Wall clock time and date at job start Tue Mar 31 2020 06:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35973 * 116.99587 * 179.97438 * 11 10 9 13 13 C 1.38801 * 120.50125 * 0.02562 * 12 11 10 14 14 C 1.38775 * 118.45054 * 179.97438 * 13 12 11 15 15 C 1.38093 * 119.35013 * 359.97438 * 14 13 12 16 16 N 1.31949 * 120.95747 * 359.97438 * 15 14 13 17 17 C 1.32276 * 121.69079 * 359.70619 * 16 15 14 18 18 N 1.39581 * 119.72745 * 180.30946 * 17 16 15 19 19 C 1.34774 * 119.99990 * 0.26696 * 18 17 16 20 20 O 1.21278 * 120.00122 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99823 * 179.97438 * 19 18 17 22 22 O 1.42904 * 109.46972 * 180.02562 * 21 19 18 23 23 C 1.35927 * 116.99828 * 180.02562 * 22 21 19 24 24 C 1.38721 * 120.04173 * 359.72583 * 23 22 21 25 25 C 1.38146 * 119.95162 * 179.79213 * 24 23 22 26 26 C 1.38367 * 120.04550 * 0.46066 * 25 24 23 27 27 Cl 1.73595 * 119.95617 * 179.76597 * 26 25 24 28 28 C 1.38363 * 120.08484 * 359.79415 * 26 25 24 29 29 C 1.38144 * 120.04208 * 359.97081 * 28 26 25 30 30 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 31 31 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 32 32 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 33 33 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 34 34 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 35 35 H 1.08002 * 120.77385 * 359.97438 * 13 12 11 36 36 H 1.07998 * 120.32288 * 179.97438 * 14 13 12 37 37 H 1.08000 * 119.51530 * 179.97438 * 15 14 13 38 38 H 0.97000 * 119.99860 * 180.26729 * 18 17 16 39 39 H 1.08995 * 109.47400 * 300.00387 * 21 19 18 40 40 H 1.09002 * 109.46923 * 60.00258 * 21 19 18 41 41 H 1.08001 * 120.02263 * 0.02562 * 24 23 22 42 42 H 1.08001 * 119.97407 * 180.22686 * 25 24 23 43 43 H 1.07996 * 119.98147 * 179.97438 * 28 26 25 44 44 H 1.08007 * 120.02422 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.2716 -6.0400 -0.0004 13 6 3.6582 -5.9794 -0.0009 14 6 4.3720 -7.1695 -0.0008 15 6 3.6879 -8.3690 0.0003 16 7 2.3687 -8.3981 0.0018 17 6 1.6492 -7.2881 0.0080 18 7 0.2557 -7.3666 0.0159 19 6 -0.3514 -8.5699 0.0225 20 8 0.3131 -9.5844 0.0221 21 6 -1.8560 -8.6546 0.0316 22 8 -2.2558 -10.0266 0.0380 23 6 -3.5912 -10.2802 0.0461 24 6 -4.4975 -9.2300 0.0535 25 6 -5.8543 -9.4898 0.0573 26 6 -6.3094 -10.7965 0.0634 27 17 -8.0148 -11.1203 0.0743 28 6 -5.4069 -11.8453 0.0614 29 6 -4.0494 -11.5895 0.0526 30 1 -0.4850 0.8400 -0.0004 31 1 0.6241 -2.5568 -0.8902 32 1 0.6248 -2.5571 0.8897 33 1 2.8721 -3.6043 -0.8905 34 1 2.8721 -3.6042 0.8895 35 1 4.1698 -5.0282 -0.0013 36 1 5.4519 -7.1576 -0.0016 37 1 4.2407 -9.2968 0.0000 38 1 -0.2758 -6.5552 0.0166 39 1 -2.2425 -8.1597 0.9225 40 1 -2.2529 -8.1643 -0.8574 41 1 -4.1426 -8.2099 0.0524 42 1 -6.5602 -8.6724 0.0594 43 1 -5.7640 -12.8645 0.0665 44 1 -3.3452 -12.4085 0.0515 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069489160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:44 Heat of formation + Delta-G solvation = -43.486826 kcal Electronic energy + Delta-G solvation = -29566.503177 eV Core-core repulsion = 25090.186648 eV Total energy + Delta-G solvation = -4476.316529 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.102 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.10645 -40.57781 -39.29168 -38.02024 -37.71518 -36.50153 -34.95152 -33.53111 -31.86642 -31.64728 -30.91865 -30.35499 -29.45448 -28.10339 -25.49165 -23.99341 -23.30145 -22.92121 -22.46846 -21.16318 -20.42355 -18.88620 -18.57999 -17.71227 -17.24267 -16.84536 -16.77615 -16.38294 -16.19092 -15.79044 -15.71328 -14.97800 -14.89297 -14.84313 -14.61358 -14.32444 -14.00289 -13.98199 -13.83825 -13.38840 -13.21558 -12.91192 -12.61503 -12.45913 -12.22302 -12.10596 -11.99132 -11.72936 -11.15550 -11.10870 -11.10345 -11.05524 -10.83727 -10.72348 -10.35554 -10.11854 -9.83266 -9.56522 -9.45422 -9.31567 -9.14634 -8.57373 -8.55318 -7.77654 -6.22985 -4.27924 0.76964 0.81087 1.10014 1.36597 1.79345 2.11434 2.47417 3.18395 3.18491 3.20091 3.25518 3.28419 3.44473 3.91120 4.08885 4.29601 4.31039 4.37164 4.55088 4.65709 4.66871 4.72865 4.87766 4.90565 5.00213 5.06093 5.14231 5.17735 5.38832 5.46872 5.52564 5.78284 5.78896 5.81974 5.83532 5.96993 6.07718 6.11366 6.22699 6.46901 6.51810 6.83997 7.07881 7.27266 7.46320 7.56755 7.77982 7.90803 8.08971 8.19883 8.77474 9.37432 10.88451 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.007968 B = 0.001724 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3513.018080 B =16233.234117 C =19720.483653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.026 3.974 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.071 3.929 13 C -0.148 4.148 14 C -0.156 4.156 15 C 0.076 3.924 16 N -0.444 5.444 17 C 0.327 3.673 18 N -0.648 5.648 19 C 0.506 3.494 20 O -0.456 6.456 21 C 0.041 3.959 22 O -0.284 6.284 23 C 0.138 3.862 24 C -0.199 4.199 25 C -0.067 4.067 26 C -0.075 4.075 27 Cl -0.073 7.073 28 C -0.070 4.070 29 C -0.136 4.136 30 H 0.264 0.736 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.146 0.854 36 H 0.136 0.864 37 H 0.158 0.842 38 H 0.426 0.574 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.095 -20.818 0.107 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.008 4.008 11 O -0.229 6.229 12 C 0.019 3.981 13 C -0.174 4.174 14 C -0.177 4.177 15 C -0.081 4.081 16 N -0.159 5.159 17 C 0.095 3.905 18 N -0.298 5.298 19 C 0.290 3.710 20 O -0.323 6.323 21 C -0.038 4.038 22 O -0.196 6.196 23 C 0.092 3.908 24 C -0.218 4.218 25 C -0.086 4.086 26 C -0.102 4.102 27 Cl -0.045 7.045 28 C -0.088 4.088 29 C -0.155 4.155 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.175 0.825 38 H 0.264 0.736 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.158 0.842 42 H 0.156 0.844 43 H 0.158 0.842 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.477 -22.412 0.106 23.626 hybrid contribution 0.596 2.614 -0.003 2.681 sum -6.882 -19.798 0.103 20.960 Atomic orbital electron populations 1.69968 1.06099 1.27022 1.49564 1.24983 0.94929 0.99455 0.94762 0.86427 0.79990 0.83152 0.77800 1.19609 1.20785 1.20792 1.20981 0.93121 0.90096 1.52459 0.92261 1.19135 0.94135 0.88927 0.98889 1.23418 0.97282 0.80194 0.99922 1.86095 1.36290 1.12935 1.87535 1.19562 0.91151 0.87021 1.00345 1.21630 0.92197 1.00442 1.03152 1.21924 1.01305 0.92490 1.02029 1.22421 0.88674 0.97990 0.99006 1.67594 1.08035 1.26894 1.13349 1.17688 0.84316 0.87061 1.01460 1.43177 1.04084 1.09842 1.72653 1.20048 0.88957 0.83786 0.78234 1.90849 1.65231 1.33706 1.42512 1.22499 0.93514 0.83149 1.04654 1.86166 1.19787 1.25559 1.88122 1.19125 0.82332 0.94168 0.95182 1.21297 0.93083 0.99234 1.08153 1.20872 0.95362 0.95280 0.97057 1.20807 0.85065 0.94741 1.09562 1.98370 1.13052 1.95852 1.97184 1.20869 0.91342 0.98919 0.97719 1.20415 0.95144 0.94693 1.05263 0.92668 0.95327 0.95340 0.92862 0.92870 0.83606 0.84647 0.82485 0.73627 0.88238 0.88233 0.84154 0.84432 0.84174 0.83919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.98 13.29 55.43 0.74 -24.25 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.53 -13.75 9.11 -34.44 -0.31 -14.07 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.03 0.62 5.34 -27.88 -0.15 0.47 16 10 C 0.07 1.23 4.70 37.16 0.17 1.41 16 11 O -0.32 -5.43 9.39 -19.66 -0.18 -5.62 16 12 C 0.07 1.10 6.72 -38.91 -0.26 0.84 16 13 C -0.15 -2.02 9.14 -39.17 -0.36 -2.38 16 14 C -0.16 -1.83 10.10 -39.44 -0.40 -2.23 16 15 C 0.08 0.98 11.17 -17.55 -0.20 0.78 16 16 N -0.44 -7.11 7.88 -12.22 -0.10 -7.20 16 17 C 0.33 5.09 7.45 -154.43 -1.15 3.94 16 18 N -0.65 -8.52 5.39 -11.29 -0.06 -8.58 16 19 C 0.51 6.70 7.87 -10.99 -0.09 6.62 16 20 O -0.46 -7.90 14.75 -14.35 -0.21 -8.11 16 21 C 0.04 0.37 5.22 36.01 0.19 0.56 16 22 O -0.28 -3.21 9.67 -39.42 -0.38 -3.59 16 23 C 0.14 1.32 6.69 -39.22 -0.26 1.06 16 24 C -0.20 -1.58 9.04 -39.44 -0.36 -1.94 16 25 C -0.07 -0.52 9.82 -39.57 -0.39 -0.91 16 26 C -0.08 -0.62 6.32 -39.49 -0.25 -0.86 16 27 Cl -0.07 -0.58 28.95 -51.86 -1.50 -2.08 16 28 C -0.07 -0.54 9.82 -39.57 -0.39 -0.92 16 29 C -0.14 -1.17 9.99 -39.44 -0.39 -1.57 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.95 7.70 -51.93 -0.40 0.55 16 34 H 0.05 0.95 7.70 -51.93 -0.40 0.55 16 35 H 0.15 1.84 6.44 -52.49 -0.34 1.51 16 36 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.43 4.67 8.04 -40.82 -0.33 4.34 16 39 H 0.10 0.66 7.65 -51.93 -0.40 0.26 16 40 H 0.10 0.66 7.67 -51.93 -0.40 0.26 16 41 H 0.14 0.83 6.30 -52.49 -0.33 0.50 16 42 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 LS Contribution 398.25 15.07 6.00 6.00 Total: -1.00 -33.15 398.25 -10.50 -43.65 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.09 Total: 2.19 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -4.69 Total: -7.66 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.58 Total: -40.04 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.78 Total: -17.33 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.15 -10.50 -43.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069489160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.159 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds