Wall clock time and date at job start Tue Mar 31 2020 06:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99533 * 2 1 4 4 H 1.48499 * 109.46882 * 239.99708 * 3 2 1 5 5 H 1.48499 * 109.47418 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46928 * 120.00177 * 3 2 1 7 7 C 1.37868 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00042 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00163 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47583 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00236 * 270.00589 * 10 9 7 12 12 C 1.52998 * 109.46728 * 269.99547 * 11 10 9 13 13 N 1.46893 * 109.47138 * 179.97438 * 12 11 10 14 14 C 1.47010 * 111.00115 * 293.63461 * 13 12 11 15 15 C 1.53105 * 109.26140 * 177.60358 * 14 13 12 16 16 O 1.43021 * 109.25456 * 56.85150 * 15 14 13 17 17 C 1.43018 * 113.73762 * 301.32943 * 16 15 14 18 18 C 1.47019 * 111.00162 * 170.00032 * 13 12 11 19 19 C 1.34783 * 120.00030 * 90.00019 * 10 9 7 20 20 O 1.21275 * 120.00088 * 180.02562 * 19 10 9 21 21 C 1.50701 * 119.99609 * 0.02562 * 19 10 9 22 22 H 1.08998 * 110.96868 * 339.12449 * 21 19 10 23 23 C 1.54134 * 111.09585 * 214.99989 * 21 19 10 24 24 C 1.50876 * 110.47640 * 213.89101 * 23 21 19 25 25 C 1.39764 * 126.69562 * 200.25037 * 24 23 21 26 26 C 1.37700 * 121.00504 * 180.22811 * 25 24 23 27 27 C 1.38322 * 120.54353 * 359.97438 * 26 25 24 28 28 C 1.38026 * 119.29528 * 359.87011 * 27 26 25 29 29 C 1.38705 * 115.49377 * 20.22453 * 24 23 21 30 30 S 1.77441 * 108.24052 * 359.66603 * 29 24 23 31 31 H 0.97001 * 120.00298 * 359.97438 * 1 2 3 32 32 H 1.09008 * 109.46983 * 59.99476 * 9 7 2 33 33 H 1.09001 * 109.47166 * 300.00058 * 9 7 2 34 34 H 1.08992 * 109.47167 * 29.99529 * 11 10 9 35 35 H 1.09001 * 109.47220 * 150.00104 * 11 10 9 36 36 H 1.09004 * 109.47382 * 300.00223 * 12 11 10 37 37 H 1.09005 * 109.47246 * 60.00111 * 12 11 10 38 38 H 1.08999 * 109.51089 * 297.53988 * 14 13 12 39 39 H 1.09005 * 109.50498 * 57.67508 * 14 13 12 40 40 H 1.08997 * 109.50903 * 296.91966 * 15 14 13 41 41 H 1.08998 * 109.50643 * 176.78192 * 15 14 13 42 42 H 1.08998 * 109.50818 * 298.73574 * 17 16 15 43 43 H 1.09000 * 109.54141 * 178.62691 * 17 16 15 44 44 H 1.08999 * 109.50655 * 302.32647 * 18 13 12 45 45 H 1.09000 * 109.50550 * 62.46040 * 18 13 12 46 46 H 1.09002 * 109.27162 * 334.14215 * 23 21 19 47 47 H 1.09002 * 109.27028 * 93.63919 * 23 21 19 48 48 H 1.07999 * 119.52354 * 0.19576 * 25 24 23 49 49 H 1.07998 * 119.72880 * 180.02562 * 26 25 24 50 50 H 1.08005 * 120.35418 * 179.89541 * 27 26 25 51 51 H 1.07996 * 119.92455 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7466 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6793 -4.1693 -1.2682 12 6 1.7487 -5.3005 -1.7099 13 7 2.2256 -5.8584 -2.9823 14 6 2.1070 -4.8732 -4.0669 15 6 2.6689 -5.4737 -5.3584 16 8 1.9765 -6.6898 -5.6534 17 6 2.0717 -7.6722 -4.6184 18 6 1.5037 -7.0939 -3.3195 19 6 2.6411 -4.1248 1.1678 20 8 3.4295 -5.0463 1.1678 21 6 2.1509 -3.5524 2.4728 22 1 1.7643 -2.5426 2.3352 23 6 3.2603 -3.5807 3.5425 24 6 2.6693 -3.8216 4.9096 25 6 3.2647 -3.5302 6.1401 26 6 2.6175 -3.8051 7.3240 27 6 1.3583 -4.3775 7.3204 28 6 0.7527 -4.6696 6.1149 29 6 1.4045 -4.3909 4.9214 30 16 0.8927 -4.6416 3.2410 31 1 -0.4850 0.8400 0.0004 32 1 0.6248 -2.5570 -0.8897 33 1 0.6242 -2.5567 0.8903 34 1 2.6870 -3.3877 -2.0278 35 1 3.6887 -4.5593 -1.1378 36 1 1.7409 -6.0822 -0.9502 37 1 0.7391 -4.9106 -1.8403 38 1 1.0577 -4.6158 -4.2118 39 1 2.6699 -3.9766 -3.8074 40 1 3.7313 -5.6815 -5.2310 41 1 2.5310 -4.7683 -6.1778 42 1 3.1167 -7.9439 -4.4695 43 1 1.5024 -8.5573 -4.9023 44 1 1.6263 -7.8184 -2.5144 45 1 0.4448 -6.8720 -3.4523 46 1 3.9647 -4.3791 3.3093 47 1 3.7859 -2.6257 3.5410 48 1 4.2476 -3.0832 6.1632 49 1 3.0966 -3.5710 8.2632 50 1 0.8542 -4.5934 8.2508 51 1 -0.2305 -5.1162 6.1002 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069625726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:05 Heat of formation + Delta-G solvation = -40.770266 kcal Electronic energy + Delta-G solvation = -32259.269471 eV Core-core repulsion = 28056.780636 eV Total energy + Delta-G solvation = -4202.488835 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -39.80438 -39.42814 -38.94390 -36.24921 -34.94799 -34.23856 -32.71516 -31.26955 -30.83872 -30.41230 -29.11778 -27.36983 -26.20131 -24.44468 -24.04420 -23.13718 -22.93122 -21.92432 -20.99013 -20.32237 -18.63521 -17.52835 -17.01712 -16.58068 -16.55323 -16.17297 -15.80121 -15.45870 -15.23766 -15.15772 -15.04548 -14.95876 -14.61019 -14.50843 -14.05885 -13.73423 -13.65823 -13.26625 -13.02361 -12.74629 -12.67200 -12.43936 -12.37229 -12.32162 -12.00538 -11.96393 -11.48777 -11.43271 -11.39231 -11.22896 -11.03735 -10.97602 -10.84576 -10.71290 -10.44951 -10.24241 -10.04066 -9.91210 -9.71518 -9.66017 -9.29991 -8.74180 -8.66742 -8.38513 -7.91172 -7.21632 -6.28562 -4.38039 1.18512 1.32545 1.53371 2.35224 3.17318 3.23515 3.23561 3.36424 3.45859 3.67312 3.79134 4.04987 4.23353 4.58537 4.74907 4.83319 4.93461 4.96294 4.98577 5.01306 5.04432 5.10303 5.15269 5.23383 5.34611 5.41284 5.42971 5.50539 5.52316 5.57422 5.59549 5.68409 5.74503 5.79455 5.90229 5.90852 5.92829 5.98910 6.14207 6.18287 6.30258 6.34093 6.35707 6.46246 6.54617 6.88165 6.95900 6.99190 7.04320 7.08093 7.34786 7.64476 7.90931 8.09146 8.62447 8.77668 9.30879 10.77914 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007374 B = 0.002978 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3796.160692 B = 9400.194381 C =12255.199934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.233 3.767 10 N -0.585 5.585 11 C 0.127 3.873 12 C 0.044 3.956 13 N -0.533 5.533 14 C 0.012 3.988 15 C 0.065 3.935 16 O -0.389 6.389 17 C 0.065 3.935 18 C 0.018 3.982 19 C 0.540 3.460 20 O -0.551 6.551 21 C -0.079 4.079 22 H 0.146 0.854 23 C -0.079 4.079 24 C -0.094 4.094 25 C -0.095 4.095 26 C -0.124 4.124 27 C -0.109 4.109 28 C -0.089 4.089 29 C -0.079 4.079 30 S -0.108 6.108 31 H 0.268 0.732 32 H 0.038 0.962 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.039 0.961 38 H 0.045 0.955 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.107 0.893 47 H 0.095 0.905 48 H 0.123 0.877 49 H 0.124 0.876 50 H 0.128 0.872 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 -9.579 3.352 10.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.114 3.886 10 N -0.315 5.315 11 C 0.003 3.997 12 C -0.085 4.085 13 N -0.258 5.258 14 C -0.117 4.117 15 C -0.012 4.012 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.110 4.110 19 C 0.324 3.676 20 O -0.431 6.431 21 C -0.210 4.210 22 H 0.164 0.836 23 C -0.117 4.117 24 C -0.099 4.099 25 C -0.115 4.115 26 C -0.144 4.144 27 C -0.129 4.129 28 C -0.113 4.113 29 C -0.192 4.192 30 S 0.136 5.864 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.104 0.896 45 H 0.060 0.940 46 H 0.125 0.875 47 H 0.113 0.887 48 H 0.141 0.859 49 H 0.142 0.858 50 H 0.146 0.854 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.607 -10.756 2.529 11.353 hybrid contribution 0.425 2.176 0.812 2.361 sum 3.031 -8.580 3.341 9.694 Atomic orbital electron populations 1.69910 1.06021 1.27654 1.48796 1.24938 0.94841 0.99316 0.94466 0.86572 0.79601 0.82524 0.78922 1.20026 1.21046 1.19996 1.21421 0.93616 0.90274 1.53131 0.91933 1.19551 0.87519 0.82591 0.98970 1.48110 1.45070 1.34369 1.03955 1.21219 0.98006 0.94876 0.85609 1.22500 0.97332 0.98158 0.90506 1.62133 1.56122 1.04934 1.02642 1.22890 1.00845 0.96177 0.91745 1.22682 0.96057 0.86115 0.96361 1.87960 1.74995 1.25525 1.42285 1.22644 1.01006 0.91040 0.86483 1.22767 0.96447 0.93203 0.98602 1.19330 0.81169 0.82521 0.84542 1.90622 1.35690 1.29583 1.87202 1.24227 0.96937 1.04036 0.95782 0.83639 1.20865 0.97803 1.05136 0.87850 1.20893 0.93879 0.99928 0.95220 1.20844 1.00007 0.99892 0.90761 1.20909 0.95592 1.00271 0.97671 1.21034 0.95428 0.99225 0.97170 1.20385 0.99727 1.01153 0.90041 1.22158 0.97173 1.02969 0.96918 1.86087 1.43412 1.59626 0.97230 0.92269 0.94408 0.94104 0.90159 0.89889 0.90464 0.94290 0.93715 0.88891 0.92247 0.88491 0.92282 0.88678 0.89649 0.94004 0.87469 0.88706 0.85930 0.85797 0.85374 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.64 13.29 55.43 0.74 -22.91 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.55 -13.46 9.02 -34.44 -0.31 -13.77 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.23 5.29 4.76 -5.20 -0.02 5.27 16 10 N -0.58 -11.77 2.46 -175.06 -0.43 -12.20 16 11 C 0.13 2.26 5.34 -4.04 -0.02 2.24 16 12 C 0.04 0.70 5.28 -3.83 -0.02 0.68 16 13 N -0.53 -7.50 4.73 -234.30 -1.11 -8.61 16 14 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 15 C 0.06 0.74 7.01 37.21 0.26 1.00 16 16 O -0.39 -4.97 10.83 -35.23 -0.38 -5.35 16 17 C 0.07 0.71 7.01 37.21 0.26 0.97 16 18 C 0.02 0.22 5.65 -3.71 -0.02 0.20 16 19 C 0.54 10.89 6.86 -10.98 -0.08 10.81 16 20 O -0.55 -11.87 15.48 5.56 0.09 -11.78 16 21 C -0.08 -1.48 3.03 -27.29 -0.08 -1.56 16 22 H 0.15 2.98 5.95 -51.93 -0.31 2.67 16 23 C -0.08 -1.29 5.84 -27.20 -0.16 -1.45 16 24 C -0.09 -1.45 5.98 -103.79 -0.62 -2.07 16 25 C -0.10 -1.22 9.98 -39.21 -0.39 -1.61 16 26 C -0.12 -1.37 10.00 -39.75 -0.40 -1.77 16 27 C -0.11 -1.21 10.08 -39.63 -0.40 -1.61 16 28 C -0.09 -1.19 10.05 -39.44 -0.40 -1.58 16 29 C -0.08 -1.27 6.48 -39.19 -0.25 -1.52 16 30 S -0.11 -1.91 22.54 -107.50 -2.42 -4.34 16 31 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.04 0.91 8.07 -51.92 -0.42 0.49 16 33 H 0.04 0.98 6.36 -51.93 -0.33 0.65 16 34 H 0.08 1.41 6.44 -51.93 -0.33 1.08 16 35 H 0.08 1.53 7.42 -51.93 -0.39 1.14 16 36 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 37 H 0.04 0.66 8.12 -51.93 -0.42 0.24 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.21 6.38 -51.93 -0.33 0.88 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 45 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.11 1.83 6.99 -51.93 -0.36 1.46 16 47 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 48 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 49 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 50 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 51 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 420.63 15.07 6.34 6.34 Total: -1.00 -28.79 420.63 -12.90 -41.68 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -7.93 Total: 6.36 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -2.77 Total: -4.00 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -0.80 Total: -43.72 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.30 Total: -17.14 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: -1.91 SS G_CDS: -2.42 Total: -4.34 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -28.79 -12.90 -41.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069625726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.914 kcal (2) G-P(sol) polarization free energy of solvation -28.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds