Wall clock time and date at job start Tue Mar 31 2020 06:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99533 * 2 1 4 4 H 1.48499 * 109.46882 * 239.99708 * 3 2 1 5 5 H 1.48499 * 109.47418 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46928 * 120.00177 * 3 2 1 7 7 C 1.37868 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00042 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00163 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47583 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00236 * 270.00589 * 10 9 7 12 12 C 1.52998 * 109.46728 * 269.99547 * 11 10 9 13 13 N 1.46893 * 109.47138 * 179.97438 * 12 11 10 14 14 C 1.47010 * 111.00115 * 293.63461 * 13 12 11 15 15 C 1.53105 * 109.26140 * 177.60358 * 14 13 12 16 16 O 1.43021 * 109.25456 * 56.85150 * 15 14 13 17 17 C 1.43018 * 113.73762 * 301.32943 * 16 15 14 18 18 C 1.47019 * 111.00162 * 170.00032 * 13 12 11 19 19 C 1.34783 * 120.00030 * 90.00019 * 10 9 7 20 20 O 1.21275 * 120.00088 * 180.02562 * 19 10 9 21 21 C 1.50701 * 119.99609 * 0.02562 * 19 10 9 22 22 H 1.08998 * 110.96868 * 339.12449 * 21 19 10 23 23 C 1.54134 * 111.09585 * 214.99989 * 21 19 10 24 24 C 1.50876 * 110.47640 * 213.89101 * 23 21 19 25 25 C 1.39764 * 126.69562 * 200.25037 * 24 23 21 26 26 C 1.37700 * 121.00504 * 180.22811 * 25 24 23 27 27 C 1.38322 * 120.54353 * 359.97438 * 26 25 24 28 28 C 1.38026 * 119.29528 * 359.87011 * 27 26 25 29 29 C 1.38705 * 115.49377 * 20.22453 * 24 23 21 30 30 S 1.77441 * 108.24052 * 359.66603 * 29 24 23 31 31 H 0.97001 * 120.00298 * 359.97438 * 1 2 3 32 32 H 1.09008 * 109.46983 * 59.99476 * 9 7 2 33 33 H 1.09001 * 109.47166 * 300.00058 * 9 7 2 34 34 H 1.08992 * 109.47167 * 29.99529 * 11 10 9 35 35 H 1.09001 * 109.47220 * 150.00104 * 11 10 9 36 36 H 1.09004 * 109.47382 * 300.00223 * 12 11 10 37 37 H 1.09005 * 109.47246 * 60.00111 * 12 11 10 38 38 H 1.08999 * 109.51089 * 297.53988 * 14 13 12 39 39 H 1.09005 * 109.50498 * 57.67508 * 14 13 12 40 40 H 1.08997 * 109.50903 * 296.91966 * 15 14 13 41 41 H 1.08998 * 109.50643 * 176.78192 * 15 14 13 42 42 H 1.08998 * 109.50818 * 298.73574 * 17 16 15 43 43 H 1.09000 * 109.54141 * 178.62691 * 17 16 15 44 44 H 1.08999 * 109.50655 * 302.32647 * 18 13 12 45 45 H 1.09000 * 109.50550 * 62.46040 * 18 13 12 46 46 H 1.09002 * 109.27162 * 334.14215 * 23 21 19 47 47 H 1.09002 * 109.27028 * 93.63919 * 23 21 19 48 48 H 1.07999 * 119.52354 * 0.19576 * 25 24 23 49 49 H 1.07998 * 119.72880 * 180.02562 * 26 25 24 50 50 H 1.08005 * 120.35418 * 179.89541 * 27 26 25 51 51 H 1.07996 * 119.92455 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7466 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6793 -4.1693 -1.2682 12 6 1.7487 -5.3005 -1.7099 13 7 2.2256 -5.8584 -2.9823 14 6 2.1070 -4.8732 -4.0669 15 6 2.6689 -5.4737 -5.3584 16 8 1.9765 -6.6898 -5.6534 17 6 2.0717 -7.6722 -4.6184 18 6 1.5037 -7.0939 -3.3195 19 6 2.6411 -4.1248 1.1678 20 8 3.4295 -5.0463 1.1678 21 6 2.1509 -3.5524 2.4728 22 1 1.7643 -2.5426 2.3352 23 6 3.2603 -3.5807 3.5425 24 6 2.6693 -3.8216 4.9096 25 6 3.2647 -3.5302 6.1401 26 6 2.6175 -3.8051 7.3240 27 6 1.3583 -4.3775 7.3204 28 6 0.7527 -4.6696 6.1149 29 6 1.4045 -4.3909 4.9214 30 16 0.8927 -4.6416 3.2410 31 1 -0.4850 0.8400 0.0004 32 1 0.6248 -2.5570 -0.8897 33 1 0.6242 -2.5567 0.8903 34 1 2.6870 -3.3877 -2.0278 35 1 3.6887 -4.5593 -1.1378 36 1 1.7409 -6.0822 -0.9502 37 1 0.7391 -4.9106 -1.8403 38 1 1.0577 -4.6158 -4.2118 39 1 2.6699 -3.9766 -3.8074 40 1 3.7313 -5.6815 -5.2310 41 1 2.5310 -4.7683 -6.1778 42 1 3.1167 -7.9439 -4.4695 43 1 1.5024 -8.5573 -4.9023 44 1 1.6263 -7.8184 -2.5144 45 1 0.4448 -6.8720 -3.4523 46 1 3.9647 -4.3791 3.3093 47 1 3.7859 -2.6257 3.5410 48 1 4.2476 -3.0832 6.1632 49 1 3.0966 -3.5710 8.2632 50 1 0.8542 -4.5934 8.2508 51 1 -0.2305 -5.1162 6.1002 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069625726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:04 Heat of formation + Delta-G solvation = -56.250105 kcal Electronic energy + Delta-G solvation = -32259.940727 eV Core-core repulsion = 28056.780636 eV Total energy + Delta-G solvation = -4203.160091 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.25378 -40.50990 -40.11987 -37.57564 -36.47845 -35.48113 -34.59776 -32.27154 -31.83356 -31.72794 -30.39325 -29.12579 -27.45779 -25.74994 -25.07127 -24.93924 -24.02576 -23.15409 -22.12322 -21.39273 -20.20377 -18.85097 -18.64927 -18.32377 -17.81721 -17.23303 -17.03088 -16.70899 -16.43766 -16.38867 -16.27007 -16.19844 -16.00096 -15.70239 -15.32401 -15.09991 -14.82408 -14.47453 -14.33953 -14.22107 -14.01254 -13.95810 -13.72423 -13.57209 -13.42118 -13.17758 -13.00546 -12.90245 -12.62421 -12.52986 -12.35730 -12.34526 -12.15270 -12.04554 -11.92924 -11.79025 -11.48975 -11.34853 -11.10741 -10.74043 -10.67988 -10.59572 -9.76678 -9.69860 -9.48636 -8.55040 -8.25045 -6.41323 0.01500 0.25047 0.34658 1.06442 1.41567 1.42137 1.49928 1.76571 1.97186 2.37868 2.67612 2.75994 2.94665 3.06004 3.31952 3.33671 3.70810 3.79377 3.88300 3.92892 3.94800 4.01549 4.06118 4.16711 4.19839 4.28541 4.33938 4.39456 4.43637 4.48902 4.54578 4.58912 4.61565 4.68332 4.70508 4.73980 4.78573 4.83039 4.86937 4.91005 4.98371 5.02135 5.10687 5.29603 5.39234 5.50790 5.53472 5.67449 5.81606 5.87255 5.95166 5.96086 6.14253 6.35689 6.70437 7.06428 7.31833 8.80786 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007374 B = 0.002978 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3796.160692 B = 9400.194381 C =12255.199934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.026 3.974 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.059 0.941 9 C 0.253 3.747 10 N -0.588 5.588 11 C 0.129 3.871 12 C 0.059 3.941 13 N -0.536 5.536 14 C 0.011 3.989 15 C 0.068 3.932 16 O -0.403 6.403 17 C 0.067 3.933 18 C 0.016 3.984 19 C 0.540 3.460 20 O -0.566 6.566 21 C -0.075 4.075 22 H 0.122 0.878 23 C -0.072 4.072 24 C -0.116 4.116 25 C -0.100 4.100 26 C -0.114 4.114 27 C -0.098 4.098 28 C -0.099 4.099 29 C -0.101 4.101 30 S -0.145 6.145 31 H 0.269 0.731 32 H 0.021 0.979 33 H 0.026 0.974 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.026 0.974 38 H 0.033 0.967 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.116 0.884 42 H 0.065 0.935 43 H 0.120 0.880 44 H 0.092 0.908 45 H 0.035 0.965 46 H 0.097 0.903 47 H 0.103 0.897 48 H 0.144 0.856 49 H 0.163 0.837 50 H 0.167 0.833 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.109 -9.576 5.109 11.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.176 4.176 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.589 4.589 8 H 0.077 0.923 9 C 0.132 3.868 10 N -0.317 5.317 11 C 0.006 3.994 12 C -0.070 4.070 13 N -0.262 5.262 14 C -0.118 4.118 15 C -0.008 4.008 16 O -0.322 6.322 17 C -0.009 4.009 18 C -0.112 4.112 19 C 0.326 3.674 20 O -0.447 6.447 21 C -0.207 4.207 22 H 0.140 0.860 23 C -0.110 4.110 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.134 4.134 27 C -0.118 4.118 28 C -0.122 4.122 29 C -0.214 4.214 30 S 0.098 5.902 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.044 0.956 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.044 0.956 38 H 0.051 0.949 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.134 0.866 42 H 0.083 0.917 43 H 0.138 0.862 44 H 0.111 0.889 45 H 0.053 0.947 46 H 0.115 0.885 47 H 0.121 0.879 48 H 0.162 0.838 49 H 0.181 0.819 50 H 0.185 0.815 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.775 -10.767 4.286 12.188 hybrid contribution 0.049 2.118 0.389 2.154 sum 3.825 -8.649 4.675 10.549 Atomic orbital electron populations 1.70015 1.07364 1.28420 1.49800 1.25653 0.95496 1.02357 0.94059 0.85632 0.78446 0.78705 0.79127 1.19432 1.20812 1.19423 1.21591 0.93453 0.91126 1.52703 0.92324 1.19143 0.87404 0.82951 0.97300 1.48089 1.44705 1.33956 1.04994 1.21268 0.98056 0.95362 0.84684 1.22221 0.96140 0.97068 0.91546 1.62159 1.56243 1.05724 1.02024 1.22942 1.00276 0.96150 0.92382 1.22752 0.96140 0.86142 0.95815 1.87946 1.75275 1.26024 1.42927 1.22776 1.01729 0.91252 0.85190 1.22879 0.96004 0.92444 0.99895 1.19551 0.80725 0.82197 0.84952 1.90598 1.36405 1.30237 1.87493 1.24030 0.98098 1.02610 0.95917 0.85974 1.20790 0.96799 1.05158 0.88235 1.20915 0.94206 1.01536 0.95497 1.21187 1.01010 0.99542 0.90194 1.21420 0.95306 0.98174 0.98463 1.21524 0.95370 0.97326 0.97552 1.20730 1.00415 1.01138 0.89950 1.22244 0.97992 1.05294 0.95842 1.86036 1.43973 1.59893 1.00336 0.92216 0.96089 0.95640 0.90087 0.90291 0.91557 0.95579 0.94869 0.89143 0.91515 0.86621 0.91661 0.86243 0.88926 0.94665 0.88473 0.87916 0.83829 0.81917 0.81524 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.07 13.29 21.44 0.28 -49.79 16 2 C 0.03 1.31 5.46 84.65 0.46 1.78 16 3 Si 0.96 40.73 29.54 68.60 2.03 42.75 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.55 -27.92 9.02 25.60 0.23 -27.69 16 8 H 0.06 2.98 7.81 -2.91 -0.02 2.95 16 9 C 0.25 12.08 4.76 85.63 0.41 12.49 16 10 N -0.59 -24.92 2.46 -826.16 -2.03 -26.95 16 11 C 0.13 4.82 5.34 86.38 0.46 5.28 16 12 C 0.06 2.00 5.28 86.30 0.46 2.46 16 13 N -0.54 -15.33 4.73 -895.19 -4.23 -19.56 16 14 C 0.01 0.28 5.44 86.32 0.47 0.75 16 15 C 0.07 1.50 7.01 72.02 0.50 2.00 16 16 O -0.40 -9.77 10.83 -148.98 -1.61 -11.38 16 17 C 0.07 1.37 7.01 72.02 0.50 1.88 16 18 C 0.02 0.38 5.65 86.31 0.49 0.87 16 19 C 0.54 22.91 6.86 87.66 0.60 23.51 16 20 O -0.57 -25.35 15.48 -3.01 -0.05 -25.40 16 21 C -0.08 -2.99 3.03 30.23 0.09 -2.90 16 22 H 0.12 5.36 5.95 -2.39 -0.01 5.34 16 23 C -0.07 -2.44 5.84 30.29 0.18 -2.26 16 24 C -0.12 -3.55 5.98 -19.33 -0.12 -3.67 16 25 C -0.10 -2.31 9.98 22.51 0.22 -2.08 16 26 C -0.11 -2.05 10.00 22.16 0.22 -1.83 16 27 C -0.10 -1.81 10.08 22.24 0.22 -1.59 16 28 C -0.10 -2.47 10.05 22.36 0.22 -2.24 16 29 C -0.10 -3.24 6.48 22.52 0.15 -3.09 16 30 S -0.15 -5.44 22.54 -56.49 -1.27 -6.72 16 31 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 32 H 0.02 1.07 8.07 -2.38 -0.02 1.05 16 33 H 0.03 1.31 6.36 -2.39 -0.02 1.29 16 34 H 0.08 2.98 6.44 -2.39 -0.02 2.96 16 35 H 0.08 3.01 7.42 -2.39 -0.02 2.99 16 36 H 0.07 2.37 8.04 -2.38 -0.02 2.35 16 37 H 0.03 0.94 8.12 -2.38 -0.02 0.92 16 38 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 2.40 6.38 -2.38 -0.02 2.39 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.09 2.10 8.09 -2.39 -0.02 2.08 16 45 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.10 3.44 6.99 -2.39 -0.02 3.42 16 47 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 48 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 49 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 50 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 51 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -63.84 420.63 -0.18 -64.01 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.93 Total: 29.35 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 5.78 Total: 3.67 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -5.98 Total: -96.29 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -1.66 Total: -36.77 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal Atomic # 16 Polarization: -5.44 SS G_CDS: -1.27 Total: -6.72 kcal Total: -63.84 -0.18 -64.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069625726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.763 kcal (2) G-P(sol) polarization free energy of solvation -63.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds