Wall clock time and date at job start Tue Mar 31 2020 05:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39345 * 119.58298 * 2 1 4 4 C 1.36139 * 121.08605 * 179.97438 * 3 2 1 5 5 C 1.40525 * 119.81561 * 0.05249 * 4 3 2 6 6 N 1.33824 * 120.81490 * 179.97438 * 5 4 3 7 7 C 1.30801 * 121.71748 * 180.02562 * 6 5 4 8 8 C 1.50694 * 119.23361 * 180.02562 * 7 6 5 9 9 C 1.40607 * 121.53659 * 359.97438 * 7 6 5 10 10 C 1.47760 * 120.26519 * 179.97438 * 9 7 6 11 11 O 1.21556 * 120.00153 * 305.26235 * 10 9 7 12 12 N 1.34782 * 119.99626 * 125.26614 * 10 9 7 13 13 C 1.46497 * 120.00100 * 354.49351 * 12 10 9 14 14 C 1.50702 * 109.47304 * 275.16426 * 13 12 10 15 15 H 1.08010 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00575 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00307 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99674 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.46988 * 89.99575 * 18 16 14 20 20 H 1.48495 * 109.47004 * 209.99745 * 18 16 14 21 21 H 1.48497 * 109.47148 * 330.00169 * 18 16 14 22 22 C 1.46497 * 119.99638 * 174.49667 * 12 10 9 23 23 C 1.50701 * 109.47203 * 90.00014 * 22 12 10 24 24 C 1.38226 * 119.61981 * 94.97560 * 23 22 12 25 25 C 1.38630 * 119.16083 * 179.79026 * 24 23 22 26 26 C 1.38673 * 118.42058 * 0.47067 * 25 24 23 27 27 C 1.38183 * 119.16046 * 359.50923 * 26 25 24 28 28 N 1.31850 * 119.61545 * 274.99684 * 23 22 12 29 29 C 1.39004 * 119.46158 * 0.25454 * 9 7 6 30 30 C 1.40533 * 117.96787 * 359.50886 * 29 9 7 31 31 C 1.36145 * 119.58474 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46815 * 269.97737 * 1 2 3 33 33 H 1.08999 * 109.46920 * 29.97358 * 1 2 3 34 34 H 1.08993 * 109.46869 * 149.97825 * 1 2 3 35 35 H 1.07998 * 119.45387 * 0.05155 * 3 2 1 36 36 H 1.07997 * 120.09126 * 180.02562 * 4 3 2 37 37 H 1.09001 * 109.47071 * 264.93714 * 8 7 6 38 38 H 1.09005 * 109.47240 * 24.93534 * 8 7 6 39 39 H 1.09001 * 109.47089 * 144.93503 * 8 7 6 40 40 H 1.09001 * 109.47555 * 35.16208 * 13 12 10 41 41 H 1.08996 * 109.47076 * 155.16717 * 13 12 10 42 42 H 0.97003 * 119.99734 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.47582 * 329.99704 * 22 12 10 44 44 H 1.09007 * 109.47062 * 209.99615 * 22 12 10 45 45 H 1.07995 * 120.42109 * 0.02562 * 24 23 22 46 46 H 1.08002 * 120.79090 * 180.23839 * 25 24 23 47 47 H 1.07997 * 120.42205 * 179.78091 * 26 25 24 48 48 H 1.08003 * 119.61632 * 180.25240 * 27 26 25 49 49 H 1.08003 * 121.01960 * 179.74998 * 29 9 7 50 50 H 1.07995 * 120.18927 * 359.95427 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2118 0.0000 4 6 3.5559 1.2475 0.0005 5 6 4.2863 0.0470 0.0000 6 7 5.6245 0.0588 -0.0001 7 6 6.3219 -1.0478 -0.0011 8 6 7.8268 -0.9692 -0.0005 9 6 5.7002 -2.3089 -0.0017 10 6 6.5156 -3.5412 -0.0034 11 8 7.3571 -3.7120 -0.8638 12 7 6.3261 -4.4759 0.9490 13 6 5.3990 -4.2186 2.0537 14 6 6.1123 -3.4574 3.1413 15 1 7.1523 -3.1916 3.0214 16 6 5.4373 -3.0996 4.2890 17 7 6.0600 -2.4358 5.2383 18 14 3.6384 -3.5588 4.4961 19 1 3.5391 -4.8886 5.1496 20 1 2.9617 -2.5410 5.3394 21 1 2.9846 -3.6120 3.1639 22 6 7.0474 -5.7491 0.8794 23 6 8.3563 -5.6258 1.6162 24 6 8.4375 -6.0270 2.9364 25 6 9.6473 -5.9135 3.6037 26 6 10.7326 -5.3892 2.9180 27 6 10.5759 -5.0095 1.5986 28 7 9.4106 -5.1362 0.9940 29 6 4.3124 -2.3870 -0.0066 30 6 3.5846 -1.1848 -0.0001 31 6 2.1792 -1.1840 -0.0005 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3633 0.8902 -0.5134 34 1 -0.3633 -0.8897 -0.5141 35 1 1.6393 2.1379 0.0008 36 1 4.0726 2.1958 0.0009 37 1 8.1947 -1.0397 -1.0241 38 1 8.1409 -0.0202 0.4340 39 1 8.2333 -1.7910 0.5891 40 1 4.5562 -3.6300 1.6912 41 1 5.0360 -5.1662 2.4516 42 1 5.5849 -2.1837 6.0455 43 1 7.2398 -6.0013 -0.1634 44 1 6.4450 -6.5335 1.3378 45 1 7.5704 -6.4274 3.4406 46 1 9.7414 -6.2226 4.6343 47 1 11.6894 -5.2830 3.4075 48 1 11.4173 -4.6041 1.0563 49 1 3.8086 -3.3424 -0.0112 50 1 1.6355 -2.1171 -0.0002 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069697749.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:39 Heat of formation + Delta-G solvation = 61.003523 kcal Electronic energy + Delta-G solvation = -34723.382354 eV Core-core repulsion = 30487.581473 eV Total energy + Delta-G solvation = -4235.800882 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.169 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.79510 -39.83701 -38.88822 -37.17044 -35.31668 -33.40556 -32.73220 -32.56320 -31.96622 -31.38991 -30.26206 -28.90472 -28.23612 -26.34985 -25.68586 -24.20534 -23.07559 -22.48518 -21.99043 -21.83176 -21.44368 -19.34235 -17.86053 -17.15113 -16.63794 -16.43123 -16.24631 -15.78714 -15.71255 -15.19068 -15.08389 -14.51158 -14.40539 -14.22633 -14.20153 -13.70275 -13.54958 -13.47792 -13.11863 -12.97148 -12.89147 -12.68724 -12.52870 -12.40373 -12.38216 -12.22037 -11.98546 -11.73474 -11.69840 -11.51043 -11.34726 -11.20788 -11.00670 -10.77788 -10.68074 -10.39109 -10.10503 -9.69188 -9.56450 -9.37137 -9.04775 -8.95908 -8.75406 -8.52322 -8.29756 -7.96200 -7.82047 -6.23208 -4.23200 0.56308 0.98909 1.53343 1.79114 2.17238 2.91232 3.11321 3.18058 3.21496 3.30317 3.73666 4.22649 4.33274 4.39238 4.48490 4.71023 4.74792 4.82340 4.91127 5.00972 5.05538 5.11298 5.19835 5.23848 5.24882 5.30732 5.47847 5.51693 5.53063 5.58089 5.62854 5.76894 5.83893 5.87085 5.90170 6.05025 6.07854 6.10508 6.12619 6.16743 6.19609 6.28139 6.30230 6.45511 6.54033 6.54872 6.56671 6.60934 6.63841 6.79199 7.04677 7.14328 7.19978 7.39000 7.97003 8.26328 8.34036 8.51860 8.74777 8.85540 9.35621 10.89340 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.010140 B = 0.003654 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.773978 B = 7660.771742 C = 8957.911785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.099 4.099 4 C -0.093 4.093 5 C 0.142 3.858 6 N -0.482 5.482 7 C 0.214 3.786 8 C -0.101 4.101 9 C -0.143 4.143 10 C 0.570 3.430 11 O -0.528 6.528 12 N -0.583 5.583 13 C 0.200 3.800 14 C -0.529 4.529 15 H 0.077 0.923 16 C 0.080 3.920 17 N -0.886 5.886 18 Si 0.863 3.137 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.264 1.264 22 C 0.173 3.827 23 C 0.119 3.881 24 C -0.131 4.131 25 C -0.079 4.079 26 C -0.177 4.177 27 C 0.088 3.912 28 N -0.458 5.458 29 C -0.023 4.023 30 C -0.106 4.106 31 C -0.089 4.089 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.031 0.969 42 H 0.265 0.735 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.132 0.868 46 H 0.128 0.872 47 H 0.126 0.874 48 H 0.147 0.853 49 H 0.141 0.859 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.498 -1.748 -7.491 8.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.119 4.119 4 C -0.112 4.112 5 C 0.020 3.980 6 N -0.191 5.191 7 C 0.061 3.939 8 C -0.158 4.158 9 C -0.149 4.149 10 C 0.356 3.644 11 O -0.406 6.406 12 N -0.313 5.313 13 C 0.079 3.921 14 C -0.567 4.567 15 H 0.095 0.905 16 C -0.124 4.124 17 N -0.524 5.524 18 Si 0.689 3.311 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.188 1.188 22 C 0.049 3.951 23 C -0.020 4.020 24 C -0.151 4.151 25 C -0.105 4.105 26 C -0.197 4.197 27 C -0.070 4.070 28 N -0.167 5.167 29 C -0.049 4.049 30 C -0.108 4.108 31 C -0.107 4.107 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.144 0.856 36 H 0.152 0.848 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.150 0.850 46 H 0.146 0.854 47 H 0.144 0.856 48 H 0.165 0.835 49 H 0.159 0.841 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.841 -0.643 -8.626 9.464 hybrid contribution -1.292 -1.083 1.824 2.484 sum -5.133 -1.726 -6.802 8.694 Atomic orbital electron populations 1.20787 0.91059 1.02624 1.02364 1.19577 0.96229 0.93007 1.01078 1.20736 0.93914 0.97527 0.99696 1.20744 0.93447 0.96904 1.00103 1.18877 0.89483 0.92545 0.97089 1.67787 1.06297 1.30005 1.15055 1.21311 0.97021 0.86413 0.89155 1.20758 0.88134 1.03655 1.03267 1.20662 0.94192 0.95299 1.04704 1.17891 0.82473 0.82379 0.81607 1.90774 1.33482 1.77909 1.38390 1.47818 1.43332 1.15158 1.25042 1.20082 0.89422 0.97194 0.85406 1.21256 0.99527 1.35782 1.00121 0.90473 1.24818 0.97484 0.94470 0.95631 1.69882 1.36668 1.38210 1.07600 0.87050 0.86255 0.78812 0.78955 1.19914 1.20887 1.18845 1.20165 0.88029 0.86071 1.00864 1.21504 0.94472 0.94126 0.91927 1.21909 0.98128 1.00084 0.95002 1.21475 0.92787 0.96577 0.99641 1.22039 0.99757 1.01518 0.96421 1.22633 0.95150 0.96906 0.92301 1.67540 0.98913 1.11268 1.38959 1.21739 0.92634 0.97757 0.92754 1.18660 0.94539 0.93753 1.03832 1.20831 0.92197 0.98147 0.99571 0.91171 0.91574 0.91596 0.85615 0.84834 0.89828 0.90639 0.90141 0.94470 0.95072 0.92474 0.88982 0.89330 0.84968 0.85417 0.85610 0.83541 0.84141 0.85510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.99 36.01 0.36 -0.67 16 2 C -0.10 -1.26 5.85 -104.96 -0.61 -1.88 16 3 C -0.10 -1.26 9.58 -39.92 -0.38 -1.64 16 4 C -0.09 -1.42 9.97 -39.47 -0.39 -1.81 16 5 C 0.14 2.62 6.61 -84.79 -0.56 2.06 16 6 N -0.48 -9.65 10.20 -6.93 -0.07 -9.72 16 7 C 0.21 4.38 6.82 -82.14 -0.56 3.82 16 8 C -0.10 -1.91 9.12 36.00 0.33 -1.58 16 9 C -0.14 -2.90 4.97 -104.83 -0.52 -3.42 16 10 C 0.57 11.80 6.01 -12.37 -0.07 11.73 16 11 O -0.53 -11.63 15.81 5.32 0.08 -11.55 16 12 N -0.58 -11.54 2.45 -177.58 -0.44 -11.98 16 13 C 0.20 4.25 4.05 -5.19 -0.02 4.23 16 14 C -0.53 -13.59 9.90 -34.44 -0.34 -13.93 16 15 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 16 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.89 -25.67 13.96 55.43 0.77 -24.90 16 18 Si 0.86 19.68 27.47 -169.99 -4.67 15.01 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 22 C 0.17 2.99 5.71 -5.19 -0.03 2.96 16 23 C 0.12 2.19 6.36 -82.59 -0.53 1.66 16 24 C -0.13 -2.27 9.72 -39.44 -0.38 -2.65 16 25 C -0.08 -1.24 10.18 -39.28 -0.40 -1.64 16 26 C -0.18 -2.64 10.11 -39.44 -0.40 -3.03 16 27 C 0.09 1.43 11.18 -17.55 -0.20 1.23 16 28 N -0.46 -8.70 10.27 -9.47 -0.10 -8.79 16 29 C -0.02 -0.41 7.49 -38.43 -0.29 -0.70 16 30 C -0.11 -1.86 5.74 -106.82 -0.61 -2.48 16 31 C -0.09 -1.29 9.38 -39.47 -0.37 -1.66 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 34 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.08 1.70 7.12 -51.93 -0.37 1.33 16 40 H 0.04 0.80 3.60 -51.93 -0.19 0.61 16 41 H 0.03 0.62 7.26 -51.93 -0.38 0.24 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.09 1.57 7.50 -51.93 -0.39 1.18 16 44 H 0.09 1.26 7.76 -51.93 -0.40 0.86 16 45 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 46 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 47 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 48 H 0.15 1.97 8.06 -52.48 -0.42 1.55 16 49 H 0.14 2.22 7.38 -52.48 -0.39 1.83 16 50 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 419.09 15.07 6.32 6.32 Total: -1.00 -33.08 419.09 -10.95 -44.03 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.77 Total: 8.97 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -6.08 Total: -7.39 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.17 Total: -55.39 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.67 Total: 15.01 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.08 -10.95 -44.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069697749.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.036 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds