Wall clock time and date at job start Tue Mar 31 2020 05:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36416 * 119.92926 * 2 1 4 4 C 1.40844 * 118.91332 * 180.25550 * 3 2 1 5 5 O 1.21982 * 120.65066 * 179.70984 * 4 3 2 6 6 N 1.35034 * 118.69329 * 359.47013 * 4 3 2 7 7 H 0.97004 * 120.12948 * 180.24833 * 6 4 3 8 8 C 1.36371 * 119.72727 * 0.51350 * 6 4 3 9 9 C 1.47511 * 119.43598 * 179.72997 * 8 6 4 10 10 C 1.39792 * 120.07923 * 359.74805 * 9 8 6 11 11 C 1.37671 * 119.91913 * 179.72200 * 10 9 8 12 12 C 1.39142 * 120.08089 * 0.57710 * 11 10 9 13 13 N 1.39416 * 119.92286 * 179.72105 * 12 11 10 14 14 C 1.34782 * 119.99849 * 213.83180 * 13 12 11 15 15 O 1.21550 * 119.99971 * 5.14613 * 14 13 12 16 16 C 1.47843 * 119.99954 * 185.14602 * 14 13 12 17 17 C 1.39943 * 120.02447 * 359.72236 * 16 14 13 18 18 C 1.38328 * 120.35226 * 179.73803 * 17 16 14 19 19 C 1.37762 * 120.41567 * 0.51837 * 18 17 16 20 20 C 1.40753 * 120.03843 * 359.76191 * 19 18 17 21 21 C 1.41443 * 120.17386 * 179.97438 * 20 19 18 22 22 H 1.08007 * 119.99907 * 332.12823 * 21 20 19 23 23 C 1.39932 * 120.00172 * 152.12640 * 21 20 19 24 24 N 1.30827 * 119.99655 * 348.80112 * 23 21 20 25 25 Si 1.86803 * 120.00272 * 168.79843 * 23 21 20 26 26 H 1.48505 * 109.46962 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47101 * 120.00028 * 25 23 21 28 28 H 1.48495 * 109.47110 * 240.00102 * 25 23 21 29 29 C 1.39012 * 120.02569 * 180.02562 * 16 14 13 30 30 C 1.39143 * 120.15133 * 359.69650 * 12 11 10 31 31 C 1.37673 * 120.07788 * 0.02562 * 30 12 11 32 32 N 1.31790 * 121.12107 * 359.75789 * 8 6 4 33 33 H 1.09004 * 109.47320 * 89.99360 * 1 2 3 34 34 H 1.09000 * 109.47680 * 209.99710 * 1 2 3 35 35 H 1.09001 * 109.47143 * 329.99543 * 1 2 3 36 36 H 1.08008 * 120.54106 * 359.97438 * 3 2 1 37 37 H 1.08000 * 120.03480 * 0.02562 * 10 9 8 38 38 H 1.08005 * 119.95782 * 180.27463 * 11 10 9 39 39 H 0.96998 * 120.00053 * 33.83270 * 13 12 11 40 40 H 1.07991 * 119.82334 * 0.02562 * 17 16 14 41 41 H 1.07995 * 119.79411 * 180.26392 * 18 17 16 42 42 H 1.07998 * 119.98119 * 179.74158 * 19 18 17 43 43 H 0.97001 * 119.99892 * 180.02562 * 24 23 21 44 44 H 1.07994 * 120.20676 * 359.97438 * 29 16 14 45 45 H 1.07994 * 119.95972 * 180.02562 * 30 12 11 46 46 H 1.08004 * 120.03617 * 180.02562 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1875 1.1822 0.0000 4 6 3.5958 1.1573 -0.0055 5 8 4.2361 2.1955 -0.0110 6 7 4.2230 -0.0385 0.0004 7 1 5.1922 -0.0800 0.0004 8 6 3.4884 -1.1875 0.0008 9 6 4.1803 -2.4903 0.0012 10 6 5.5772 -2.5417 -0.0042 11 6 6.2196 -3.7594 0.0019 12 6 5.4800 -4.9380 0.0014 13 7 6.1339 -6.1693 0.0017 14 6 5.5940 -7.2192 -0.6486 15 8 4.5869 -7.0702 -1.3125 16 6 6.2269 -8.5520 -0.5543 17 6 7.3898 -8.7228 0.2053 18 6 7.9845 -9.9679 0.3026 19 6 7.4455 -11.0516 -0.3553 20 6 6.2796 -10.8979 -1.1288 21 6 5.7240 -12.0085 -1.8059 22 1 6.3601 -12.8231 -2.1197 23 6 4.3504 -12.0519 -2.0692 24 7 3.5487 -11.1850 -1.5059 25 14 3.6614 -13.3476 -3.2251 26 1 4.7676 -14.2018 -3.7269 27 1 2.6785 -14.1888 -2.4961 28 1 2.9903 -12.6824 -4.3706 29 6 5.6709 -9.6351 -1.2252 30 6 4.0894 -4.8905 0.0010 31 6 3.4405 -3.6763 0.0006 32 7 2.1709 -1.1536 0.0003 33 1 -0.3634 0.0001 -1.0277 34 1 -0.3634 -0.8900 0.5138 35 1 -0.3633 0.8899 0.5139 36 1 1.6552 2.1220 -0.0004 37 1 6.1518 -1.6273 -0.0083 38 1 7.2988 -3.7998 0.0022 39 1 6.9773 -6.2704 0.4700 40 1 7.8225 -7.8791 0.7220 41 1 8.8793 -10.0904 0.8947 42 1 7.9179 -12.0197 -0.2779 43 1 2.5964 -11.2153 -1.6881 44 1 4.7761 -9.5070 -1.8162 45 1 3.5185 -5.8072 0.0010 46 1 2.3610 -3.6403 0.0007 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069485427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:01 Heat of formation + Delta-G solvation = -4.753867 kcal Electronic energy + Delta-G solvation = -31330.687295 eV Core-core repulsion = 26956.201865 eV Total energy + Delta-G solvation = -4374.485430 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.137 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.80786 -41.70438 -39.95969 -38.99259 -38.60615 -36.54658 -35.77657 -35.42699 -33.15013 -32.30755 -31.93686 -31.29949 -30.45693 -29.42940 -27.27902 -26.15690 -24.61623 -24.25812 -23.12737 -22.89043 -22.43640 -21.19919 -20.05426 -19.63440 -19.19853 -18.80867 -18.08416 -17.71694 -17.09752 -17.01758 -16.51542 -16.41391 -16.24417 -15.85509 -15.47278 -15.32308 -15.20438 -14.97461 -14.80496 -14.54293 -14.42562 -14.28774 -14.25818 -14.07330 -13.55619 -13.53139 -13.39768 -13.13986 -12.93811 -12.81079 -12.55178 -12.37985 -12.19272 -11.90163 -11.69818 -11.54208 -11.50119 -11.47761 -11.16714 -11.13337 -10.87590 -10.08645 -9.88048 -9.53995 -9.36757 -9.00430 -8.62266 -6.40744 -0.98828 0.07473 0.32453 0.39238 0.85718 1.00189 1.37641 1.45660 1.46712 1.52495 1.95298 1.99668 2.19670 2.41167 2.63551 2.74727 2.83137 3.34013 3.57830 3.66640 3.71096 3.79593 3.93352 4.08771 4.19363 4.32464 4.35850 4.43789 4.46447 4.57259 4.72560 4.75226 4.81581 4.87858 4.93892 4.96412 5.07363 5.14603 5.20773 5.24511 5.26886 5.31697 5.36519 5.39634 5.47077 5.50094 5.79991 5.84347 5.89410 6.05445 6.26737 6.38958 6.60600 6.66922 6.68124 6.88750 6.92808 7.10409 8.33127 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.014627 B = 0.001721 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.852895 B =16262.820446 C =17891.793989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.195 3.805 3 C -0.323 4.323 4 C 0.519 3.481 5 O -0.587 6.587 6 N -0.620 5.620 7 H 0.427 0.573 8 C 0.462 3.538 9 C -0.113 4.113 10 C -0.052 4.052 11 C -0.141 4.141 12 C 0.179 3.821 13 N -0.657 5.657 14 C 0.566 3.434 15 O -0.556 6.556 16 C -0.143 4.143 17 C -0.189 4.189 18 C -0.098 4.098 19 C -0.209 4.209 20 C 0.063 3.937 21 C -0.496 4.496 22 H 0.082 0.918 23 C 0.027 3.973 24 N -0.832 5.832 25 Si 0.982 3.018 26 H -0.253 1.253 27 H -0.266 1.266 28 H -0.271 1.271 29 C -0.120 4.120 30 C -0.155 4.155 31 C -0.024 4.024 32 N -0.548 5.548 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.172 0.828 39 H 0.429 0.571 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.108 0.892 43 H 0.285 0.715 44 H 0.103 0.897 45 H 0.114 0.886 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.957 17.988 5.602 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.073 3.927 3 C -0.347 4.347 4 C 0.320 3.680 5 O -0.471 6.471 6 N -0.260 5.260 7 H 0.269 0.731 8 C 0.202 3.798 9 C -0.117 4.117 10 C -0.072 4.072 11 C -0.161 4.161 12 C 0.083 3.917 13 N -0.303 5.303 14 C 0.358 3.642 15 O -0.434 6.434 16 C -0.147 4.147 17 C -0.208 4.208 18 C -0.116 4.116 19 C -0.229 4.229 20 C 0.061 3.939 21 C -0.525 4.525 22 H 0.100 0.900 23 C -0.187 4.187 24 N -0.458 5.458 25 Si 0.803 3.197 26 H -0.176 1.176 27 H -0.191 1.191 28 H -0.196 1.196 29 C -0.141 4.141 30 C -0.175 4.175 31 C -0.045 4.045 32 N -0.272 5.272 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.184 0.816 37 H 0.183 0.817 38 H 0.189 0.811 39 H 0.270 0.730 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.126 0.874 43 H 0.096 0.904 44 H 0.121 0.879 45 H 0.132 0.868 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.338 18.201 5.170 18.924 hybrid contribution 0.449 -0.285 -0.400 0.666 sum 0.111 17.915 4.770 18.540 Atomic orbital electron populations 1.20943 0.85399 1.05266 1.04868 1.21658 0.99066 0.86788 0.85206 1.22767 0.92102 1.01756 1.18091 1.17439 0.90324 0.82191 0.77998 1.90962 1.69262 1.31732 1.55101 1.44855 1.13607 1.06638 1.60914 0.73095 1.21260 0.87465 0.85937 0.85123 1.18123 0.93456 0.88415 1.11683 1.21255 0.91697 0.99082 0.95151 1.21081 1.01795 0.89135 1.04076 1.18332 0.91926 0.85855 0.95606 1.43332 1.26427 1.07813 1.52775 1.18839 0.83097 0.84937 0.77373 1.90729 1.26376 1.85119 1.41177 1.19642 0.99008 0.91609 1.04399 1.20929 0.96630 0.98525 1.04760 1.20953 0.99599 0.92234 0.98818 1.21497 1.00278 0.98937 1.02179 1.17967 0.92291 0.92500 0.91151 1.19880 0.93594 1.04821 1.34246 0.89991 1.26795 0.97335 0.98636 0.95914 1.69853 1.05795 1.34206 1.35947 0.85142 0.78736 0.77858 0.77921 1.17603 1.19100 1.19583 1.21530 1.00476 0.91685 1.00361 1.21141 0.93785 0.98795 1.03804 1.21125 1.01141 0.89523 0.92677 1.68411 1.04405 1.29515 1.24881 0.88272 0.89572 0.87978 0.81636 0.81721 0.81086 0.72982 0.83914 0.84138 0.87357 0.90439 0.87871 0.86778 0.83659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.18 71.23 0.73 -0.40 16 2 C 0.19 3.40 6.77 41.94 0.28 3.68 16 3 C -0.32 -6.23 9.68 22.48 0.22 -6.01 16 4 C 0.52 11.98 7.75 84.84 0.66 12.64 16 5 O -0.59 -17.69 17.97 -5.26 -0.09 -17.78 16 6 N -0.62 -10.72 5.26 -312.02 -1.64 -12.36 16 7 H 0.43 5.03 6.80 -92.71 -0.63 4.40 16 8 C 0.46 8.56 7.62 136.35 1.04 9.60 16 9 C -0.11 -2.05 5.88 -20.08 -0.12 -2.17 16 10 C -0.05 -0.67 9.53 22.51 0.21 -0.46 16 11 C -0.14 -2.14 9.94 22.35 0.22 -1.92 16 12 C 0.18 4.32 6.27 38.37 0.24 4.56 16 13 N -0.66 -17.49 5.26 -306.05 -1.61 -19.10 16 14 C 0.57 21.97 7.50 86.78 0.65 22.62 16 15 O -0.56 -25.88 14.02 -3.87 -0.05 -25.94 16 16 C -0.14 -6.12 5.87 -20.14 -0.12 -6.24 16 17 C -0.19 -6.49 9.55 22.70 0.22 -6.27 16 18 C -0.10 -3.50 10.01 22.18 0.22 -3.28 16 19 C -0.21 -9.13 9.78 22.77 0.22 -8.91 16 20 C 0.06 3.26 5.56 -21.32 -0.12 3.14 16 21 C -0.50 -26.04 9.06 23.47 0.21 -25.82 16 22 H 0.08 4.09 7.87 -2.91 -0.02 4.06 16 23 C 0.03 1.36 5.25 85.25 0.45 1.81 16 24 N -0.83 -44.86 10.80 21.82 0.24 -44.63 16 25 Si 0.98 38.67 29.57 68.60 2.03 40.70 16 26 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 27 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 28 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 29 C -0.12 -6.25 8.21 23.01 0.19 -6.06 16 30 C -0.15 -4.30 8.62 22.35 0.19 -4.10 16 31 C -0.02 -0.55 9.56 22.51 0.22 -0.33 16 32 N -0.55 -11.02 9.34 -177.04 -1.65 -12.68 16 33 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 0.66 8.08 -2.39 -0.02 0.64 16 36 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.17 0.87 6.35 -2.91 -0.02 0.85 16 38 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 39 H 0.43 8.16 6.85 -92.71 -0.63 7.53 16 40 H 0.14 3.37 6.39 -2.92 -0.02 3.35 16 41 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 42 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 43 H 0.29 14.19 8.30 -92.71 -0.77 13.42 16 44 H 0.10 6.05 5.74 -2.91 -0.02 6.03 16 45 H 0.11 3.96 6.43 -2.91 -0.02 3.94 16 46 H 0.15 3.22 7.51 -2.91 -0.02 3.19 16 Total: -1.00 -75.16 394.95 2.84 -72.32 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -0.18 Total: 33.38 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 5.81 Total: -13.92 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -4.67 Total: -88.77 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -0.15 Total: -43.72 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -75.16 2.84 -72.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069485427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.563 kcal (2) G-P(sol) polarization free energy of solvation -75.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds