Wall clock time and date at job start Tue Mar 31 2020 05:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36416 * 119.92926 * 2 1 4 4 C 1.40844 * 118.91332 * 180.25550 * 3 2 1 5 5 O 1.21982 * 120.65066 * 179.70984 * 4 3 2 6 6 N 1.35034 * 118.69329 * 359.47013 * 4 3 2 7 7 H 0.97004 * 120.12948 * 180.24833 * 6 4 3 8 8 C 1.36371 * 119.72727 * 0.51350 * 6 4 3 9 9 C 1.47511 * 119.43598 * 179.72997 * 8 6 4 10 10 C 1.39792 * 120.07923 * 359.74805 * 9 8 6 11 11 C 1.37671 * 119.91913 * 179.72200 * 10 9 8 12 12 C 1.39142 * 120.08089 * 0.57710 * 11 10 9 13 13 N 1.39416 * 119.92286 * 179.72105 * 12 11 10 14 14 C 1.34782 * 119.99849 * 213.83180 * 13 12 11 15 15 O 1.21550 * 119.99971 * 5.14613 * 14 13 12 16 16 C 1.47843 * 119.99954 * 185.14602 * 14 13 12 17 17 C 1.39943 * 120.02447 * 359.72236 * 16 14 13 18 18 C 1.38328 * 120.35226 * 179.73803 * 17 16 14 19 19 C 1.37762 * 120.41567 * 0.51837 * 18 17 16 20 20 C 1.40753 * 120.03843 * 359.76191 * 19 18 17 21 21 C 1.41443 * 120.17386 * 179.97438 * 20 19 18 22 22 H 1.08007 * 119.99907 * 332.12823 * 21 20 19 23 23 C 1.39932 * 120.00172 * 152.12640 * 21 20 19 24 24 N 1.30827 * 119.99655 * 348.80112 * 23 21 20 25 25 Si 1.86803 * 120.00272 * 168.79843 * 23 21 20 26 26 H 1.48505 * 109.46962 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47101 * 120.00028 * 25 23 21 28 28 H 1.48495 * 109.47110 * 240.00102 * 25 23 21 29 29 C 1.39012 * 120.02569 * 180.02562 * 16 14 13 30 30 C 1.39143 * 120.15133 * 359.69650 * 12 11 10 31 31 C 1.37673 * 120.07788 * 0.02562 * 30 12 11 32 32 N 1.31790 * 121.12107 * 359.75789 * 8 6 4 33 33 H 1.09004 * 109.47320 * 89.99360 * 1 2 3 34 34 H 1.09000 * 109.47680 * 209.99710 * 1 2 3 35 35 H 1.09001 * 109.47143 * 329.99543 * 1 2 3 36 36 H 1.08008 * 120.54106 * 359.97438 * 3 2 1 37 37 H 1.08000 * 120.03480 * 0.02562 * 10 9 8 38 38 H 1.08005 * 119.95782 * 180.27463 * 11 10 9 39 39 H 0.96998 * 120.00053 * 33.83270 * 13 12 11 40 40 H 1.07991 * 119.82334 * 0.02562 * 17 16 14 41 41 H 1.07995 * 119.79411 * 180.26392 * 18 17 16 42 42 H 1.07998 * 119.98119 * 179.74158 * 19 18 17 43 43 H 0.97001 * 119.99892 * 180.02562 * 24 23 21 44 44 H 1.07994 * 120.20676 * 359.97438 * 29 16 14 45 45 H 1.07994 * 119.95972 * 180.02562 * 30 12 11 46 46 H 1.08004 * 120.03617 * 180.02562 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1875 1.1822 0.0000 4 6 3.5958 1.1573 -0.0055 5 8 4.2361 2.1955 -0.0110 6 7 4.2230 -0.0385 0.0004 7 1 5.1922 -0.0800 0.0004 8 6 3.4884 -1.1875 0.0008 9 6 4.1803 -2.4903 0.0012 10 6 5.5772 -2.5417 -0.0042 11 6 6.2196 -3.7594 0.0019 12 6 5.4800 -4.9380 0.0014 13 7 6.1339 -6.1693 0.0017 14 6 5.5940 -7.2192 -0.6486 15 8 4.5869 -7.0702 -1.3125 16 6 6.2269 -8.5520 -0.5543 17 6 7.3898 -8.7228 0.2053 18 6 7.9845 -9.9679 0.3026 19 6 7.4455 -11.0516 -0.3553 20 6 6.2796 -10.8979 -1.1288 21 6 5.7240 -12.0085 -1.8059 22 1 6.3601 -12.8231 -2.1197 23 6 4.3504 -12.0519 -2.0692 24 7 3.5487 -11.1850 -1.5059 25 14 3.6614 -13.3476 -3.2251 26 1 4.7676 -14.2018 -3.7269 27 1 2.6785 -14.1888 -2.4961 28 1 2.9903 -12.6824 -4.3706 29 6 5.6709 -9.6351 -1.2252 30 6 4.0894 -4.8905 0.0010 31 6 3.4405 -3.6763 0.0006 32 7 2.1709 -1.1536 0.0003 33 1 -0.3634 0.0001 -1.0277 34 1 -0.3634 -0.8900 0.5138 35 1 -0.3633 0.8899 0.5139 36 1 1.6552 2.1220 -0.0004 37 1 6.1518 -1.6273 -0.0083 38 1 7.2988 -3.7998 0.0022 39 1 6.9773 -6.2704 0.4700 40 1 7.8225 -7.8791 0.7220 41 1 8.8793 -10.0904 0.8947 42 1 7.9179 -12.0197 -0.2779 43 1 2.5964 -11.2153 -1.6881 44 1 4.7761 -9.5070 -1.8162 45 1 3.5185 -5.8072 0.0010 46 1 2.3610 -3.6403 0.0007 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069485427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:03 Heat of formation + Delta-G solvation = 13.000283 kcal Electronic energy + Delta-G solvation = -31329.917417 eV Core-core repulsion = 26956.201865 eV Total energy + Delta-G solvation = -4373.715553 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.137 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.95204 -40.47191 -38.79149 -37.88413 -37.17415 -35.58551 -34.55887 -33.81288 -32.22961 -31.24094 -30.65590 -29.64282 -29.42736 -28.65213 -25.61455 -25.04176 -23.65575 -23.06985 -22.24940 -21.54269 -21.04700 -19.79038 -19.20918 -18.41147 -18.06075 -17.57463 -17.17287 -16.23128 -16.18375 -15.53597 -15.32694 -15.15399 -14.85740 -14.63780 -14.50735 -14.25023 -14.03387 -14.01207 -13.62785 -13.46526 -13.33231 -13.27787 -12.90908 -12.78249 -12.69764 -12.55875 -12.40388 -11.78971 -11.50094 -11.28814 -11.21090 -10.95052 -10.88248 -10.61299 -10.52374 -10.45038 -10.33652 -10.18041 -9.85789 -9.41909 -9.38505 -9.18505 -8.90767 -8.09530 -7.80132 -7.64788 -6.87735 -4.56532 -0.13701 1.02813 1.17273 1.69426 2.00166 2.29805 2.67237 3.01559 3.02907 3.06325 3.14601 3.23173 3.42367 3.50613 3.74560 3.83829 4.08704 4.39249 4.46321 4.51239 4.64770 4.79262 5.03139 5.04937 5.13892 5.20944 5.24501 5.37890 5.42706 5.45941 5.52874 5.74513 5.77535 5.79708 5.88439 6.07777 6.10480 6.18100 6.22311 6.25031 6.37621 6.55266 6.76340 6.84199 6.85989 7.08101 7.20143 7.43113 7.48040 7.53051 7.55985 7.68118 7.83020 8.01600 8.35590 8.48509 8.67079 8.69383 10.05950 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.014627 B = 0.001721 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.852895 B =16262.820446 C =17891.793989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.193 3.807 3 C -0.314 4.314 4 C 0.527 3.473 5 O -0.548 6.548 6 N -0.633 5.633 7 H 0.416 0.584 8 C 0.464 3.536 9 C -0.120 4.120 10 C -0.064 4.064 11 C -0.160 4.160 12 C 0.206 3.794 13 N -0.679 5.679 14 C 0.566 3.434 15 O -0.516 6.516 16 C -0.135 4.135 17 C -0.216 4.216 18 C -0.098 4.098 19 C -0.204 4.204 20 C 0.097 3.903 21 C -0.457 4.457 22 H 0.082 0.918 23 C 0.070 3.930 24 N -0.790 5.790 25 Si 0.914 3.086 26 H -0.260 1.260 27 H -0.273 1.273 28 H -0.271 1.271 29 C -0.081 4.081 30 C -0.135 4.135 31 C -0.020 4.020 32 N -0.536 5.536 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.153 0.847 37 H 0.125 0.875 38 H 0.136 0.864 39 H 0.414 0.586 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.285 0.715 44 H 0.139 0.861 45 H 0.149 0.851 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.145 15.854 4.385 16.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.071 3.929 3 C -0.338 4.338 4 C 0.327 3.673 5 O -0.427 6.427 6 N -0.274 5.274 7 H 0.256 0.744 8 C 0.204 3.796 9 C -0.124 4.124 10 C -0.084 4.084 11 C -0.180 4.180 12 C 0.108 3.892 13 N -0.324 5.324 14 C 0.358 3.642 15 O -0.391 6.391 16 C -0.138 4.138 17 C -0.236 4.236 18 C -0.116 4.116 19 C -0.224 4.224 20 C 0.094 3.906 21 C -0.486 4.486 22 H 0.100 0.900 23 C -0.148 4.148 24 N -0.415 5.415 25 Si 0.738 3.262 26 H -0.184 1.184 27 H -0.198 1.198 28 H -0.196 1.196 29 C -0.101 4.101 30 C -0.155 4.155 31 C -0.041 4.041 32 N -0.259 5.259 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.171 0.829 37 H 0.143 0.857 38 H 0.154 0.846 39 H 0.252 0.748 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.096 0.904 44 H 0.157 0.843 45 H 0.166 0.834 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.488 16.057 3.915 16.713 hybrid contribution 1.015 0.154 -0.163 1.040 sum -1.473 16.211 3.752 16.705 Atomic orbital electron populations 1.20817 0.87753 1.04179 1.03860 1.21200 0.97551 0.87547 0.86568 1.22619 0.92670 1.00789 1.17740 1.17177 0.89673 0.82249 0.78211 1.90982 1.68448 1.30467 1.52807 1.45048 1.12964 1.07435 1.61911 0.74445 1.21270 0.87406 0.85937 0.84979 1.18052 0.92560 0.89197 1.12587 1.20830 0.92389 0.97793 0.97436 1.20762 1.00260 0.90556 1.06463 1.18137 0.92112 0.85524 0.93436 1.43765 1.26337 1.08428 1.53831 1.19092 0.83572 0.84394 0.77094 1.90742 1.24674 1.84518 1.39211 1.19335 0.98263 0.91279 1.04940 1.20340 0.98806 0.96925 1.07493 1.20452 0.98514 0.93088 0.99532 1.21194 1.01293 0.97245 1.02690 1.17635 0.90775 0.92361 0.89832 1.19647 0.92765 1.04133 1.32039 0.89970 1.25970 0.97289 0.96726 0.94826 1.69741 1.05669 1.32081 1.34010 0.86159 0.79418 0.80447 0.80169 1.18370 1.19834 1.19557 1.21746 1.00185 0.90094 0.98104 1.21338 0.92991 0.99329 1.01886 1.21195 1.00973 0.89595 0.92315 1.68365 1.03922 1.28649 1.25003 0.89431 0.89674 0.90036 0.82898 0.85711 0.84630 0.74791 0.89162 0.88644 0.88364 0.90428 0.84347 0.83367 0.83558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.18 36.00 0.37 -0.31 16 2 C 0.19 1.85 6.77 -82.70 -0.56 1.29 16 3 C -0.31 -3.27 9.68 -39.25 -0.38 -3.65 16 4 C 0.53 6.47 7.75 -15.16 -0.12 6.35 16 5 O -0.55 -8.49 17.97 4.93 0.09 -8.40 16 6 N -0.63 -6.21 5.26 -12.69 -0.07 -6.27 16 7 H 0.42 3.11 6.80 -40.82 -0.28 2.83 16 8 C 0.46 4.77 7.62 -154.60 -1.18 3.59 16 9 C -0.12 -1.22 5.88 -104.96 -0.62 -1.84 16 10 C -0.06 -0.54 9.53 -39.21 -0.37 -0.92 16 11 C -0.16 -1.53 9.94 -39.45 -0.39 -1.93 16 12 C 0.21 2.65 6.27 -83.74 -0.52 2.12 16 13 N -0.68 -9.62 5.26 -10.70 -0.06 -9.68 16 14 C 0.57 10.81 7.50 -12.33 -0.09 10.72 16 15 O -0.52 -11.30 14.02 5.32 0.07 -11.22 16 16 C -0.13 -2.86 5.87 -105.04 -0.62 -3.47 16 17 C -0.22 -4.03 9.55 -38.91 -0.37 -4.40 16 18 C -0.10 -1.89 10.01 -39.72 -0.40 -2.29 16 19 C -0.20 -4.49 9.78 -38.81 -0.38 -4.87 16 20 C 0.10 2.38 5.56 -106.87 -0.59 1.79 16 21 C -0.46 -11.32 9.06 -37.73 -0.34 -11.67 16 22 H 0.08 1.94 7.87 -52.48 -0.41 1.53 16 23 C 0.07 1.68 5.25 -17.35 -0.09 1.59 16 24 N -0.79 -19.76 10.80 55.55 0.60 -19.16 16 25 Si 0.91 17.92 29.57 -169.99 -5.03 12.90 16 26 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 27 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 28 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 29 C -0.08 -1.99 8.21 -38.44 -0.32 -2.31 16 30 C -0.14 -1.83 8.62 -39.45 -0.34 -2.17 16 31 C -0.02 -0.23 9.56 -39.21 -0.37 -0.61 16 32 N -0.54 -5.78 9.34 -7.31 -0.07 -5.85 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.37 8.08 -51.93 -0.42 -0.05 16 36 H 0.15 1.36 8.06 -52.48 -0.42 0.93 16 37 H 0.13 0.68 6.35 -52.49 -0.33 0.34 16 38 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.41 4.73 6.85 -40.82 -0.28 4.46 16 40 H 0.09 1.32 6.39 -52.49 -0.34 0.99 16 41 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16 42 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 43 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 44 H 0.14 3.70 5.74 -52.49 -0.30 3.40 16 45 H 0.15 2.34 6.43 -52.49 -0.34 2.01 16 46 H 0.15 1.57 7.51 -52.48 -0.39 1.18 16 LS Contribution 394.95 15.07 5.95 5.95 Total: -1.00 -30.90 394.95 -10.96 -41.86 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -4.76 Total: 12.85 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -7.69 Total: -12.98 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.41 Total: -40.96 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: 0.16 Total: -19.62 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.90 -10.96 -41.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069485427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.858 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds