Wall clock time and date at job start Tue Mar 31 2020 06:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35349 * 126.44247 * 2 1 4 4 C 1.41532 * 105.56174 * 180.09303 * 3 2 1 5 5 C 1.47668 * 126.44593 * 179.87641 * 4 3 2 6 6 O 1.21580 * 119.99663 * 5.83803 * 5 4 3 7 7 N 1.34770 * 120.00060 * 185.83842 * 5 4 3 8 8 C 1.46500 * 120.00215 * 355.67963 * 7 5 4 9 9 C 1.50703 * 109.46681 * 276.54474 * 8 7 5 10 10 H 1.08002 * 120.00113 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00002 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99917 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00249 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47123 * 59.99737 * 13 11 9 15 15 H 1.48496 * 109.47268 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46678 * 299.99938 * 13 11 9 17 17 C 1.46500 * 120.00065 * 175.67328 * 7 5 4 18 18 C 1.50701 * 109.47111 * 90.00190 * 17 7 5 19 19 C 1.38224 * 119.61627 * 94.98031 * 18 17 7 20 20 C 1.38630 * 119.15914 * 179.79056 * 19 18 17 21 21 C 1.38682 * 118.41769 * 0.47219 * 20 19 18 22 22 C 1.38176 * 119.16194 * 359.50530 * 21 20 19 23 23 N 1.31850 * 119.61541 * 275.00090 * 18 17 7 24 24 N 1.31853 * 107.11141 * 359.61310 * 4 3 2 25 25 N 1.28484 * 110.12120 * 0.23946 * 24 4 3 26 26 C 1.40113 * 124.95552 * 180.02562 * 25 24 4 27 27 C 1.38855 * 120.06439 * 144.70892 * 26 25 24 28 28 C 1.38119 * 119.92999 * 179.72220 * 27 26 25 29 29 C 1.38289 * 120.06377 * 0.54874 * 28 27 26 30 30 C 1.38278 * 120.13963 * 359.72298 * 29 28 27 31 31 C 1.38115 * 120.06932 * 359.97438 * 30 29 28 32 32 H 1.08994 * 109.47522 * 270.34376 * 1 2 3 33 33 H 1.09007 * 109.46650 * 30.34462 * 1 2 3 34 34 H 1.08997 * 109.47464 * 150.33930 * 1 2 3 35 35 H 1.08000 * 127.21854 * 359.94388 * 3 2 1 36 36 H 1.09001 * 109.47207 * 36.53756 * 8 7 5 37 37 H 1.08998 * 109.47597 * 156.54918 * 8 7 5 38 38 H 0.97002 * 120.00174 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.47289 * 330.00282 * 17 7 5 40 40 H 1.09001 * 109.47177 * 210.00544 * 17 7 5 41 41 H 1.08003 * 120.42310 * 359.97438 * 19 18 17 42 42 H 1.07998 * 120.79272 * 180.23115 * 20 19 18 43 43 H 1.08002 * 120.41483 * 179.77718 * 21 20 19 44 44 H 1.07998 * 119.61429 * 180.25217 * 22 21 20 45 45 H 1.07995 * 120.03727 * 359.97143 * 27 26 25 46 46 H 1.07998 * 119.97128 * 180.29552 * 28 27 26 47 47 H 1.07999 * 119.92635 * 179.74709 * 29 28 27 48 48 H 1.08006 * 119.96537 * 180.02562 * 30 29 28 49 49 H 1.07999 * 120.03412 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3110 1.0888 0.0000 4 6 3.6333 0.5844 -0.0022 5 6 4.8764 1.3815 -0.0056 6 8 4.8227 2.5915 0.1003 7 7 6.0701 0.7679 -0.1262 8 6 6.1418 -0.6950 -0.1586 9 6 6.1345 -1.2296 1.2504 10 1 6.0813 -0.5478 2.0864 11 6 6.1947 -2.5890 1.4723 12 7 6.2589 -3.4192 0.4544 13 14 6.1849 -3.2517 3.2188 14 1 4.9342 -2.8319 3.9006 15 1 6.2577 -4.7345 3.1861 16 1 7.3557 -2.7153 3.9582 17 6 7.2962 1.5636 -0.2250 18 6 7.8467 1.8116 1.1558 19 6 8.8214 0.9732 1.6633 20 6 9.3243 1.2126 2.9328 21 6 8.8186 2.2855 3.6514 22 6 7.8446 3.0807 3.0783 23 7 7.3927 2.8256 1.8658 24 7 3.5467 -0.7313 0.0051 25 7 2.3138 -1.0930 0.0066 26 6 1.8669 -2.4209 0.0144 27 6 0.7149 -2.7631 0.7101 28 6 0.2736 -4.0719 0.7111 29 6 0.9841 -5.0431 0.0296 30 6 2.1347 -4.7065 -0.6594 31 6 2.5777 -3.3983 -0.6694 32 1 -0.3634 0.0062 1.0276 33 1 -0.3633 0.8870 -0.5192 34 1 -0.3634 -0.8930 -0.5085 35 1 2.0072 2.1252 -0.0008 36 1 5.2824 -1.0890 -0.7011 37 1 7.0598 -1.0029 -0.6592 38 1 6.3009 -4.3757 0.6105 39 1 7.0730 2.5171 -0.7037 40 1 8.0335 1.0229 -0.8184 41 1 9.1887 0.1437 1.0771 42 1 10.0888 0.5765 3.3537 43 1 9.1845 2.4994 4.6448 44 1 7.4486 3.9205 3.6298 45 1 0.1623 -2.0060 1.2464 46 1 -0.6249 -4.3379 1.2481 47 1 0.6393 -6.0666 0.0353 48 1 2.6872 -5.4672 -1.1910 49 1 3.4762 -3.1360 -1.2081 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069533228.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:49 Heat of formation + Delta-G solvation = 133.055953 kcal Electronic energy + Delta-G solvation = -34902.658119 eV Core-core repulsion = 30604.555754 eV Total energy + Delta-G solvation = -4298.102365 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.164 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.35767 -39.77770 -38.93667 -38.26639 -34.99971 -33.34596 -32.64010 -32.52236 -31.90905 -31.16902 -30.68583 -29.01748 -27.56440 -26.74504 -26.10085 -23.78693 -23.06270 -22.80428 -22.60728 -21.82527 -20.90309 -20.11973 -18.19120 -17.48754 -16.67074 -16.30050 -16.18120 -15.99896 -15.73342 -15.41932 -15.27049 -14.99897 -14.58211 -14.42690 -14.19996 -13.81066 -13.51144 -13.29803 -13.21748 -12.99722 -12.89321 -12.83147 -12.67248 -12.50695 -12.32006 -12.12312 -12.06130 -11.65554 -11.40971 -11.31691 -11.26507 -10.98134 -10.88728 -10.73093 -10.16099 -9.68178 -9.62680 -9.47398 -9.37871 -9.15985 -8.89436 -8.87713 -8.53489 -8.46932 -8.27733 -8.02961 -7.59737 -6.00451 -3.98967 1.10038 1.45694 1.56907 1.80620 2.47820 2.59958 2.87856 3.28919 3.32382 3.38495 3.85209 3.90556 4.26102 4.42964 4.51079 4.80117 4.82880 4.88787 4.98432 5.14069 5.20243 5.22053 5.24004 5.26929 5.35894 5.44588 5.49889 5.53674 5.58206 5.64234 5.69275 5.82561 5.90630 5.97840 6.02262 6.05732 6.12261 6.21598 6.25669 6.32459 6.39246 6.52434 6.58873 6.60141 6.65976 6.82166 6.89007 6.93670 7.18268 7.36328 7.54062 7.79282 7.93544 8.29047 8.36025 8.56536 8.59011 9.00605 9.15001 9.62790 11.07489 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.009792 B = 0.003788 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.851663 B = 7390.596253 C = 9099.061220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.010 4.010 3 C -0.177 4.177 4 C -0.008 4.008 5 C 0.602 3.398 6 O -0.545 6.545 7 N -0.583 5.583 8 C 0.231 3.769 9 C -0.499 4.499 10 H 0.048 0.952 11 C 0.075 3.925 12 N -0.889 5.889 13 Si 0.877 3.123 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.279 1.279 17 C 0.172 3.828 18 C 0.125 3.875 19 C -0.134 4.134 20 C -0.084 4.084 21 C -0.182 4.182 22 C 0.087 3.913 23 N -0.458 5.458 24 N -0.179 5.179 25 N -0.247 5.247 26 C 0.142 3.858 27 C -0.128 4.128 28 C -0.112 4.112 29 C -0.123 4.123 30 C -0.102 4.102 31 C -0.080 4.080 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.158 0.842 36 H 0.070 0.930 37 H 0.029 0.971 38 H 0.259 0.741 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.136 0.864 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.147 0.853 45 H 0.130 0.870 46 H 0.128 0.872 47 H 0.124 0.876 48 H 0.131 0.869 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.881 0.730 -1.466 7.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C -0.205 4.205 4 C -0.169 4.169 5 C 0.388 3.612 6 O -0.422 6.422 7 N -0.314 5.314 8 C 0.112 3.888 9 C -0.538 4.538 10 H 0.066 0.934 11 C -0.126 4.126 12 N -0.529 5.529 13 Si 0.706 3.294 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.205 1.205 17 C 0.047 3.953 18 C -0.014 4.014 19 C -0.155 4.155 20 C -0.110 4.110 21 C -0.202 4.202 22 C -0.070 4.070 23 N -0.167 5.167 24 N -0.010 5.010 25 N -0.030 5.030 26 C 0.052 3.948 27 C -0.148 4.148 28 C -0.131 4.131 29 C -0.141 4.141 30 C -0.121 4.121 31 C -0.099 4.099 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.175 0.825 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.154 0.846 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.164 0.836 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.142 0.858 48 H 0.149 0.851 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.907 0.675 -1.842 7.180 hybrid contribution 0.337 -0.610 1.971 2.091 sum -6.570 0.065 0.129 6.571 Atomic orbital electron populations 1.20406 0.87450 1.03483 1.02607 1.21485 0.95021 0.86567 1.09866 1.21408 0.90922 0.98886 1.09270 1.22010 0.94791 0.89975 1.10133 1.16876 0.81925 0.85845 0.76560 1.90733 1.86822 1.13285 1.51391 1.48093 1.03600 1.09785 1.69873 1.19858 0.99050 0.71807 0.98124 1.21168 1.49481 0.91354 0.91775 0.93405 1.24650 0.95427 0.96667 0.95903 1.69882 1.51054 1.02574 1.29367 0.86888 0.78492 0.77693 0.86314 1.20774 1.21318 1.20512 1.20150 0.87044 0.97138 0.90943 1.21645 0.92053 0.90413 0.97329 1.21982 0.97603 0.99356 0.96541 1.21488 0.98825 0.96337 0.94337 1.22028 0.99868 0.97457 1.00885 1.22646 0.93910 0.98572 0.91895 1.67576 1.24230 1.18300 1.06586 1.74693 0.97827 1.13953 1.14560 1.43142 1.03991 1.04257 1.51614 1.17536 0.96012 0.81106 1.00169 1.21054 0.96616 0.97597 0.99534 1.20896 1.00265 0.91967 0.99926 1.21227 0.95638 0.99404 0.97830 1.21087 0.96085 0.95714 0.99198 1.21219 0.99268 0.92031 0.97394 0.90842 0.90037 0.91124 0.82466 0.91300 0.95261 0.93164 0.89280 0.89314 0.84642 0.85488 0.85704 0.83611 0.85193 0.85439 0.85779 0.85109 0.83696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 8.58 36.01 0.31 -0.62 16 2 C -0.01 -0.16 6.75 -81.84 -0.55 -0.72 16 3 C -0.18 -3.34 10.73 -39.36 -0.42 -3.76 16 4 C -0.01 -0.17 6.81 -82.75 -0.56 -0.73 16 5 C 0.60 14.09 7.61 -12.41 -0.09 14.00 16 6 O -0.55 -13.37 16.55 5.29 0.09 -13.28 16 7 N -0.58 -13.07 2.46 -177.61 -0.44 -13.50 16 8 C 0.23 5.60 4.81 -5.19 -0.02 5.58 16 9 C -0.50 -13.19 8.45 -34.44 -0.29 -13.48 16 10 H 0.05 1.39 7.81 -52.49 -0.41 0.98 16 11 C 0.08 2.00 5.46 -17.82 -0.10 1.90 16 12 N -0.89 -23.72 13.29 55.43 0.74 -22.99 16 13 Si 0.88 21.65 29.54 -169.99 -5.02 16.63 16 14 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 C 0.17 3.33 5.72 -5.19 -0.03 3.30 16 18 C 0.12 2.47 6.36 -82.59 -0.53 1.94 16 19 C -0.13 -2.44 9.72 -39.44 -0.38 -2.82 16 20 C -0.08 -1.35 10.18 -39.27 -0.40 -1.75 16 21 C -0.18 -2.79 10.11 -39.44 -0.40 -3.19 16 22 C 0.09 1.49 11.18 -17.55 -0.20 1.30 16 23 N -0.46 -9.31 10.27 -9.48 -0.10 -9.41 16 24 N -0.18 -4.04 7.44 33.42 0.25 -3.80 16 25 N -0.25 -4.79 3.47 -6.85 -0.02 -4.81 16 26 C 0.14 2.48 6.20 -83.61 -0.52 1.96 16 27 C -0.13 -1.80 8.21 -39.40 -0.32 -2.12 16 28 C -0.11 -1.33 10.04 -39.61 -0.40 -1.73 16 29 C -0.12 -1.47 10.04 -39.55 -0.40 -1.87 16 30 C -0.10 -1.45 10.04 -39.61 -0.40 -1.85 16 31 C -0.08 -1.39 9.68 -39.40 -0.38 -1.77 16 32 H 0.07 0.74 7.69 -51.93 -0.40 0.34 16 33 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.07 0.74 6.85 -51.93 -0.36 0.39 16 35 H 0.16 2.64 8.06 -52.49 -0.42 2.22 16 36 H 0.07 1.77 5.34 -51.93 -0.28 1.49 16 37 H 0.03 0.72 7.82 -51.93 -0.41 0.32 16 38 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 39 H 0.09 1.71 7.48 -51.93 -0.39 1.32 16 40 H 0.09 1.48 7.75 -51.93 -0.40 1.08 16 41 H 0.14 2.35 8.06 -52.48 -0.42 1.92 16 42 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 43 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 44 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 45 H 0.13 1.61 6.02 -52.49 -0.32 1.29 16 46 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 47 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 48 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 49 H 0.15 2.86 8.00 -52.49 -0.42 2.44 16 LS Contribution 416.70 15.07 6.28 6.28 Total: -1.00 -33.41 416.70 -10.63 -44.03 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.32 Total: 7.28 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -6.09 Total: -6.43 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.43 Total: -54.51 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.09 Total: -13.28 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.41 -10.63 -44.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069533228.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.090 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds