Wall clock time and date at job start Tue Mar 31 2020 06:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35349 * 126.44247 * 2 1 4 4 C 1.41532 * 105.56174 * 180.09303 * 3 2 1 5 5 C 1.47668 * 126.44593 * 179.87641 * 4 3 2 6 6 O 1.21580 * 119.99663 * 5.83803 * 5 4 3 7 7 N 1.34770 * 120.00060 * 185.83842 * 5 4 3 8 8 C 1.46500 * 120.00215 * 355.67963 * 7 5 4 9 9 C 1.50703 * 109.46681 * 276.54474 * 8 7 5 10 10 H 1.08002 * 120.00113 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00002 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99917 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00249 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47123 * 59.99737 * 13 11 9 15 15 H 1.48496 * 109.47268 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46678 * 299.99938 * 13 11 9 17 17 C 1.46500 * 120.00065 * 175.67328 * 7 5 4 18 18 C 1.50701 * 109.47111 * 90.00190 * 17 7 5 19 19 C 1.38224 * 119.61627 * 94.98031 * 18 17 7 20 20 C 1.38630 * 119.15914 * 179.79056 * 19 18 17 21 21 C 1.38682 * 118.41769 * 0.47219 * 20 19 18 22 22 C 1.38176 * 119.16194 * 359.50530 * 21 20 19 23 23 N 1.31850 * 119.61541 * 275.00090 * 18 17 7 24 24 N 1.31853 * 107.11141 * 359.61310 * 4 3 2 25 25 N 1.28484 * 110.12120 * 0.23946 * 24 4 3 26 26 C 1.40113 * 124.95552 * 180.02562 * 25 24 4 27 27 C 1.38855 * 120.06439 * 144.70892 * 26 25 24 28 28 C 1.38119 * 119.92999 * 179.72220 * 27 26 25 29 29 C 1.38289 * 120.06377 * 0.54874 * 28 27 26 30 30 C 1.38278 * 120.13963 * 359.72298 * 29 28 27 31 31 C 1.38115 * 120.06932 * 359.97438 * 30 29 28 32 32 H 1.08994 * 109.47522 * 270.34376 * 1 2 3 33 33 H 1.09007 * 109.46650 * 30.34462 * 1 2 3 34 34 H 1.08997 * 109.47464 * 150.33930 * 1 2 3 35 35 H 1.08000 * 127.21854 * 359.94388 * 3 2 1 36 36 H 1.09001 * 109.47207 * 36.53756 * 8 7 5 37 37 H 1.08998 * 109.47597 * 156.54918 * 8 7 5 38 38 H 0.97002 * 120.00174 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.47289 * 330.00282 * 17 7 5 40 40 H 1.09001 * 109.47177 * 210.00544 * 17 7 5 41 41 H 1.08003 * 120.42310 * 359.97438 * 19 18 17 42 42 H 1.07998 * 120.79272 * 180.23115 * 20 19 18 43 43 H 1.08002 * 120.41483 * 179.77718 * 21 20 19 44 44 H 1.07998 * 119.61429 * 180.25217 * 22 21 20 45 45 H 1.07995 * 120.03727 * 359.97143 * 27 26 25 46 46 H 1.07998 * 119.97128 * 180.29552 * 28 27 26 47 47 H 1.07999 * 119.92635 * 179.74709 * 29 28 27 48 48 H 1.08006 * 119.96537 * 180.02562 * 30 29 28 49 49 H 1.07999 * 120.03412 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3110 1.0888 0.0000 4 6 3.6333 0.5844 -0.0022 5 6 4.8764 1.3815 -0.0056 6 8 4.8227 2.5915 0.1003 7 7 6.0701 0.7679 -0.1262 8 6 6.1418 -0.6950 -0.1586 9 6 6.1345 -1.2296 1.2504 10 1 6.0813 -0.5478 2.0864 11 6 6.1947 -2.5890 1.4723 12 7 6.2589 -3.4192 0.4544 13 14 6.1849 -3.2517 3.2188 14 1 4.9342 -2.8319 3.9006 15 1 6.2577 -4.7345 3.1861 16 1 7.3557 -2.7153 3.9582 17 6 7.2962 1.5636 -0.2250 18 6 7.8467 1.8116 1.1558 19 6 8.8214 0.9732 1.6633 20 6 9.3243 1.2126 2.9328 21 6 8.8186 2.2855 3.6514 22 6 7.8446 3.0807 3.0783 23 7 7.3927 2.8256 1.8658 24 7 3.5467 -0.7313 0.0051 25 7 2.3138 -1.0930 0.0066 26 6 1.8669 -2.4209 0.0144 27 6 0.7149 -2.7631 0.7101 28 6 0.2736 -4.0719 0.7111 29 6 0.9841 -5.0431 0.0296 30 6 2.1347 -4.7065 -0.6594 31 6 2.5777 -3.3983 -0.6694 32 1 -0.3634 0.0062 1.0276 33 1 -0.3633 0.8870 -0.5192 34 1 -0.3634 -0.8930 -0.5085 35 1 2.0072 2.1252 -0.0008 36 1 5.2824 -1.0890 -0.7011 37 1 7.0598 -1.0029 -0.6592 38 1 6.3009 -4.3757 0.6105 39 1 7.0730 2.5171 -0.7037 40 1 8.0335 1.0229 -0.8184 41 1 9.1887 0.1437 1.0771 42 1 10.0888 0.5765 3.3537 43 1 9.1845 2.4994 4.6448 44 1 7.4486 3.9205 3.6298 45 1 0.1623 -2.0060 1.2464 46 1 -0.6249 -4.3379 1.2481 47 1 0.6393 -6.0666 0.0353 48 1 2.6872 -5.4672 -1.1910 49 1 3.4762 -3.1360 -1.2081 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069533228.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:48 Heat of formation + Delta-G solvation = 115.212751 kcal Electronic energy + Delta-G solvation = -34903.431858 eV Core-core repulsion = 30604.555754 eV Total energy + Delta-G solvation = -4298.876104 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.164 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -43.80309 -41.22781 -40.26722 -39.74287 -36.81404 -34.72847 -34.47924 -33.80430 -33.30808 -32.64465 -31.79913 -30.30991 -29.36131 -28.09936 -27.62583 -25.38589 -24.61117 -24.21271 -23.94003 -23.16281 -22.30872 -21.45726 -19.82879 -18.82268 -18.58819 -17.74318 -17.63892 -17.27232 -17.12734 -16.94900 -16.84567 -16.47819 -16.28996 -15.79877 -15.49291 -15.31516 -14.85287 -14.61520 -14.45099 -14.44192 -14.18722 -14.08272 -13.93297 -13.90874 -13.85932 -13.56411 -13.52769 -13.19945 -13.06263 -12.82041 -12.66745 -12.57455 -12.43044 -12.13915 -12.03054 -11.69317 -11.22708 -11.04915 -10.83794 -10.71643 -10.42368 -10.31852 -9.97138 -9.88830 -9.82779 -9.49776 -9.24485 -8.07059 -6.10147 -0.08860 0.21098 0.36846 0.46788 0.88444 1.25566 1.29198 1.31461 1.37772 1.55805 2.26902 2.44529 2.54423 2.75380 3.05265 3.25329 3.45694 3.51664 3.72610 3.81756 3.91172 3.95345 4.03677 4.08546 4.21680 4.23148 4.30445 4.38563 4.43250 4.49655 4.55273 4.59974 4.65373 4.68738 4.72958 4.79734 4.90789 4.95231 5.01717 5.03266 5.06117 5.26524 5.27756 5.32855 5.37167 5.40299 5.50108 5.53436 5.78746 5.85349 5.86520 5.91205 6.20810 6.25733 6.52401 6.86085 7.08488 7.19748 7.36157 7.53157 8.99616 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.009792 B = 0.003788 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.851663 B = 7390.596253 C = 9099.061220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.009 3.991 3 C -0.198 4.198 4 C -0.043 4.043 5 C 0.593 3.407 6 O -0.567 6.567 7 N -0.584 5.584 8 C 0.250 3.750 9 C -0.492 4.492 10 H 0.018 0.982 11 C 0.045 3.955 12 N -0.900 5.900 13 Si 0.920 3.080 14 H -0.296 1.296 15 H -0.275 1.275 16 H -0.274 1.274 17 C 0.167 3.833 18 C 0.102 3.898 19 C -0.149 4.149 20 C -0.087 4.087 21 C -0.169 4.169 22 C 0.072 3.928 23 N -0.496 5.496 24 N -0.218 5.218 25 N -0.249 5.249 26 C 0.104 3.896 27 C -0.126 4.126 28 C -0.100 4.100 29 C -0.109 4.109 30 C -0.110 4.110 31 C -0.108 4.108 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.171 0.829 36 H 0.056 0.944 37 H 0.020 0.980 38 H 0.261 0.739 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.135 0.865 42 H 0.158 0.842 43 H 0.167 0.833 44 H 0.171 0.829 45 H 0.150 0.850 46 H 0.172 0.828 47 H 0.164 0.836 48 H 0.142 0.858 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.036 -0.960 0.706 9.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C -0.225 4.225 4 C -0.203 4.203 5 C 0.381 3.619 6 O -0.446 6.446 7 N -0.313 5.313 8 C 0.130 3.870 9 C -0.531 4.531 10 H 0.037 0.963 11 C -0.155 4.155 12 N -0.540 5.540 13 Si 0.748 3.252 14 H -0.223 1.223 15 H -0.200 1.200 16 H -0.199 1.199 17 C 0.044 3.956 18 C -0.037 4.037 19 C -0.169 4.169 20 C -0.113 4.113 21 C -0.189 4.189 22 C -0.085 4.085 23 N -0.206 5.206 24 N -0.051 5.051 25 N -0.032 5.032 26 C 0.015 3.985 27 C -0.146 4.146 28 C -0.118 4.118 29 C -0.127 4.127 30 C -0.129 4.129 31 C -0.128 4.128 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.189 0.811 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.126 0.874 41 H 0.153 0.847 42 H 0.175 0.825 43 H 0.184 0.816 44 H 0.188 0.812 45 H 0.167 0.833 46 H 0.190 0.810 47 H 0.182 0.818 48 H 0.160 0.840 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.033 -1.029 0.316 9.097 hybrid contribution 0.925 -0.158 1.321 1.621 sum -8.108 -1.187 1.637 8.356 Atomic orbital electron populations 1.20641 0.83097 1.05310 1.04595 1.22278 0.97328 0.84973 1.06588 1.21657 0.89869 1.00291 1.10707 1.22125 0.95618 0.90499 1.12067 1.17191 0.82636 0.85892 0.76195 1.90684 1.87256 1.13963 1.52664 1.48079 1.04519 1.09216 1.69528 1.19481 0.97788 0.72900 0.96858 1.20969 1.49605 0.91045 0.91529 0.96322 1.25074 0.95389 0.96777 0.98286 1.69945 1.51148 1.02665 1.30276 0.86221 0.77757 0.77807 0.83374 1.22299 1.20032 1.19927 1.20322 0.86470 0.96778 0.92042 1.21571 0.93279 0.91444 0.97381 1.22091 0.97752 0.99256 0.97841 1.21914 0.99068 0.96873 0.93440 1.22448 0.98268 0.95993 1.02193 1.23193 0.94411 0.99701 0.91210 1.67514 1.25561 1.19155 1.08321 1.74554 1.00188 1.14127 1.16207 1.43409 1.03497 1.05740 1.50600 1.17971 0.97870 0.80245 1.02428 1.21379 0.95225 0.99348 0.98679 1.21446 1.01042 0.90581 0.98698 1.21698 0.93930 1.01450 0.95656 1.21316 0.97328 0.94445 0.99788 1.21071 0.98837 0.93983 0.98947 0.88507 0.87756 0.89732 0.81111 0.92665 0.96195 0.92995 0.89774 0.87358 0.84669 0.82481 0.81571 0.81180 0.83254 0.81020 0.81830 0.83998 0.87785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 8.58 71.24 0.61 -0.97 16 2 C 0.01 0.30 6.75 41.27 0.28 0.58 16 3 C -0.20 -7.71 10.73 22.41 0.24 -7.47 16 4 C -0.04 -2.04 6.81 42.45 0.29 -1.75 16 5 C 0.59 29.76 7.61 86.74 0.66 30.42 16 6 O -0.57 -29.52 16.55 -3.97 -0.07 -29.59 16 7 N -0.58 -28.02 2.46 -834.12 -2.05 -30.07 16 8 C 0.25 12.92 4.81 85.63 0.41 13.33 16 9 C -0.49 -27.20 8.45 25.60 0.22 -26.99 16 10 H 0.02 1.12 7.81 -2.91 -0.02 1.10 16 11 C 0.05 2.46 5.46 84.66 0.46 2.92 16 12 N -0.90 -49.33 13.29 21.45 0.28 -49.05 16 13 Si 0.92 44.61 29.54 68.60 2.03 46.63 16 14 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 17 C 0.17 6.95 5.72 85.63 0.49 7.44 16 18 C 0.10 4.19 6.36 42.55 0.27 4.46 16 19 C -0.15 -5.51 9.72 22.36 0.22 -5.29 16 20 C -0.09 -2.70 10.18 22.47 0.23 -2.47 16 21 C -0.17 -4.85 10.11 22.36 0.23 -4.62 16 22 C 0.07 2.44 11.18 84.67 0.95 3.38 16 23 N -0.50 -20.82 10.27 -183.89 -1.89 -22.71 16 24 N -0.22 -10.48 7.44 -48.17 -0.36 -10.83 16 25 N -0.25 -9.96 3.47 -175.59 -0.61 -10.57 16 26 C 0.10 3.65 6.20 38.11 0.24 3.89 16 27 C -0.13 -3.23 8.21 22.39 0.18 -3.04 16 28 C -0.10 -1.92 10.04 22.25 0.22 -1.69 16 29 C -0.11 -2.22 10.04 22.29 0.22 -1.99 16 30 C -0.11 -3.04 10.04 22.25 0.22 -2.81 16 31 C -0.11 -3.94 9.68 22.39 0.22 -3.72 16 32 H 0.10 1.57 7.69 -2.39 -0.02 1.55 16 33 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.08 1.50 6.85 -2.39 -0.02 1.49 16 35 H 0.17 5.91 8.06 -2.91 -0.02 5.88 16 36 H 0.06 3.07 5.34 -2.39 -0.01 3.06 16 37 H 0.02 1.05 7.82 -2.39 -0.02 1.03 16 38 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 39 H 0.08 3.50 7.48 -2.39 -0.02 3.48 16 40 H 0.11 3.89 7.75 -2.39 -0.02 3.87 16 41 H 0.14 4.85 8.06 -2.91 -0.02 4.82 16 42 H 0.16 3.83 8.06 -2.91 -0.02 3.80 16 43 H 0.17 3.33 8.06 -2.91 -0.02 3.30 16 44 H 0.17 4.66 8.06 -2.91 -0.02 4.63 16 45 H 0.15 3.14 6.02 -2.91 -0.02 3.12 16 46 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 47 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 48 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 49 H 0.10 4.54 8.00 -2.91 -0.02 4.52 16 Total: -1.00 -78.75 416.70 5.17 -73.58 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 0.98 Total: 28.99 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 6.86 Total: 3.61 kcal Atomic # 7 Polarization: -118.61 SS G_CDS: -4.62 Total: -123.23 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.07 Total: -29.59 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -78.75 5.17 -73.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069533228.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.793 kcal (2) G-P(sol) polarization free energy of solvation -78.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds