Wall clock time and date at job start Tue Mar 31 2020 05:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39345 * 119.58298 * 2 1 4 4 C 1.36139 * 121.08605 * 179.97438 * 3 2 1 5 5 C 1.40525 * 119.81561 * 0.05249 * 4 3 2 6 6 N 1.33824 * 120.81490 * 179.97438 * 5 4 3 7 7 C 1.30801 * 121.71748 * 180.02562 * 6 5 4 8 8 C 1.50694 * 119.23361 * 180.02562 * 7 6 5 9 9 C 1.40607 * 121.53659 * 359.97438 * 7 6 5 10 10 C 1.47760 * 120.26519 * 179.97438 * 9 7 6 11 11 O 1.21556 * 120.00153 * 305.26235 * 10 9 7 12 12 N 1.34782 * 119.99626 * 125.26614 * 10 9 7 13 13 C 1.46497 * 120.00100 * 354.49351 * 12 10 9 14 14 C 1.50702 * 109.47304 * 275.16426 * 13 12 10 15 15 H 1.08010 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00575 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00307 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99674 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.46988 * 89.99575 * 18 16 14 20 20 H 1.48495 * 109.47004 * 209.99745 * 18 16 14 21 21 H 1.48497 * 109.47148 * 330.00169 * 18 16 14 22 22 C 1.46497 * 119.99638 * 174.49667 * 12 10 9 23 23 C 1.50701 * 109.47203 * 90.00014 * 22 12 10 24 24 C 1.38226 * 119.61981 * 94.97560 * 23 22 12 25 25 C 1.38630 * 119.16083 * 179.79026 * 24 23 22 26 26 C 1.38673 * 118.42058 * 0.47067 * 25 24 23 27 27 C 1.38183 * 119.16046 * 359.50923 * 26 25 24 28 28 N 1.31850 * 119.61545 * 274.99684 * 23 22 12 29 29 C 1.39004 * 119.46158 * 0.25454 * 9 7 6 30 30 C 1.40533 * 117.96787 * 359.50886 * 29 9 7 31 31 C 1.36145 * 119.58474 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46815 * 269.97737 * 1 2 3 33 33 H 1.08999 * 109.46920 * 29.97358 * 1 2 3 34 34 H 1.08993 * 109.46869 * 149.97825 * 1 2 3 35 35 H 1.07998 * 119.45387 * 0.05155 * 3 2 1 36 36 H 1.07997 * 120.09126 * 180.02562 * 4 3 2 37 37 H 1.09001 * 109.47071 * 264.93714 * 8 7 6 38 38 H 1.09005 * 109.47240 * 24.93534 * 8 7 6 39 39 H 1.09001 * 109.47089 * 144.93503 * 8 7 6 40 40 H 1.09001 * 109.47555 * 35.16208 * 13 12 10 41 41 H 1.08996 * 109.47076 * 155.16717 * 13 12 10 42 42 H 0.97003 * 119.99734 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.47582 * 329.99704 * 22 12 10 44 44 H 1.09007 * 109.47062 * 209.99615 * 22 12 10 45 45 H 1.07995 * 120.42109 * 0.02562 * 24 23 22 46 46 H 1.08002 * 120.79090 * 180.23839 * 25 24 23 47 47 H 1.07997 * 120.42205 * 179.78091 * 26 25 24 48 48 H 1.08003 * 119.61632 * 180.25240 * 27 26 25 49 49 H 1.08003 * 121.01960 * 179.74998 * 29 9 7 50 50 H 1.07995 * 120.18927 * 359.95427 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2118 0.0000 4 6 3.5559 1.2475 0.0005 5 6 4.2863 0.0470 0.0000 6 7 5.6245 0.0588 -0.0001 7 6 6.3219 -1.0478 -0.0011 8 6 7.8268 -0.9692 -0.0005 9 6 5.7002 -2.3089 -0.0017 10 6 6.5156 -3.5412 -0.0034 11 8 7.3571 -3.7120 -0.8638 12 7 6.3261 -4.4759 0.9490 13 6 5.3990 -4.2186 2.0537 14 6 6.1123 -3.4574 3.1413 15 1 7.1523 -3.1916 3.0214 16 6 5.4373 -3.0996 4.2890 17 7 6.0600 -2.4358 5.2383 18 14 3.6384 -3.5588 4.4961 19 1 3.5391 -4.8886 5.1496 20 1 2.9617 -2.5410 5.3394 21 1 2.9846 -3.6120 3.1639 22 6 7.0474 -5.7491 0.8794 23 6 8.3563 -5.6258 1.6162 24 6 8.4375 -6.0270 2.9364 25 6 9.6473 -5.9135 3.6037 26 6 10.7326 -5.3892 2.9180 27 6 10.5759 -5.0095 1.5986 28 7 9.4106 -5.1362 0.9940 29 6 4.3124 -2.3870 -0.0066 30 6 3.5846 -1.1848 -0.0001 31 6 2.1792 -1.1840 -0.0005 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3633 0.8902 -0.5134 34 1 -0.3633 -0.8897 -0.5141 35 1 1.6393 2.1379 0.0008 36 1 4.0726 2.1958 0.0009 37 1 8.1947 -1.0397 -1.0241 38 1 8.1409 -0.0202 0.4340 39 1 8.2333 -1.7910 0.5891 40 1 4.5562 -3.6300 1.6912 41 1 5.0360 -5.1662 2.4516 42 1 5.5849 -2.1837 6.0455 43 1 7.2398 -6.0013 -0.1634 44 1 6.4450 -6.5335 1.3378 45 1 7.5704 -6.4274 3.4406 46 1 9.7414 -6.2226 4.6343 47 1 11.6894 -5.2830 3.4075 48 1 11.4173 -4.6041 1.0563 49 1 3.8086 -3.3424 -0.0112 50 1 1.6355 -2.1171 -0.0002 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069697749.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:37 Heat of formation + Delta-G solvation = 42.326443 kcal Electronic energy + Delta-G solvation = -34724.192253 eV Core-core repulsion = 30487.581473 eV Total energy + Delta-G solvation = -4236.610781 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.169 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.15300 -41.16873 -40.29717 -38.42828 -36.94429 -34.76606 -34.58199 -33.79831 -33.30621 -32.75556 -31.50212 -30.16908 -30.02183 -27.74474 -26.79367 -25.61656 -24.50360 -24.12170 -23.35913 -23.04705 -22.71303 -20.76588 -19.26690 -19.00186 -18.14281 -17.83661 -17.57977 -17.17969 -17.06439 -16.52842 -16.48862 -16.01916 -15.86007 -15.49628 -15.43784 -15.03944 -14.94655 -14.66298 -14.51686 -14.37338 -14.20087 -14.09980 -13.98174 -13.86819 -13.71171 -13.54461 -13.25727 -13.24606 -13.04657 -12.75392 -12.63809 -12.58322 -12.37393 -12.26553 -12.09007 -11.90501 -11.73369 -11.43288 -11.11248 -10.76691 -10.68870 -10.49379 -10.31668 -9.86689 -9.63004 -9.44499 -9.10554 -8.27065 -6.31383 -0.70405 -0.32485 0.23483 0.49458 0.90667 1.33938 1.36928 1.44514 1.53818 1.85539 2.30223 2.33067 3.01631 3.04056 3.09091 3.14583 3.40545 3.50455 3.59135 3.65395 3.81919 3.86810 3.97664 4.06338 4.11873 4.21928 4.27793 4.33226 4.34995 4.47799 4.49185 4.56791 4.58038 4.63666 4.67817 4.74249 4.78533 4.81887 4.83678 4.89926 4.90956 4.93404 5.02239 5.05888 5.26629 5.28813 5.31009 5.35733 5.44851 5.50593 5.56448 5.62329 5.89114 5.90550 6.18317 6.48414 6.72335 6.85033 7.17084 7.20758 7.32826 8.89269 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.010140 B = 0.003654 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.773978 B = 7660.771742 C = 8957.911785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.089 4.089 3 C -0.081 4.081 4 C -0.114 4.114 5 C 0.111 3.889 6 N -0.498 5.498 7 C 0.183 3.817 8 C -0.088 4.088 9 C -0.174 4.174 10 C 0.570 3.430 11 O -0.551 6.551 12 N -0.581 5.581 13 C 0.207 3.793 14 C -0.514 4.514 15 H 0.022 0.978 16 C 0.021 3.979 17 N -0.942 5.942 18 Si 0.925 3.075 19 H -0.256 1.256 20 H -0.294 1.294 21 H -0.233 1.233 22 C 0.168 3.832 23 C 0.098 3.902 24 C -0.146 4.146 25 C -0.089 4.089 26 C -0.171 4.171 27 C 0.072 3.928 28 N -0.491 5.491 29 C -0.020 4.020 30 C -0.121 4.121 31 C -0.101 4.101 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.166 0.834 36 H 0.142 0.858 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.046 0.954 41 H 0.059 0.941 42 H 0.263 0.737 43 H 0.090 0.910 44 H 0.121 0.879 45 H 0.138 0.862 46 H 0.151 0.849 47 H 0.161 0.839 48 H 0.169 0.831 49 H 0.164 0.836 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.372 -2.176 -7.628 11.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.089 4.089 3 C -0.101 4.101 4 C -0.133 4.133 5 C -0.010 4.010 6 N -0.208 5.208 7 C 0.031 3.969 8 C -0.145 4.145 9 C -0.180 4.180 10 C 0.358 3.642 11 O -0.430 6.430 12 N -0.311 5.311 13 C 0.086 3.914 14 C -0.553 4.553 15 H 0.040 0.960 16 C -0.178 4.178 17 N -0.582 5.582 18 Si 0.748 3.252 19 H -0.180 1.180 20 H -0.221 1.221 21 H -0.156 1.156 22 C 0.045 3.955 23 C -0.041 4.041 24 C -0.167 4.167 25 C -0.115 4.115 26 C -0.191 4.191 27 C -0.086 4.086 28 N -0.201 5.201 29 C -0.046 4.046 30 C -0.123 4.123 31 C -0.119 4.119 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.183 0.817 36 H 0.160 0.840 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.108 0.892 44 H 0.139 0.861 45 H 0.156 0.844 46 H 0.169 0.831 47 H 0.179 0.821 48 H 0.186 0.814 49 H 0.182 0.818 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.715 -1.104 -8.791 11.748 hybrid contribution -0.099 -0.791 1.836 2.001 sum -7.814 -1.894 -6.955 10.631 Atomic orbital electron populations 1.20890 0.87863 1.04499 1.03445 1.20119 0.98461 0.92232 0.98108 1.21250 0.92988 0.99429 0.96414 1.20989 0.94694 0.96228 1.01387 1.19421 0.89145 0.94427 0.98023 1.67736 1.07663 1.29909 1.15473 1.21414 0.97331 0.87156 0.91032 1.20588 0.88290 1.02460 1.03191 1.20691 0.95330 0.94750 1.07185 1.18060 0.82164 0.82589 0.81421 1.90736 1.34482 1.78399 1.39381 1.47803 1.43277 1.15842 1.24215 1.19948 0.89269 0.97735 0.84451 1.21279 0.97233 1.35396 1.01348 0.95988 1.25685 1.02500 0.94438 0.95153 1.70067 1.38879 1.40727 1.08527 0.86034 0.80128 0.78795 0.80215 1.18027 1.22051 1.15631 1.20425 0.88205 0.85725 1.01176 1.21680 0.94810 0.94974 0.92634 1.22092 0.99145 1.00550 0.94880 1.21878 0.92575 0.96250 1.00790 1.22414 1.01026 0.99854 0.95817 1.23131 0.95125 0.96904 0.93403 1.67519 1.00018 1.12243 1.40298 1.22055 0.91854 0.99194 0.91478 1.18947 0.96193 0.93061 1.04089 1.21173 0.90756 1.00245 0.99769 0.90224 0.89442 0.90191 0.81689 0.83985 0.88990 0.90168 0.93193 0.93628 0.92348 0.92770 0.89168 0.86072 0.84367 0.83089 0.82133 0.81385 0.81814 0.82900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 9.99 71.24 0.71 -0.72 16 2 C -0.09 -1.90 5.85 -20.09 -0.12 -2.01 16 3 C -0.08 -1.77 9.58 22.05 0.21 -1.56 16 4 C -0.11 -3.32 9.97 22.34 0.22 -3.10 16 5 C 0.11 4.11 6.61 40.27 0.27 4.38 16 6 N -0.50 -20.79 10.20 -175.85 -1.79 -22.58 16 7 C 0.18 7.95 6.82 43.29 0.30 8.24 16 8 C -0.09 -3.62 9.12 71.23 0.65 -2.97 16 9 C -0.17 -7.30 4.97 -20.00 -0.10 -7.40 16 10 C 0.57 24.53 6.01 86.76 0.52 25.05 16 11 O -0.55 -25.54 15.81 -3.89 -0.06 -25.60 16 12 N -0.58 -23.32 2.45 -834.02 -2.05 -25.36 16 13 C 0.21 8.65 4.05 85.63 0.35 9.00 16 14 C -0.51 -27.07 9.90 25.60 0.25 -26.82 16 15 H 0.02 1.38 8.06 -2.91 -0.02 1.36 16 16 C 0.02 1.11 5.47 84.65 0.46 1.58 16 17 N -0.94 -56.46 13.96 21.44 0.30 -56.16 16 18 Si 0.93 39.40 27.47 68.60 1.88 41.29 16 19 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 20 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.23 -8.71 6.54 99.48 0.65 -8.06 16 22 C 0.17 5.85 5.71 85.63 0.49 6.34 16 23 C 0.10 3.70 6.36 42.55 0.27 3.97 16 24 C -0.15 -5.15 9.72 22.36 0.22 -4.93 16 25 C -0.09 -2.80 10.18 22.47 0.23 -2.57 16 26 C -0.17 -5.04 10.11 22.36 0.23 -4.81 16 27 C 0.07 2.39 11.18 84.67 0.95 3.33 16 28 N -0.49 -19.46 10.27 -183.88 -1.89 -21.35 16 29 C -0.02 -0.71 7.49 23.01 0.17 -0.54 16 30 C -0.12 -4.12 5.74 -21.29 -0.12 -4.24 16 31 C -0.10 -2.60 9.38 22.34 0.21 -2.39 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 0.81 8.08 -2.39 -0.02 0.79 16 34 H 0.08 0.86 8.07 -2.39 -0.02 0.85 16 35 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 37 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 38 H 0.08 3.08 8.14 -2.38 -0.02 3.06 16 39 H 0.05 2.31 7.12 -2.39 -0.02 2.30 16 40 H 0.05 1.86 3.60 -2.39 -0.01 1.86 16 41 H 0.06 2.16 7.26 -2.39 -0.02 2.14 16 42 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 43 H 0.09 3.15 7.50 -2.39 -0.02 3.13 16 44 H 0.12 3.30 7.76 -2.38 -0.02 3.29 16 45 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 46 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 47 H 0.16 3.49 8.06 -2.91 -0.02 3.46 16 48 H 0.17 4.59 8.06 -2.91 -0.02 4.57 16 49 H 0.16 4.85 7.38 -2.91 -0.02 4.82 16 50 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -77.85 419.09 3.66 -74.19 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: 0.91 Total: 37.75 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 6.36 Total: -2.17 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -5.43 Total: -125.46 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.06 Total: -25.60 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.88 Total: 41.29 kcal Total: -77.85 3.66 -74.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069697749.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.516 kcal (2) G-P(sol) polarization free energy of solvation -77.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds