Wall clock time and date at job start Tue Mar 31 2020 06:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35973 * 116.99587 * 179.97438 * 11 10 9 13 13 C 1.38801 * 120.50125 * 0.02562 * 12 11 10 14 14 C 1.38775 * 118.45054 * 179.97438 * 13 12 11 15 15 C 1.38093 * 119.35013 * 359.97438 * 14 13 12 16 16 N 1.31949 * 120.95747 * 359.97438 * 15 14 13 17 17 C 1.32276 * 121.69079 * 359.70619 * 16 15 14 18 18 N 1.39581 * 119.72745 * 180.30946 * 17 16 15 19 19 C 1.34774 * 119.99990 * 0.26696 * 18 17 16 20 20 O 1.21278 * 120.00122 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99823 * 179.97438 * 19 18 17 22 22 C 1.53002 * 109.46873 * 179.97438 * 21 19 18 23 23 C 1.50707 * 109.47099 * 180.02562 * 22 21 19 24 24 C 1.38203 * 120.00223 * 264.73040 * 23 22 21 25 25 C 1.38432 * 120.00086 * 179.76956 * 24 23 22 26 26 F 1.35094 * 120.00320 * 180.26784 * 25 24 23 27 27 C 1.38478 * 119.99568 * 0.52763 * 25 24 23 28 28 C 1.38166 * 119.99947 * 359.72080 * 27 25 24 29 29 C 1.38424 * 119.99549 * 85.00376 * 23 22 21 30 30 F 1.35104 * 120.00422 * 359.97438 * 29 23 22 31 31 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 33 33 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 34 34 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 35 35 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 36 36 H 1.08002 * 120.77385 * 359.97438 * 13 12 11 37 37 H 1.07998 * 120.32288 * 179.97438 * 14 13 12 38 38 H 1.08000 * 119.51530 * 179.97438 * 15 14 13 39 39 H 0.97000 * 119.99860 * 180.26729 * 18 17 16 40 40 H 1.08995 * 109.47400 * 300.00387 * 21 19 18 41 41 H 1.09002 * 109.46923 * 60.00258 * 21 19 18 42 42 H 1.08995 * 109.47518 * 300.00430 * 22 21 19 43 43 H 1.08996 * 109.46838 * 60.00844 * 22 21 19 44 44 H 1.07997 * 119.99932 * 0.02562 * 24 23 22 45 45 H 1.08001 * 119.99622 * 179.70461 * 27 25 24 46 46 H 1.07995 * 119.99617 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 8 5.4506 -2.6365 -0.0011 12 6 6.0678 -3.8481 -0.0006 13 6 5.3220 -5.0187 0.0004 14 6 5.9958 -6.2319 0.0004 15 6 7.3767 -6.2392 -0.0013 16 7 8.0614 -5.1112 -0.0032 17 6 7.4599 -3.9332 -0.0095 18 7 8.2247 -2.7656 -0.0179 19 6 9.5703 -2.8414 -0.0251 20 8 10.1166 -3.9241 -0.0247 21 6 10.3959 -1.5807 -0.0348 22 6 11.8820 -1.9445 -0.0409 23 6 12.7078 -0.6838 -0.0499 24 6 13.1723 -0.1706 -1.2460 25 6 13.9268 0.9901 -1.2547 26 9 14.3764 1.4948 -2.4244 27 6 14.2252 1.6308 -0.0639 28 6 13.7650 1.1148 1.1323 29 6 13.0056 -0.0431 1.1404 30 9 12.5557 -0.5476 2.3102 31 1 -0.4850 0.8401 0.0004 32 1 3.8753 -0.6796 0.8894 33 1 3.8746 -0.6807 -0.8905 34 1 3.6585 -3.1502 0.8903 35 1 3.6578 -3.1505 -0.8897 36 1 4.2425 -4.9861 0.0013 37 1 5.4456 -7.1612 0.0016 38 1 7.9039 -7.1818 -0.0009 39 1 7.7877 -1.8996 -0.0187 40 1 10.1602 -0.9988 -0.9257 41 1 10.1700 -0.9917 0.8542 42 1 12.1174 -2.5262 0.8503 43 1 12.1082 -2.5336 -0.9296 44 1 12.9433 -0.6727 -2.1743 45 1 14.8178 2.5336 -0.0703 46 1 13.9981 1.6143 2.0610 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069460996.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:07 Heat of formation + Delta-G solvation = -119.748045 kcal Electronic energy + Delta-G solvation = -32309.888358 eV Core-core repulsion = 27414.301309 eV Total energy + Delta-G solvation = -4895.587050 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.139 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -49.96250 -49.94616 -42.06458 -40.61662 -39.87057 -39.10706 -36.04155 -35.40246 -35.14967 -33.07908 -32.58030 -31.61023 -30.89508 -30.06991 -27.31888 -26.45812 -24.67426 -24.02751 -23.84249 -22.70075 -22.22403 -21.24841 -19.68488 -19.10455 -18.73122 -18.45050 -18.27256 -18.22860 -17.96118 -17.24483 -17.01502 -16.82674 -16.62165 -16.36759 -16.28712 -15.94030 -15.43910 -15.43378 -15.25705 -15.20327 -15.03990 -14.74677 -14.48585 -14.20885 -14.08740 -13.81691 -13.75287 -13.55001 -13.48855 -13.34740 -12.85123 -12.70947 -12.65090 -12.19582 -12.12000 -11.96494 -11.87953 -11.81587 -11.64670 -11.47564 -11.35481 -10.80251 -10.42677 -10.25897 -10.09731 -9.56118 -8.87560 -8.33219 -6.40166 -0.11395 0.00229 0.07587 0.26807 1.38217 1.40010 1.51476 1.64267 1.82029 2.08837 2.33006 2.34534 2.86343 3.02435 3.08775 3.16781 3.30145 3.54041 3.62708 3.75754 3.83443 3.88234 4.01005 4.05080 4.09983 4.18177 4.22825 4.23762 4.29963 4.44322 4.56204 4.67052 4.68146 4.74302 4.94378 4.95215 4.98537 5.01253 5.06009 5.09463 5.14026 5.19345 5.27140 5.32711 5.48705 5.58581 5.76273 6.16607 6.20462 6.27100 6.66522 6.92325 7.25154 7.26448 8.82308 Molecular weight = 376.14amu Principal moments of inertia in cm(-1) A = 0.007049 B = 0.002096 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3971.464166 B =13355.795887 C =16350.422782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.948 3.052 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.244 1.244 7 C -0.536 4.536 8 H 0.042 0.958 9 C -0.005 4.005 10 C 0.086 3.914 11 O -0.323 6.323 12 C 0.042 3.958 13 C -0.150 4.150 14 C -0.147 4.147 15 C 0.075 3.925 16 N -0.473 5.473 17 C 0.313 3.687 18 N -0.652 5.652 19 C 0.504 3.496 20 O -0.517 6.517 21 C -0.126 4.126 22 C -0.060 4.060 23 C -0.089 4.089 24 C -0.122 4.122 25 C 0.079 3.921 26 F -0.142 7.142 27 C -0.122 4.122 28 C -0.118 4.118 29 C 0.077 3.923 30 F -0.142 7.142 31 H 0.269 0.731 32 H 0.031 0.969 33 H 0.030 0.970 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.153 0.847 37 H 0.172 0.828 38 H 0.186 0.814 39 H 0.430 0.570 40 H 0.124 0.876 41 H 0.110 0.890 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.158 0.842 45 H 0.168 0.832 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.457 -1.248 -0.128 29.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.187 4.187 3 Si 0.771 3.229 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.574 4.574 8 H 0.060 0.940 9 C -0.043 4.043 10 C 0.012 3.988 11 O -0.237 6.237 12 C -0.008 4.008 13 C -0.177 4.177 14 C -0.168 4.168 15 C -0.082 4.082 16 N -0.188 5.188 17 C 0.081 3.919 18 N -0.301 5.301 19 C 0.292 3.708 20 O -0.390 6.390 21 C -0.165 4.165 22 C -0.098 4.098 23 C -0.090 4.090 24 C -0.141 4.141 25 C 0.060 3.940 26 F -0.121 7.121 27 C -0.141 4.141 28 C -0.137 4.137 29 C 0.058 3.942 30 F -0.120 7.120 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.170 0.830 37 H 0.190 0.810 38 H 0.202 0.798 39 H 0.269 0.731 40 H 0.142 0.858 41 H 0.128 0.872 42 H 0.093 0.907 43 H 0.109 0.891 44 H 0.176 0.824 45 H 0.186 0.814 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 30.754 -1.680 -0.123 30.800 hybrid contribution -1.786 0.881 0.018 1.992 sum 28.968 -0.799 -0.106 28.979 Atomic orbital electron populations 1.70032 1.08229 1.28448 1.51659 1.25901 0.95592 1.03416 0.93755 0.85683 0.79622 0.78206 0.79346 1.19045 1.21028 1.16757 1.21120 0.90688 0.93791 1.51772 0.93995 1.19434 0.94140 0.92583 0.98105 1.22755 0.75173 0.99857 1.01037 1.85967 1.23226 1.25832 1.88630 1.19686 0.91282 0.86923 1.02954 1.21898 1.01726 0.91731 1.02343 1.22266 0.95267 0.98952 1.00296 1.23036 0.91942 0.95899 0.97305 1.67686 1.39496 0.97093 1.14565 1.18028 0.84805 0.87908 1.01174 1.43620 1.06762 1.07667 1.72035 1.21420 0.81583 0.92427 0.75354 1.90772 1.71104 1.31025 1.46051 1.21675 0.93549 0.94345 1.06980 1.20199 0.91368 0.93257 1.04931 1.19668 1.00099 0.97788 0.91492 1.21082 0.98313 0.95474 0.99190 1.17864 0.99285 0.94993 0.81840 1.91515 1.87435 1.86807 1.46336 1.21282 1.01269 1.01809 0.89724 1.21253 0.97417 0.94567 1.00444 1.17834 0.99854 0.95506 0.81021 1.91511 1.87520 1.86936 1.46068 0.92218 0.95099 0.95168 0.92085 0.92029 0.82970 0.81024 0.79752 0.73094 0.85813 0.87153 0.90734 0.89112 0.82449 0.81424 0.81474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.66 13.96 21.45 0.30 -56.36 16 2 C 0.01 0.63 5.47 84.65 0.46 1.10 16 3 Si 0.95 41.82 27.47 68.60 1.88 43.70 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 7 C -0.54 -28.98 9.66 25.60 0.25 -28.73 16 8 H 0.04 2.46 7.99 -2.91 -0.02 2.44 16 9 C -0.01 -0.22 4.41 29.85 0.13 -0.09 16 10 C 0.09 3.14 4.70 71.98 0.34 3.48 16 11 O -0.32 -10.71 9.39 -93.25 -0.88 -11.58 16 12 C 0.04 1.29 6.72 22.70 0.15 1.44 16 13 C -0.15 -3.97 9.14 22.53 0.21 -3.76 16 14 C -0.15 -3.15 10.10 22.36 0.23 -2.92 16 15 C 0.07 1.80 11.17 84.64 0.95 2.74 16 16 N -0.47 -14.70 7.88 -192.58 -1.52 -16.21 16 17 C 0.31 9.60 7.45 132.98 0.99 10.59 16 18 N -0.65 -17.00 5.39 -308.03 -1.66 -18.66 16 19 C 0.50 12.56 7.79 87.66 0.68 13.24 16 20 O -0.52 -16.60 14.24 -3.02 -0.04 -16.64 16 21 C -0.13 -2.01 5.68 29.85 0.17 -1.84 16 22 C -0.06 -0.98 4.41 29.85 0.13 -0.84 16 23 C -0.09 -1.28 5.14 -19.83 -0.10 -1.38 16 24 C -0.12 -1.55 9.66 22.31 0.22 -1.33 16 25 C 0.08 1.03 7.30 22.37 0.16 1.20 16 26 F -0.14 -2.17 17.27 44.97 0.78 -1.40 16 27 C -0.12 -1.19 10.02 22.31 0.22 -0.97 16 28 C -0.12 -1.23 10.02 22.31 0.22 -1.01 16 29 C 0.08 1.13 7.24 22.37 0.16 1.30 16 30 F -0.14 -2.56 16.56 44.97 0.74 -1.81 16 31 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.03 1.33 7.20 -2.39 -0.02 1.32 16 33 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 34 H 0.06 2.17 7.70 -2.39 -0.02 2.15 16 35 H 0.06 2.18 7.70 -2.39 -0.02 2.16 16 36 H 0.15 3.76 6.44 -2.91 -0.02 3.74 16 37 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 38 H 0.19 3.21 8.06 -2.91 -0.02 3.19 16 39 H 0.43 9.49 8.04 -92.71 -0.75 8.75 16 40 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.07 1.46 7.75 -2.39 -0.02 1.44 16 43 H 0.09 1.47 8.01 -2.39 -0.02 1.45 16 44 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 45 H 0.17 0.82 8.06 -2.91 -0.02 0.79 16 46 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -72.96 402.26 5.42 -67.54 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.24 Total: 19.22 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 5.57 Total: -7.79 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -2.88 Total: -91.23 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.92 Total: -28.23 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 1.52 Total: -3.21 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.88 Total: 43.70 kcal Total: -72.96 5.42 -67.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069460996.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.212 kcal (2) G-P(sol) polarization free energy of solvation -72.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds