * 179.77585 * 27 26 25 29 29 C 1.39378 * 120.99195 * 0.50990 * 28 27 26 30 30 C 1.36088 * 120.99903 * 359.73757 * 29 28 27 31 31 C 1.40499 * 120.17169 * 84.95842 * 22 21 19 32 32 H 0.97000 * 120.00024 * 0.02562 * 1 2 3 33 33 H 1.09009 * 109.46791 * 60.00153 * 9 7 2 34 34 H 1.08998 * 109.47312 * 300.00988 * 9 7 2 35 35 H 1.09004 * 109.46681 * 60.00698 * 10 9 7 36 36 H 1.08992 * 109.47533 * 300.00492 * 10 9 7 37 37 H 1.07998 * 120.77701 * 359.97438 * 13 12 11 38 38 H 1.07994 * 120.32592 * 179.77589 * 14 13 12 39 39 H 1.08001 * 119.52107 * 180.02562 * 15 14 13 40 40 H 0.96999 * 120.00385 * 180.02562 * 18 17 16 41 41 H 1.09007 * 109.46683 * 60.00224 * 21 19 18 42 42 H 1.08996 * 109.47347 * 300.00070 * 21 19 18 43 43 H 1.07995 * 119.50629 * 359.97438 * 23 22 21 44 44 H 1.07998 * 119.50051 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.17689 * 179.97438 * 25 24 23 46 46 H 1.08001 * 120.17054 * 0.02562 * 27 26 25 47 47 H 1.08000 * 119.50404 * 180.25240 * 28 27 26 48 48 H 1.08008 * 119.50499 * 179.75791 * 29 28 27 49 49 H 1.07994 * 120.17632 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6366 0.0014 11 8 5.4505 -2.6366 0.0014 12 6 6.0678 -3.8482 0.0021 13 6 5.3219 -5.0188 -0.0026 14 6 5.9957 -6.2320 0.0035 15 6 7.3767 -6.2393 0.0087 16 7 8.0614 -5.1114 0.0075 17 6 7.4599 -3.9333 0.0018 18 7 8.2246 -2.7657 0.0013 19 6 9.5703 -2.8414 0.0061 20 8 10.1166 -3.9243 0.0113 21 6 10.3960 -1.5808 0.0049 22 6 11.8598 -1.9391 0.0116 23 6 12.5444 -1.9982 1.1867 24 6 13.8978 -2.3282 1.2127 25 6 14.5749 -2.6006 0.0637 26 6 13.9019 -2.5496 -1.1687 27 6 14.5686 -2.8190 -2.3763 28 6 13.8829 -2.7646 -3.5506 29 6 12.5289 -2.4349 -3.5764 30 6 11.8517 -2.1629 -2.4278 31 6 12.5248 -2.2147 -1.1949 32 1 -0.4850 0.8400 -0.0004 33 1 3.8752 -0.6797 0.8896 34 1 3.8745 -0.6808 -0.8904 35 1 3.6578 -3.1513 -0.8880 36 1 3.6584 -3.1495 0.8919 37 1 4.2425 -4.9863 -0.0064 38 1 5.4456 -7.1613 0.0037 39 1 7.9038 -7.1819 0.0130 40 1 7.7877 -1.8997 -0.0025 41 1 10.1622 -0.9926 0.8924 42 1 10.1683 -0.9981 -0.8876 43 1 12.0307 -1.7861 2.1128 44 1 14.4176 -2.3676 2.1585 45 1 15.6240 -2.8545 0.0990 46 1 15.6186 -3.0718 -2.3719 47 1 14.3966 -2.9760 -4.4767 48 1 12.0092 -2.3949 -4.5224 49 1 10.8026 -1.9093 -2.4632 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069457829.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:57 Heat of formation + Delta-G solvation = 15.257451 kcal Electronic energy + Delta-G solvation = -32470.576560 eV Core-core repulsion = 28135.073318 eV Total energy + Delta-G solvation = -4335.503242 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.11754 -40.62189 -39.19130 -37.88010 -36.73770 -34.89304 -33.98873 -33.46683 -31.75461 -31.07243 -30.52462 -30.42344 -29.34487 -27.65081 -25.66741 -23.87995 -23.40463 -23.19140 -22.84787 -21.54956 -20.69165 -20.13621 -18.44104 -17.77939 -17.71835 -17.29423 -17.13871 -16.59227 -16.43825 -15.92321 -15.80416 -15.33203 -15.02161 -14.61979 -14.49160 -14.28585 -14.17044 -14.00644 -13.86577 -13.63089 -13.53988 -13.36850 -13.09949 -12.91474 -12.59522 -12.29985 -12.14780 -12.11021 -12.07585 -11.52254 -11.27292 -11.15002 -11.01050 -10.99051 -10.75760 -10.44178 -10.29097 -10.18059 -10.01733 -9.95503 -9.46750 -9.28685 -9.09270 -8.78804 -8.71697 -8.05723 -7.74759 -6.22332 -4.24177 0.30697 0.84093 1.14578 1.38189 1.81627 2.63965 2.71090 2.93281 3.20410 3.28441 3.31087 3.40400 3.90720 3.94588 4.20844 4.29834 4.40456 4.51009 4.57800 4.67474 4.76087 4.79546 4.89499 4.91790 4.97108 5.06177 5.11357 5.11900 5.16231 5.22666 5.27732 5.28656 5.40919 5.53874 5.73728 5.74786 5.76267 5.89534 5.98660 6.00674 6.03624 6.12476 6.22199 6.25869 6.32943 6.34211 6.42385 6.52237 6.61384 6.80623 6.91119 7.09126 7.18311 7.47524 7.60674 7.99510 8.28579 8.29087 8.77850 9.37136 10.90053 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.010129 B = 0.002025 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.808496 B =13821.296016 C =15167.140330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.530 4.530 8 H 0.075 0.925 9 C -0.007 4.007 10 C 0.073 3.927 11 O -0.320 6.320 12 C 0.066 3.934 13 C -0.146 4.146 14 C -0.159 4.159 15 C 0.077 3.923 16 N -0.443 5.443 17 C 0.329 3.671 18 N -0.654 5.654 19 C 0.503 3.497 20 O -0.466 6.466 21 C -0.106 4.106 22 C -0.050 4.050 23 C -0.103 4.103 24 C -0.112 4.112 25 C -0.108 4.108 26 C -0.051 4.051 27 C -0.108 4.108 28 C -0.117 4.117 29 C -0.117 4.117 30 C -0.102 4.102 31 C -0.033 4.033 32 H 0.267 0.733 33 H 0.028 0.972 34 H 0.024 0.976 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.146 0.854 38 H 0.135 0.865 39 H 0.157 0.843 40 H 0.423 0.577 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.536 -5.844 -1.858 28.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.045 4.045 10 C -0.001 4.001 11 O -0.233 6.233 12 C 0.014 3.986 13 C -0.173 4.173 14 C -0.181 4.181 15 C -0.080 4.080 16 N -0.158 5.158 17 C 0.096 3.904 18 N -0.303 5.303 19 C 0.288 3.712 20 O -0.334 6.334 21 C -0.146 4.146 22 C -0.051 4.051 23 C -0.121 4.121 24 C -0.130 4.130 25 C -0.126 4.126 26 C -0.051 4.051 27 C -0.126 4.126 28 C -0.135 4.135 29 C -0.135 4.135 30 C -0.120 4.120 31 C -0.033 4.033 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.164 0.836 38 H 0.153 0.847 39 H 0.174 0.826 40 H 0.260 0.740 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.139 0.861 48 H 0.140 0.860 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 28.822 -6.284 -1.847 29.557 hybrid contribution -1.263 1.092 -0.017 1.670 sum 27.559 -5.192 -1.865 28.106 Atomic orbital electron populations 1.69886 1.06290 1.27314 1.49808 1.24944 0.94780 0.99243 0.94060 0.86751 0.80405 0.83286 0.78748 1.20046 1.21143 1.18780 1.20808 0.88224 0.94972 1.52729 0.90733 1.19582 0.97042 0.89956 0.97892 1.23140 0.73956 1.02266 1.00688 1.86042 1.24572 1.24780 1.87883 1.19551 0.91035 0.86980 1.01021 1.21638 1.01273 0.91410 1.02935 1.21911 0.95514 0.98273 1.02357 1.22430 0.91133 0.95596 0.98831 1.67633 1.38447 0.96294 1.13460 1.17805 0.84533 0.87219 1.00801 1.43500 1.06350 1.07794 1.72653 1.20647 0.81613 0.91541 0.77358 1.90832 1.70438 1.28991 1.43147 1.20719 0.91523 0.96362 1.05969 1.19042 0.93411 0.99722 0.92907 1.20704 0.94568 0.99518 0.97342 1.20787 0.94379 0.99493 0.98389 1.20999 0.99691 1.00153 0.91722 1.18042 0.92903 1.00179 0.93977 1.21001 0.99668 1.00126 0.91759 1.20841 0.94595 0.99986 0.98121 1.20852 0.94649 0.99560 0.98399 1.21033 0.99576 0.99605 0.91806 1.17834 0.92930 0.99344 0.93164 0.92358 0.95378 0.95804 0.92342 0.92318 0.83601 0.84689 0.82615 0.73963 0.87270 0.87443 0.85946 0.85888 0.85673 0.85682 0.86065 0.86009 0.85917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.31 13.96 55.43 0.77 -25.54 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 20.51 27.47 -169.99 -4.67 15.84 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 7 C -0.53 -14.15 9.66 -34.44 -0.33 -14.48 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C -0.01 -0.16 4.41 -27.89 -0.12 -0.28 16 10 C 0.07 1.36 4.70 37.15 0.17 1.54 16 11 O -0.32 -5.42 9.39 -19.67 -0.18 -5.61 16 12 C 0.07 1.03 6.72 -38.91 -0.26 0.77 16 13 C -0.15 -2.05 9.14 -39.17 -0.36 -2.41 16 14 C -0.16 -1.94 10.10 -39.44 -0.40 -2.33 16 15 C 0.08 1.02 11.17 -17.55 -0.20 0.83 16 16 N -0.44 -7.21 7.88 -12.22 -0.10 -7.31 16 17 C 0.33 5.18 7.45 -154.44 -1.15 4.03 16 18 N -0.65 -8.77 5.39 -11.29 -0.06 -8.83 16 19 C 0.50 6.68 7.79 -10.99 -0.09 6.60 16 20 O -0.47 -7.96 14.29 5.55 0.08 -7.88 16 21 C -0.11 -1.00 5.23 -29.04 -0.15 -1.15 16 22 C -0.05 -0.55 4.38 -104.53 -0.46 -1.01 16 23 C -0.10 -1.04 9.57 -39.93 -0.38 -1.42 16 24 C -0.11 -1.02 9.95 -39.93 -0.40 -1.42 16 25 C -0.11 -1.00 9.77 -39.49 -0.39 -1.39 16 26 C -0.05 -0.55 5.74 -106.83 -0.61 -1.17 16 27 C -0.11 -0.99 9.77 -39.48 -0.39 -1.37 16 28 C -0.12 -1.04 9.95 -39.93 -0.40 -1.44 16 29 C -0.12 -1.13 9.95 -39.93 -0.40 -1.53 16 30 C -0.10 -1.12 9.28 -39.48 -0.37 -1.49 16 31 C -0.03 -0.38 5.74 -106.83 -0.61 -1.00 16 32 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.03 0.63 7.20 -51.92 -0.37 0.25 16 34 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 35 H 0.06 1.05 7.69 -51.93 -0.40 0.65 16 36 H 0.06 1.05 7.71 -51.93 -0.40 0.65 16 37 H 0.15 1.91 6.44 -52.49 -0.34 1.57 16 38 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.42 4.78 8.04 -40.82 -0.33 4.45 16 41 H 0.11 0.77 8.04 -51.92 -0.42 0.35 16 42 H 0.11 0.81 6.71 -51.93 -0.35 0.46 16 43 H 0.12 1.01 8.05 -52.49 -0.42 0.59 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 46 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 47 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 48 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 49 H 0.12 1.22 6.49 -52.49 -0.34 0.88 16 LS Contribution 411.68 15.07 6.20 6.20 Total: -1.00 -34.52 411.68 -11.64 -46.16 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.31 Total: 5.18 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -7.38 Total: -18.23 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.62 Total: -41.67 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.11 Total: -13.49 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.52 -11.64 -46.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069457829.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.415 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds