Wall clock time and date at job start Tue Mar 31 2020 06:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35973 * 116.99587 * 179.97438 * 11 10 9 13 13 C 1.38801 * 120.50125 * 0.02562 * 12 11 10 14 14 C 1.38775 * 118.45054 * 179.97438 * 13 12 11 15 15 C 1.38093 * 119.35013 * 359.97438 * 14 13 12 16 16 N 1.31949 * 120.95747 * 359.97438 * 15 14 13 17 17 C 1.32276 * 121.69079 * 359.70619 * 16 15 14 18 18 N 1.39581 * 119.72745 * 180.30946 * 17 16 15 19 19 C 1.34774 * 119.99990 * 0.26696 * 18 17 16 20 20 O 1.21278 * 120.00122 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99823 * 179.97438 * 19 18 17 22 22 C 1.53002 * 109.46873 * 179.97438 * 21 19 18 23 23 C 1.50707 * 109.47099 * 180.02562 * 22 21 19 24 24 C 1.38203 * 120.00223 * 264.73040 * 23 22 21 25 25 C 1.38432 * 120.00086 * 179.76956 * 24 23 22 26 26 F 1.35094 * 120.00320 * 180.26784 * 25 24 23 27 27 C 1.38478 * 119.99568 * 0.52763 * 25 24 23 28 28 C 1.38166 * 119.99947 * 359.72080 * 27 25 24 29 29 C 1.38424 * 119.99549 * 85.00376 * 23 22 21 30 30 F 1.35104 * 120.00422 * 359.97438 * 29 23 22 31 31 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 33 33 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 34 34 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 35 35 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 36 36 H 1.08002 * 120.77385 * 359.97438 * 13 12 11 37 37 H 1.07998 * 120.32288 * 179.97438 * 14 13 12 38 38 H 1.08000 * 119.51530 * 179.97438 * 15 14 13 39 39 H 0.97000 * 119.99860 * 180.26729 * 18 17 16 40 40 H 1.08995 * 109.47400 * 300.00387 * 21 19 18 41 41 H 1.09002 * 109.46923 * 60.00258 * 21 19 18 42 42 H 1.08995 * 109.47518 * 300.00430 * 22 21 19 43 43 H 1.08996 * 109.46838 * 60.00844 * 22 21 19 44 44 H 1.07997 * 119.99932 * 0.02562 * 24 23 22 45 45 H 1.08001 * 119.99622 * 179.70461 * 27 25 24 46 46 H 1.07995 * 119.99617 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 8 5.4506 -2.6365 -0.0011 12 6 6.0678 -3.8481 -0.0006 13 6 5.3220 -5.0187 0.0004 14 6 5.9958 -6.2319 0.0004 15 6 7.3767 -6.2392 -0.0013 16 7 8.0614 -5.1112 -0.0032 17 6 7.4599 -3.9332 -0.0095 18 7 8.2247 -2.7656 -0.0179 19 6 9.5703 -2.8414 -0.0251 20 8 10.1166 -3.9241 -0.0247 21 6 10.3959 -1.5807 -0.0348 22 6 11.8820 -1.9445 -0.0409 23 6 12.7078 -0.6838 -0.0499 24 6 13.1723 -0.1706 -1.2460 25 6 13.9268 0.9901 -1.2547 26 9 14.3764 1.4948 -2.4244 27 6 14.2252 1.6308 -0.0639 28 6 13.7650 1.1148 1.1323 29 6 13.0056 -0.0431 1.1404 30 9 12.5557 -0.5476 2.3102 31 1 -0.4850 0.8401 0.0004 32 1 3.8753 -0.6796 0.8894 33 1 3.8746 -0.6807 -0.8905 34 1 3.6585 -3.1502 0.8903 35 1 3.6578 -3.1505 -0.8897 36 1 4.2425 -4.9861 0.0013 37 1 5.4456 -7.1612 0.0016 38 1 7.9039 -7.1818 -0.0009 39 1 7.7877 -1.8996 -0.0187 40 1 10.1602 -0.9988 -0.9257 41 1 10.1700 -0.9917 0.8542 42 1 12.1174 -2.5262 0.8503 43 1 12.1082 -2.5336 -0.9296 44 1 12.9433 -0.6727 -2.1743 45 1 14.8178 2.5336 -0.0703 46 1 13.9981 1.6143 2.0610 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069460996.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:08 Heat of formation + Delta-G solvation = -101.724328 kcal Electronic energy + Delta-G solvation = -32309.106791 eV Core-core repulsion = 27414.301309 eV Total energy + Delta-G solvation = -4894.805483 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.139 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -49.36869 -49.32942 -40.98651 -39.73189 -39.13688 -37.89225 -35.03648 -34.44385 -33.46907 -31.78821 -31.19381 -30.83621 -30.10986 -29.10291 -25.81800 -25.55646 -23.60961 -23.30597 -22.82680 -21.84379 -20.79575 -20.23851 -18.43865 -18.13685 -17.78188 -17.70029 -17.67542 -17.12306 -16.59647 -16.29565 -16.05977 -15.84471 -15.72726 -15.56374 -14.98689 -14.87896 -14.74751 -14.33386 -14.24888 -14.21398 -14.02923 -13.79660 -13.39794 -13.19958 -13.08547 -12.87617 -12.83035 -12.59617 -12.23610 -12.11858 -12.05969 -11.49198 -11.39503 -11.27210 -11.01213 -10.78925 -10.44586 -10.27813 -10.18130 -9.95751 -9.65796 -9.46811 -9.30105 -9.13490 -8.98089 -8.71662 -7.76283 -6.22306 -4.24213 0.43432 0.49877 1.12655 1.36855 2.60576 2.71137 2.90279 3.20576 3.28599 3.31369 3.39659 3.64796 3.70201 3.93167 3.97636 4.13715 4.29948 4.35240 4.50120 4.55165 4.63216 4.75113 4.79070 4.88472 5.02331 5.11432 5.13372 5.23683 5.27755 5.29176 5.39761 5.44032 5.49407 5.53936 5.73207 5.73890 5.75976 5.78053 5.98282 6.11320 6.24683 6.28386 6.33392 6.50837 6.90699 7.09114 7.16136 7.47046 7.60006 7.95919 8.25980 8.28554 8.77799 9.37219 10.90072 Molecular weight = 376.14amu Principal moments of inertia in cm(-1) A = 0.007049 B = 0.002096 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3971.464166 B =13355.795887 C =16350.422782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.530 4.530 8 H 0.075 0.925 9 C -0.007 4.007 10 C 0.073 3.927 11 O -0.320 6.320 12 C 0.066 3.934 13 C -0.146 4.146 14 C -0.159 4.159 15 C 0.076 3.924 16 N -0.444 5.444 17 C 0.328 3.672 18 N -0.653 5.653 19 C 0.506 3.494 20 O -0.480 6.480 21 C -0.136 4.136 22 C -0.066 4.066 23 C -0.086 4.086 24 C -0.121 4.121 25 C 0.092 3.908 26 F -0.135 7.135 27 C -0.129 4.129 28 C -0.122 4.122 29 C 0.093 3.907 30 F -0.130 7.130 31 H 0.267 0.733 32 H 0.028 0.972 33 H 0.024 0.976 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.147 0.853 37 H 0.136 0.864 38 H 0.157 0.843 39 H 0.424 0.576 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.147 0.853 45 H 0.145 0.855 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.517 -1.990 -0.052 27.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.045 4.045 10 C -0.001 4.001 11 O -0.233 6.233 12 C 0.015 3.985 13 C -0.173 4.173 14 C -0.180 4.180 15 C -0.080 4.080 16 N -0.159 5.159 17 C 0.095 3.905 18 N -0.301 5.301 19 C 0.291 3.709 20 O -0.350 6.350 21 C -0.176 4.176 22 C -0.103 4.103 23 C -0.087 4.087 24 C -0.140 4.140 25 C 0.072 3.928 26 F -0.113 7.113 27 C -0.148 4.148 28 C -0.141 4.141 29 C 0.074 3.926 30 F -0.108 7.108 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.164 0.836 37 H 0.153 0.847 38 H 0.175 0.825 39 H 0.261 0.739 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.165 0.835 45 H 0.163 0.837 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 28.796 -2.426 -0.047 28.898 hybrid contribution -1.199 1.284 -0.005 1.757 sum 27.597 -1.142 -0.052 27.621 Atomic orbital electron populations 1.69886 1.06292 1.27318 1.49819 1.24938 0.94771 0.99231 0.94045 0.86753 0.80410 0.83302 0.78752 1.20041 1.21129 1.18793 1.20805 0.88215 0.94978 1.52736 0.90727 1.19583 0.97049 0.89950 0.97898 1.23149 0.73928 1.02283 1.00699 1.86046 1.24600 1.24775 1.87846 1.19557 0.91052 0.86998 1.00917 1.21644 1.01299 0.91410 1.02912 1.21917 0.95529 0.98276 1.02270 1.22433 0.91145 0.95587 0.98865 1.67619 1.38476 0.96293 1.13506 1.17816 0.84582 0.87230 1.00888 1.43500 1.06463 1.07827 1.72319 1.20731 0.81779 0.91623 0.76721 1.90799 1.70575 1.29299 1.44284 1.21658 0.94319 0.96215 1.05404 1.20312 0.91283 0.92945 1.05775 1.19788 0.99642 0.98033 0.91209 1.20985 0.98585 0.95455 0.99000 1.17671 0.98838 0.94624 0.81634 1.91532 1.87283 1.86696 1.45821 1.21015 1.01906 1.01429 0.90450 1.21020 0.98365 0.95294 0.99426 1.17574 0.99014 0.94660 0.81386 1.91541 1.87229 1.86638 1.45419 0.92353 0.95368 0.95815 0.92291 0.92327 0.83581 0.84659 0.82543 0.73884 0.88125 0.88276 0.89086 0.88999 0.83482 0.83695 0.83560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.35 13.96 55.43 0.77 -25.57 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 20.57 27.47 -169.99 -4.67 15.90 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 7 C -0.53 -14.17 9.66 -34.44 -0.33 -14.50 16 8 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 9 C -0.01 -0.16 4.41 -27.88 -0.12 -0.29 16 10 C 0.07 1.36 4.70 37.16 0.17 1.53 16 11 O -0.32 -5.43 9.39 -19.66 -0.18 -5.62 16 12 C 0.07 1.04 6.72 -38.91 -0.26 0.77 16 13 C -0.15 -2.03 9.14 -39.17 -0.36 -2.39 16 14 C -0.16 -1.89 10.10 -39.44 -0.40 -2.29 16 15 C 0.08 0.99 11.17 -17.55 -0.20 0.79 16 16 N -0.44 -7.05 7.88 -12.22 -0.10 -7.15 16 17 C 0.33 5.10 7.45 -154.43 -1.15 3.95 16 18 N -0.65 -8.66 5.39 -11.29 -0.06 -8.72 16 19 C 0.51 6.37 7.79 -10.99 -0.09 6.29 16 20 O -0.48 -7.63 14.24 5.56 0.08 -7.55 16 21 C -0.14 -1.15 5.68 -27.88 -0.16 -1.31 16 22 C -0.07 -0.55 4.41 -27.88 -0.12 -0.67 16 23 C -0.09 -0.65 5.14 -104.56 -0.54 -1.19 16 24 C -0.12 -0.85 9.66 -39.52 -0.38 -1.23 16 25 C 0.09 0.67 7.30 -39.42 -0.29 0.38 16 26 F -0.13 -1.12 17.27 2.25 0.04 -1.08 16 27 C -0.13 -0.78 10.02 -39.52 -0.40 -1.17 16 28 C -0.12 -0.76 10.02 -39.52 -0.40 -1.16 16 29 C 0.09 0.74 7.24 -39.43 -0.29 0.45 16 30 F -0.13 -1.21 16.56 2.25 0.04 -1.17 16 31 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 33 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 34 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 35 H 0.06 1.05 7.70 -51.93 -0.40 0.65 16 36 H 0.15 1.90 6.44 -52.49 -0.34 1.56 16 37 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.16 1.57 8.06 -52.49 -0.42 1.14 16 39 H 0.42 4.83 8.04 -40.82 -0.33 4.50 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.09 0.87 7.75 -51.93 -0.40 0.47 16 43 H 0.09 0.75 8.01 -51.93 -0.42 0.34 16 44 H 0.15 0.83 8.06 -52.49 -0.42 0.40 16 45 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.15 0.62 8.06 -52.49 -0.42 0.19 16 LS Contribution 402.26 15.07 6.06 6.06 Total: -1.00 -33.16 402.26 -9.01 -42.17 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.60 Total: 2.85 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -5.39 Total: -10.11 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.62 Total: -41.44 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.11 Total: -13.17 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.08 Total: -2.26 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.16 -9.01 -42.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069460996.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.555 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds