Wall clock time and date at job start Tue Mar 31 2020 06:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35973 * 116.99587 * 179.97438 * 11 10 9 13 13 C 1.38801 * 120.50125 * 0.02562 * 12 11 10 14 14 C 1.38775 * 118.45054 * 179.97438 * 13 12 11 15 15 C 1.38093 * 119.35013 * 359.97438 * 14 13 12 16 16 N 1.31949 * 120.95747 * 359.97438 * 15 14 13 17 17 C 1.32276 * 121.69079 * 359.70619 * 16 15 14 18 18 N 1.39581 * 119.72745 * 180.30946 * 17 16 15 19 19 C 1.34774 * 119.99990 * 0.26696 * 18 17 16 20 20 O 1.21278 * 120.00122 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99823 * 179.97438 * 19 18 17 22 22 O 1.42904 * 109.46972 * 180.02562 * 21 19 18 23 23 C 1.35927 * 116.99828 * 180.02562 * 22 21 19 24 24 C 1.38721 * 120.04173 * 359.72583 * 23 22 21 25 25 C 1.38146 * 119.95162 * 179.79213 * 24 23 22 26 26 C 1.38367 * 120.04550 * 0.46066 * 25 24 23 27 27 Cl 1.73595 * 119.95617 * 179.76597 * 26 25 24 28 28 C 1.38363 * 120.08484 * 359.79415 * 26 25 24 29 29 C 1.38144 * 120.04208 * 359.97081 * 28 26 25 30 30 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 31 31 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 32 32 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 33 33 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 34 34 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 35 35 H 1.08002 * 120.77385 * 359.97438 * 13 12 11 36 36 H 1.07998 * 120.32288 * 179.97438 * 14 13 12 37 37 H 1.08000 * 119.51530 * 179.97438 * 15 14 13 38 38 H 0.97000 * 119.99860 * 180.26729 * 18 17 16 39 39 H 1.08995 * 109.47400 * 300.00387 * 21 19 18 40 40 H 1.09002 * 109.46923 * 60.00258 * 21 19 18 41 41 H 1.08001 * 120.02263 * 0.02562 * 24 23 22 42 42 H 1.08001 * 119.97407 * 180.22686 * 25 24 23 43 43 H 1.07996 * 119.98147 * 179.97438 * 28 26 25 44 44 H 1.08007 * 120.02422 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.2716 -6.0400 -0.0004 13 6 3.6582 -5.9794 -0.0009 14 6 4.3720 -7.1695 -0.0008 15 6 3.6879 -8.3690 0.0003 16 7 2.3687 -8.3981 0.0018 17 6 1.6492 -7.2881 0.0080 18 7 0.2557 -7.3666 0.0159 19 6 -0.3514 -8.5699 0.0225 20 8 0.3131 -9.5844 0.0221 21 6 -1.8560 -8.6546 0.0316 22 8 -2.2558 -10.0266 0.0380 23 6 -3.5912 -10.2802 0.0461 24 6 -4.4975 -9.2300 0.0535 25 6 -5.8543 -9.4898 0.0573 26 6 -6.3094 -10.7965 0.0634 27 17 -8.0148 -11.1203 0.0743 28 6 -5.4069 -11.8453 0.0614 29 6 -4.0494 -11.5895 0.0526 30 1 -0.4850 0.8400 -0.0004 31 1 0.6241 -2.5568 -0.8902 32 1 0.6248 -2.5571 0.8897 33 1 2.8721 -3.6043 -0.8905 34 1 2.8721 -3.6042 0.8895 35 1 4.1698 -5.0282 -0.0013 36 1 5.4519 -7.1576 -0.0016 37 1 4.2407 -9.2968 0.0000 38 1 -0.2758 -6.5552 0.0166 39 1 -2.2425 -8.1597 0.9225 40 1 -2.2529 -8.1643 -0.8574 41 1 -4.1426 -8.2099 0.0524 42 1 -6.5602 -8.6724 0.0594 43 1 -5.7640 -12.8645 0.0665 44 1 -3.3452 -12.4085 0.0515 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069489160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:43 Heat of formation + Delta-G solvation = -61.580643 kcal Electronic energy + Delta-G solvation = -29567.287784 eV Core-core repulsion = 25090.186648 eV Total energy + Delta-G solvation = -4477.101136 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.102 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.13759 -41.36907 -40.30220 -39.12980 -38.56035 -37.13819 -36.04671 -35.43925 -32.95582 -32.47740 -32.21527 -31.28758 -30.51209 -28.95194 -27.16472 -25.14401 -24.22133 -23.84181 -23.25756 -22.65563 -21.49811 -19.74645 -19.54149 -18.99030 -18.24861 -18.02492 -17.59650 -17.51164 -17.25432 -17.07099 -16.71242 -16.42989 -15.91515 -15.90809 -15.54276 -15.24258 -15.14370 -14.83858 -14.56752 -14.35208 -14.24031 -14.16649 -13.95058 -13.62788 -13.30233 -13.22915 -12.88594 -12.78295 -12.77807 -12.43471 -12.35993 -11.93186 -11.77769 -11.74516 -11.70994 -11.61855 -11.42542 -11.33532 -10.60547 -10.42940 -10.23226 -10.16263 -9.21215 -8.89705 -8.25195 -6.36969 0.05221 0.14197 0.19757 0.27736 1.15453 1.28643 1.42602 1.43674 1.48429 1.55802 2.10160 2.38713 2.44631 2.56233 2.85050 3.10498 3.21507 3.58709 3.71323 3.81093 3.85173 3.93118 4.02512 4.03032 4.12522 4.13269 4.31339 4.31771 4.34583 4.45484 4.48204 4.76397 4.89111 4.92000 4.95148 5.11435 5.16446 5.20662 5.21887 5.32348 5.48525 5.52772 5.53149 5.74259 6.06021 6.09468 6.21567 6.32409 6.78216 6.85253 7.18488 7.33033 8.87415 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.007968 B = 0.001724 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3513.018080 B =16233.234117 C =19720.483653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.070 0.930 9 C 0.029 3.971 10 C 0.083 3.917 11 O -0.326 6.326 12 C 0.047 3.953 13 C -0.149 4.149 14 C -0.142 4.142 15 C 0.073 3.927 16 N -0.475 5.475 17 C 0.309 3.691 18 N -0.644 5.644 19 C 0.505 3.495 20 O -0.504 6.504 21 C 0.045 3.955 22 O -0.310 6.310 23 C 0.121 3.879 24 C -0.198 4.198 25 C -0.072 4.072 26 C -0.084 4.084 27 Cl -0.072 7.072 28 C -0.069 4.069 29 C -0.147 4.147 30 H 0.266 0.734 31 H 0.004 0.996 32 H 0.003 0.997 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.158 0.842 36 H 0.176 0.824 37 H 0.185 0.815 38 H 0.433 0.567 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.161 0.839 42 H 0.153 0.847 43 H 0.158 0.842 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.834 -20.513 0.112 21.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.088 0.912 9 C -0.008 4.008 10 C 0.009 3.991 11 O -0.239 6.239 12 C -0.004 4.004 13 C -0.176 4.176 14 C -0.162 4.162 15 C -0.084 4.084 16 N -0.191 5.191 17 C 0.078 3.922 18 N -0.294 5.294 19 C 0.291 3.709 20 O -0.374 6.374 21 C -0.033 4.033 22 O -0.223 6.223 23 C 0.075 3.925 24 C -0.216 4.216 25 C -0.090 4.090 26 C -0.110 4.110 27 Cl -0.044 7.044 28 C -0.088 4.088 29 C -0.166 4.166 30 H 0.074 0.926 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.176 0.824 36 H 0.193 0.807 37 H 0.202 0.798 38 H 0.273 0.727 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.178 0.822 42 H 0.171 0.829 43 H 0.175 0.825 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.227 -22.103 0.112 22.964 hybrid contribution 0.227 2.394 -0.005 2.404 sum -6.001 -19.709 0.107 20.603 Atomic orbital electron populations 1.70093 1.07793 1.28011 1.50812 1.25928 0.95766 1.03334 0.94428 0.85346 0.79212 0.78505 0.77670 1.18191 1.20558 1.20569 1.21437 0.93879 0.91110 1.51683 0.91159 1.18954 0.94541 0.90866 0.96452 1.22966 0.95635 0.79573 1.00933 1.86019 1.36531 1.12941 1.88428 1.19694 0.92086 0.86160 1.02426 1.21925 0.91506 1.01850 1.02299 1.22294 1.03127 0.91045 0.99757 1.23039 0.88036 0.99822 0.97518 1.67658 1.09625 1.27325 1.14446 1.17911 0.85269 0.87064 1.01968 1.43250 1.03671 1.10366 1.72153 1.20758 0.90546 0.82960 0.76647 1.90812 1.66654 1.35087 1.44884 1.22602 0.90457 0.83001 1.07252 1.86118 1.20913 1.26605 1.88683 1.19323 0.81882 0.94962 0.96312 1.21512 0.92901 0.99844 1.07388 1.21111 0.95648 0.95659 0.96603 1.20985 0.85218 0.95191 1.09630 1.98369 1.12943 1.95868 1.97182 1.21053 0.90876 0.99798 0.97069 1.20586 0.95695 0.94787 1.05520 0.92557 0.97804 0.97809 0.91776 0.91784 0.82443 0.80680 0.79788 0.72733 0.85472 0.85471 0.82150 0.82895 0.82483 0.83647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.96 13.29 21.45 0.28 -52.68 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.97 41.15 29.54 68.60 2.03 43.17 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.54 -28.19 9.11 25.60 0.23 -27.95 16 8 H 0.07 3.41 7.74 -2.91 -0.02 3.38 16 9 C 0.03 1.41 5.34 29.85 0.16 1.57 16 10 C 0.08 3.08 4.70 71.98 0.34 3.41 16 11 O -0.33 -11.23 9.39 -93.25 -0.88 -12.11 16 12 C 0.05 1.44 6.72 22.70 0.15 1.60 16 13 C -0.15 -3.79 9.14 22.53 0.21 -3.59 16 14 C -0.14 -2.90 10.10 22.36 0.23 -2.68 16 15 C 0.07 1.74 11.17 84.64 0.95 2.69 16 16 N -0.48 -15.09 7.88 -192.58 -1.52 -16.60 16 17 C 0.31 9.66 7.45 132.98 0.99 10.65 16 18 N -0.64 -17.17 5.39 -308.03 -1.66 -18.83 16 19 C 0.50 13.55 7.87 87.66 0.69 14.24 16 20 O -0.50 -17.99 14.75 16.01 0.24 -17.75 16 21 C 0.04 0.79 5.22 71.24 0.37 1.16 16 22 O -0.31 -7.00 9.67 -73.69 -0.71 -7.71 16 23 C 0.12 2.25 6.69 22.50 0.15 2.40 16 24 C -0.20 -2.90 9.04 22.36 0.20 -2.70 16 25 C -0.07 -1.02 9.82 22.28 0.22 -0.80 16 26 C -0.08 -1.29 6.32 22.33 0.14 -1.15 16 27 Cl -0.07 -1.08 28.95 -2.72 -0.08 -1.15 16 28 C -0.07 -1.02 9.82 22.28 0.22 -0.80 16 29 C -0.15 -2.51 9.99 22.36 0.22 -2.29 16 30 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 31 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.06 2.21 7.70 -2.39 -0.02 2.20 16 34 H 0.06 2.21 7.70 -2.39 -0.02 2.19 16 35 H 0.16 3.57 6.44 -2.91 -0.02 3.55 16 36 H 0.18 2.17 8.06 -2.91 -0.02 2.14 16 37 H 0.19 3.23 8.06 -2.91 -0.02 3.21 16 38 H 0.43 9.65 8.04 -92.71 -0.75 8.90 16 39 H 0.13 1.51 7.65 -2.39 -0.02 1.49 16 40 H 0.13 1.51 7.67 -2.39 -0.02 1.49 16 41 H 0.16 1.57 6.30 -2.91 -0.02 1.55 16 42 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 43 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 44 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -73.41 398.25 3.95 -69.46 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.32 Total: 17.75 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 5.93 Total: -3.55 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -2.89 Total: -88.11 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -1.35 Total: -37.57 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.15 kcal Total: -73.41 3.95 -69.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069489160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.883 kcal (2) G-P(sol) polarization free energy of solvation -73.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds