Wall clock time and date at job start Tue Mar 31 2020 06:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99950 * 2 1 4 4 H 1.48499 * 109.46960 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47578 * 300.00303 * 3 2 1 6 6 H 1.48498 * 109.47098 * 60.00671 * 3 2 1 7 7 C 1.37882 * 119.99696 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99916 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99977 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46817 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00065 * 273.51478 * 10 9 7 12 12 C 1.53000 * 109.47015 * 270.00089 * 11 10 9 13 13 N 1.46902 * 109.47056 * 179.97438 * 12 11 10 14 14 C 1.47007 * 111.00112 * 293.63237 * 13 12 11 15 15 C 1.53100 * 109.26201 * 177.60874 * 14 13 12 16 16 O 1.43017 * 109.25722 * 56.84757 * 15 14 13 17 17 C 1.43013 * 113.74020 * 301.33508 * 16 15 14 18 18 C 1.47015 * 110.99900 * 170.00105 * 13 12 11 19 19 C 1.34780 * 120.00275 * 93.51278 * 10 9 7 20 20 O 1.21274 * 120.00074 * 185.76358 * 19 10 9 21 21 C 1.50704 * 119.99486 * 5.76034 * 19 10 9 22 22 H 1.08998 * 110.99862 * 22.24241 * 21 19 10 23 23 C 1.54133 * 111.09070 * 146.38548 * 21 19 10 24 24 C 1.50873 * 110.47747 * 89.84217 * 23 21 19 25 25 C 1.39759 * 126.70154 * 200.20984 * 24 23 21 26 26 C 1.37696 * 121.01385 * 180.26821 * 25 24 23 27 27 C 1.38321 * 120.54334 * 359.97438 * 26 25 24 28 28 C 1.38029 * 119.28808 * 359.87744 * 27 26 25 29 29 C 1.38704 * 115.49175 * 20.22159 * 24 23 21 30 30 S 1.77434 * 108.24352 * 359.66455 * 29 24 23 31 31 H 0.97001 * 120.00319 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.46947 * 60.00589 * 9 7 2 33 33 H 1.08993 * 109.47217 * 299.99897 * 9 7 2 34 34 H 1.08998 * 109.47547 * 30.00032 * 11 10 9 35 35 H 1.08997 * 109.47495 * 150.00073 * 11 10 9 36 36 H 1.08999 * 109.47349 * 299.99691 * 12 11 10 37 37 H 1.08997 * 109.47002 * 59.99682 * 12 11 10 38 38 H 1.09006 * 109.51133 * 297.54514 * 14 13 12 39 39 H 1.09000 * 109.50610 * 57.67624 * 14 13 12 40 40 H 1.09006 * 109.50283 * 296.91512 * 15 14 13 41 41 H 1.08993 * 109.54264 * 176.80641 * 15 14 13 42 42 H 1.09002 * 109.50192 * 298.73497 * 17 16 15 43 43 H 1.08994 * 109.54121 * 178.62466 * 17 16 15 44 44 H 1.09003 * 109.50553 * 302.32599 * 18 13 12 45 45 H 1.08996 * 109.50638 * 62.41425 * 18 13 12 46 46 H 1.09005 * 109.27155 * 210.08683 * 23 21 19 47 47 H 1.08993 * 109.27912 * 329.58999 * 23 21 19 48 48 H 1.08003 * 119.51860 * 0.22925 * 25 24 23 49 49 H 1.08000 * 119.73059 * 180.02562 * 26 25 24 50 50 H 1.07998 * 120.35848 * 179.89545 * 27 26 25 51 51 H 1.08004 * 119.91747 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.7380 -4.1189 -1.2669 12 6 1.8299 -5.2307 -1.7961 13 7 2.3662 -5.7380 -3.0662 14 6 2.2972 -4.7102 -4.1151 15 6 2.9191 -5.2593 -5.4019 16 8 2.2423 -6.4620 -5.7770 17 6 2.2900 -7.4849 -4.7787 18 6 1.6617 -6.9583 -3.4857 19 6 2.5865 -4.1714 1.1645 20 8 3.4514 -5.0214 1.1735 21 6 1.9405 -3.7398 2.4558 22 1 0.9624 -3.2946 2.2735 23 6 1.8385 -4.9169 3.4456 24 6 3.0752 -4.9913 4.3065 25 6 3.5308 -6.1035 5.0198 26 6 4.6789 -6.0390 5.7773 27 6 5.4094 -4.8665 5.8480 28 6 4.9770 -3.7583 5.1480 29 6 3.8205 -3.8240 4.3829 30 16 3.0256 -2.5911 3.3846 31 1 -0.4851 0.8400 0.0004 32 1 0.6240 -2.5567 -0.8903 33 1 0.6246 -2.5571 0.8896 34 1 2.7805 -3.3077 -1.9936 35 1 3.7406 -4.5148 -1.1053 36 1 1.7875 -6.0421 -1.0695 37 1 0.8273 -4.8349 -1.9577 38 1 1.2556 -4.4462 -4.2982 39 1 2.8467 -3.8252 -3.7942 40 1 3.9747 -5.4730 -5.2335 41 1 2.8196 -4.5220 -6.1984 42 1 3.3273 -7.7633 -4.5923 43 1 1.7353 -8.3574 -5.1238 44 1 1.7473 -7.7144 -2.7052 45 1 0.6099 -6.7304 -3.6579 46 1 0.9649 -4.7770 4.0823 47 1 1.7318 -5.8475 2.8882 48 1 2.9737 -7.0278 4.9771 49 1 5.0123 -6.9112 6.3199 50 1 6.3085 -4.8187 6.4444 51 1 5.5398 -2.8377 5.1957 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069625725.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:01 Heat of formation + Delta-G solvation = -36.237628 kcal Electronic energy + Delta-G solvation = -32576.504565 eV Core-core repulsion = 28374.212280 eV Total energy + Delta-G solvation = -4202.292285 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.81893 -39.43901 -38.76201 -36.24168 -34.91317 -34.17906 -32.65283 -31.28071 -30.71662 -30.36735 -29.09975 -27.32855 -26.21073 -24.43464 -24.05580 -23.06879 -22.83820 -21.90524 -20.97950 -20.34186 -18.53476 -17.60454 -16.98374 -16.62655 -16.57787 -16.17277 -15.71500 -15.38195 -15.22205 -15.09416 -14.95911 -14.85458 -14.54548 -14.47061 -14.03406 -13.75014 -13.63242 -13.20416 -13.09982 -12.70748 -12.58964 -12.40134 -12.32460 -12.10661 -12.08468 -11.88072 -11.48527 -11.43674 -11.34952 -11.26533 -10.97182 -10.91205 -10.81959 -10.71263 -10.42505 -10.17173 -9.96724 -9.83887 -9.69785 -9.45445 -9.28023 -8.64407 -8.60381 -8.39576 -7.85846 -7.06540 -6.23826 -4.30199 1.29356 1.44005 1.74231 2.48122 3.20693 3.29796 3.34361 3.38087 3.55331 3.77433 3.79157 4.02865 4.31355 4.57779 4.80509 4.81443 4.93580 4.97403 5.02705 5.04875 5.08294 5.10265 5.10690 5.22299 5.37026 5.41332 5.48511 5.50279 5.51598 5.58207 5.59986 5.67779 5.72188 5.78612 5.79110 5.89543 5.92089 5.93702 6.09733 6.19831 6.39064 6.42253 6.43594 6.56274 6.58465 6.94511 6.97811 6.99834 7.03020 7.06995 7.38684 7.72066 7.96407 8.15568 8.70125 8.85401 9.38230 10.83201 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.006577 B = 0.003399 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4256.019534 B = 8235.150814 C =11618.444254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.068 3.932 3 Si 0.894 3.106 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.532 4.532 8 H 0.064 0.936 9 C 0.234 3.766 10 N -0.587 5.587 11 C 0.126 3.874 12 C 0.045 3.955 13 N -0.533 5.533 14 C 0.012 3.988 15 C 0.065 3.935 16 O -0.389 6.389 17 C 0.065 3.935 18 C 0.019 3.981 19 C 0.531 3.469 20 O -0.553 6.553 21 C -0.085 4.085 22 H 0.147 0.853 23 C -0.069 4.069 24 C -0.086 4.086 25 C -0.095 4.095 26 C -0.126 4.126 27 C -0.110 4.110 28 C -0.089 4.089 29 C -0.088 4.088 30 S -0.066 6.066 31 H 0.265 0.735 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.045 0.955 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.041 0.959 46 H 0.097 0.903 47 H 0.092 0.908 48 H 0.119 0.881 49 H 0.122 0.878 50 H 0.126 0.874 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.251 -12.551 1.902 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.571 4.571 8 H 0.083 0.917 9 C 0.115 3.885 10 N -0.317 5.317 11 C 0.002 3.998 12 C -0.084 4.084 13 N -0.259 5.259 14 C -0.116 4.116 15 C -0.012 4.012 16 O -0.307 6.307 17 C -0.012 4.012 18 C -0.110 4.110 19 C 0.315 3.685 20 O -0.432 6.432 21 C -0.216 4.216 22 H 0.164 0.836 23 C -0.107 4.107 24 C -0.092 4.092 25 C -0.115 4.115 26 C -0.147 4.147 27 C -0.130 4.130 28 C -0.113 4.113 29 C -0.201 4.201 30 S 0.179 5.821 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.112 0.888 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.115 0.885 47 H 0.111 0.889 48 H 0.137 0.863 49 H 0.140 0.860 50 H 0.144 0.856 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.963 -11.622 1.631 12.387 hybrid contribution -0.588 0.123 0.227 0.642 sum 3.375 -11.499 1.857 12.127 Atomic orbital electron populations 1.69917 1.06013 1.27300 1.49823 1.24898 0.94802 0.99278 0.94553 0.86487 0.80415 0.83244 0.77755 1.19441 1.20913 1.20696 1.21466 0.93791 0.90024 1.51806 0.91734 1.19551 0.87587 0.82924 0.98458 1.48090 1.45297 1.34136 1.04205 1.21181 0.97496 0.95512 0.85589 1.22493 0.97039 0.98499 0.90322 1.62127 1.55552 1.05070 1.03121 1.22885 1.00817 0.95749 0.92155 1.22685 0.96034 0.86596 0.95924 1.87958 1.76809 1.24404 1.41577 1.22639 1.00832 0.90433 0.87287 1.22761 0.96467 0.93558 0.98197 1.19779 0.82714 0.81357 0.84640 1.90644 1.31652 1.34113 1.86830 1.24280 1.03719 0.97964 0.95684 0.83550 1.20768 0.96191 0.98502 0.95278 1.20758 0.95902 0.94088 0.98468 1.20771 0.96707 0.96998 0.96978 1.20856 0.95634 0.98093 1.00111 1.21007 0.99702 0.92820 0.99464 1.20376 0.94281 0.99164 0.97500 1.22394 0.98450 0.97622 1.01611 1.86715 1.46131 1.08270 1.41026 0.92548 0.94637 0.94478 0.90207 0.89928 0.90757 0.94295 0.93709 0.88825 0.92241 0.88463 0.92291 0.88697 0.89749 0.94034 0.88487 0.88949 0.86323 0.86036 0.85588 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.87 13.29 55.43 0.74 -23.13 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -13.38 9.39 -34.44 -0.32 -13.70 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.23 5.26 5.11 -5.19 -0.03 5.23 16 10 N -0.59 -11.77 2.46 -175.07 -0.43 -12.20 16 11 C 0.13 2.27 5.41 -4.04 -0.02 2.25 16 12 C 0.05 0.70 5.28 -3.82 -0.02 0.68 16 13 N -0.53 -7.40 4.73 -234.31 -1.11 -8.51 16 14 C 0.01 0.16 5.44 -3.71 -0.02 0.14 16 15 C 0.06 0.74 7.01 37.21 0.26 1.00 16 16 O -0.39 -4.92 10.83 -35.23 -0.38 -5.31 16 17 C 0.07 0.70 7.01 37.21 0.26 0.96 16 18 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16 19 C 0.53 10.66 6.74 -10.98 -0.07 10.58 16 20 O -0.55 -12.13 15.84 5.56 0.09 -12.04 16 21 C -0.09 -1.54 3.29 -27.29 -0.09 -1.63 16 22 H 0.15 2.62 5.73 -51.93 -0.30 2.32 16 23 C -0.07 -1.05 5.48 -27.21 -0.15 -1.20 16 24 C -0.09 -1.37 5.84 -103.80 -0.61 -1.98 16 25 C -0.09 -1.28 9.98 -39.21 -0.39 -1.67 16 26 C -0.13 -1.53 10.00 -39.75 -0.40 -1.92 16 27 C -0.11 -1.36 10.08 -39.63 -0.40 -1.76 16 28 C -0.09 -1.32 10.05 -39.44 -0.40 -1.72 16 29 C -0.09 -1.50 6.48 -39.19 -0.25 -1.75 16 30 S -0.07 -1.26 22.54 -107.50 -2.42 -3.68 16 31 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.04 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.04 0.85 5.52 -51.93 -0.29 0.57 16 34 H 0.08 1.44 6.44 -51.93 -0.33 1.11 16 35 H 0.08 1.58 7.35 -51.93 -0.38 1.20 16 36 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 37 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.24 6.38 -51.93 -0.33 0.91 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 45 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.09 1.35 7.77 -51.93 -0.40 0.95 16 48 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 49 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 50 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 51 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 LS Contribution 421.11 15.07 6.35 6.35 Total: -1.00 -30.08 421.11 -12.87 -42.95 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.91 Total: 4.72 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.77 Total: -4.63 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -0.80 Total: -43.84 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.29 Total: -17.35 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: -1.26 SS G_CDS: -2.42 Total: -3.68 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -30.08 -12.87 -42.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069625725.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.708 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds