Wall clock time and date at job start Tue Mar 31 2020 05:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46786 * 2 1 4 4 C 1.50700 * 109.47203 * 119.99628 * 2 1 3 5 5 N 1.29937 * 126.28868 * 299.97762 * 4 2 1 6 6 O 1.21305 * 110.25310 * 179.97438 * 5 4 2 7 7 C 1.33648 * 109.80738 * 0.02562 * 6 5 4 8 8 C 1.50695 * 126.55032 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47046 * 270.02124 * 8 7 6 10 10 C 1.53003 * 109.47267 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47180 * 179.97438 * 10 9 8 12 12 O 1.21291 * 119.99975 * 359.73243 * 11 10 9 13 13 N 1.34773 * 120.00223 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99595 * 355.23730 * 13 11 10 15 15 C 1.50699 * 109.47044 * 89.99737 * 14 13 11 16 16 H 1.08002 * 120.00365 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00052 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00091 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99836 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46848 * 90.00040 * 19 17 15 21 21 H 1.48494 * 109.47110 * 209.99678 * 19 17 15 22 22 H 1.48494 * 109.47227 * 330.00171 * 19 17 15 23 23 C 1.40025 * 120.00425 * 175.23023 * 13 11 10 24 24 C 1.38853 * 120.04754 * 291.92039 * 23 13 11 25 25 C 1.38113 * 119.95158 * 179.76735 * 24 23 13 26 26 C 1.38462 * 120.04914 * 0.50297 * 25 24 23 27 27 F 1.35104 * 119.96021 * 179.72524 * 26 25 24 28 28 C 1.38482 * 120.09057 * 359.75098 * 26 25 24 29 29 C 1.38106 * 120.04300 * 359.97438 * 28 26 25 30 30 N 1.31129 * 106.89812 * 0.22193 * 7 6 5 31 31 H 1.09004 * 109.47271 * 299.99990 * 1 2 3 32 32 H 1.08997 * 109.47139 * 59.99769 * 1 2 3 33 33 H 1.08998 * 109.47244 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47310 * 240.00024 * 2 1 3 35 35 H 1.08994 * 109.47176 * 59.99942 * 3 2 1 36 36 H 1.09002 * 109.46720 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.47189 * 299.99599 * 3 2 1 38 38 H 1.08999 * 109.47119 * 150.02148 * 8 7 6 39 39 H 1.08999 * 109.47241 * 30.01647 * 8 7 6 40 40 H 1.08999 * 109.47141 * 60.00038 * 9 8 7 41 41 H 1.09003 * 109.47206 * 299.99848 * 9 8 7 42 42 H 1.09008 * 109.46747 * 60.00322 * 10 9 8 43 43 H 1.08996 * 109.47345 * 300.00485 * 10 9 8 44 44 H 1.09004 * 109.46753 * 209.99475 * 14 13 11 45 45 H 1.08992 * 109.47475 * 329.99597 * 14 13 11 46 46 H 0.97002 * 120.00049 * 180.02562 * 18 17 15 47 47 H 1.07996 * 120.02110 * 0.02562 * 24 23 13 48 48 H 1.08001 * 119.97196 * 180.23035 * 25 24 23 49 49 H 1.07995 * 119.97788 * 179.97438 * 28 26 25 50 50 H 1.08004 * 120.02306 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7953 -0.3743 2.4631 6 8 2.3414 -1.1476 3.2216 7 6 2.9991 -2.0783 2.5235 8 6 3.8058 -3.2196 3.0870 9 6 5.2567 -2.7731 3.2780 10 6 6.0757 -3.9316 3.8507 11 6 7.5049 -3.4920 4.0382 12 8 7.8370 -2.3647 3.7383 13 7 8.4152 -4.3530 4.5346 14 6 7.9956 -5.6810 4.9893 15 6 8.0741 -6.6533 3.8406 16 1 8.4032 -6.3158 2.8689 17 6 7.7258 -7.9738 4.0301 18 7 7.7939 -8.8222 3.0276 19 14 7.1573 -8.5579 5.7110 20 1 5.6828 -8.4127 5.8127 21 1 7.5277 -9.9846 5.8907 22 1 7.8090 -7.7405 6.7656 23 6 9.7620 -3.9784 4.6157 24 6 10.5044 -3.7979 3.4563 25 6 11.8314 -3.4238 3.5384 26 6 12.4243 -3.2388 4.7759 27 9 13.7239 -2.8782 4.8543 28 6 11.6870 -3.4234 5.9336 29 6 10.3584 -3.7920 5.8558 30 7 2.8127 -1.8056 1.2545 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.6766 1.9564 0.8899 36 1 3.1300 1.4426 0.0005 37 1 1.6767 1.9564 -0.8900 38 1 3.7730 -4.0631 2.3974 39 1 3.3886 -3.5197 4.0482 40 1 5.2895 -1.9297 3.9676 41 1 5.6740 -2.4730 2.3168 42 1 6.0430 -4.7754 3.1613 43 1 5.6583 -4.2314 4.8119 44 1 8.6524 -6.0142 5.7929 45 1 6.9700 -5.6326 5.3549 46 1 7.5484 -9.7512 3.1608 47 1 10.0434 -3.9459 2.4909 48 1 12.4081 -3.2797 2.6368 49 1 12.1514 -3.2791 6.8979 50 1 9.7838 -3.9363 6.7588 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069704414.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:42 Heat of formation + Delta-G solvation = -1.852942 kcal Electronic energy + Delta-G solvation = -33219.526879 eV Core-core repulsion = 28550.231112 eV Total energy + Delta-G solvation = -4669.295767 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.175 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -48.68769 -45.65150 -40.11196 -38.13349 -37.04521 -35.79010 -35.18285 -34.09909 -32.67534 -31.75289 -30.94010 -29.80234 -28.22892 -27.56186 -27.40607 -24.73620 -23.99689 -23.16179 -22.71248 -22.37935 -21.44358 -20.17173 -18.95833 -18.08212 -17.66964 -17.48156 -17.25388 -16.80229 -16.28483 -15.98375 -15.59078 -15.36632 -15.28485 -15.10871 -14.50491 -14.36099 -14.15620 -13.86617 -13.76244 -13.40442 -13.33788 -13.08854 -12.95885 -12.72319 -12.61020 -12.57648 -12.32521 -12.13720 -11.98261 -11.91278 -11.85859 -11.79693 -11.45991 -11.38451 -11.28650 -11.20113 -11.01478 -10.87633 -10.84128 -10.66022 -10.42328 -9.93664 -9.77814 -9.42617 -8.88426 -8.83422 -8.67417 -7.81287 -6.32235 -4.35526 1.06985 1.34883 1.47937 2.14246 2.72902 3.05892 3.08282 3.16570 3.19190 3.40782 3.54023 3.83219 3.91706 4.16153 4.47236 4.54863 4.69423 4.69843 4.79649 4.89853 4.97178 4.97455 5.02787 5.04460 5.24670 5.25536 5.36244 5.43163 5.46350 5.47588 5.50831 5.53433 5.58108 5.61937 5.72719 5.76117 5.82174 5.83904 5.91987 5.99692 6.09417 6.21459 6.29002 6.31222 6.37933 6.42168 6.45493 6.72029 6.90557 7.27984 7.36073 7.83822 8.09940 8.23338 8.64599 8.73906 9.25332 10.79962 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.007812 B = 0.002230 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3583.399672 B =12552.683567 C =15140.487439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.004 4.004 3 C -0.145 4.145 4 C 0.174 3.826 5 N -0.386 5.386 6 O 0.074 5.926 7 C 0.194 3.806 8 C -0.031 4.031 9 C -0.099 4.099 10 C -0.135 4.135 11 C 0.525 3.475 12 O -0.554 6.554 13 N -0.557 5.557 14 C 0.209 3.791 15 C -0.544 4.544 16 H 0.080 0.920 17 C 0.080 3.920 18 N -0.886 5.886 19 Si 0.869 3.131 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.264 1.264 23 C 0.165 3.835 24 C -0.074 4.074 25 C -0.143 4.143 26 C 0.082 3.918 27 F -0.146 7.146 28 C -0.145 4.145 29 C -0.099 4.099 30 N -0.482 5.482 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.117 0.883 43 H 0.096 0.904 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.268 0.732 47 H 0.133 0.867 48 H 0.134 0.866 49 H 0.134 0.866 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.725 12.544 0.467 14.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 C -0.203 4.203 4 C -0.099 4.099 5 N -0.094 5.094 6 O 0.016 5.984 7 C -0.026 4.026 8 C -0.070 4.070 9 C -0.138 4.138 10 C -0.175 4.175 11 C 0.315 3.685 12 O -0.433 6.433 13 N -0.285 5.285 14 C 0.089 3.911 15 C -0.583 4.583 16 H 0.098 0.902 17 C -0.125 4.125 18 N -0.523 5.523 19 Si 0.695 3.305 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.189 1.189 23 C 0.073 3.927 24 C -0.093 4.093 25 C -0.162 4.162 26 C 0.062 3.938 27 F -0.125 7.125 28 C -0.165 4.165 29 C -0.118 4.118 30 N -0.215 5.215 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.135 0.865 43 H 0.114 0.886 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.078 0.922 47 H 0.151 0.849 48 H 0.152 0.848 49 H 0.152 0.848 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.027 13.553 0.048 15.752 hybrid contribution 0.090 -0.871 0.937 1.282 sum -7.937 12.683 0.985 14.994 Atomic orbital electron populations 1.21842 0.92957 1.02549 1.02878 1.19553 0.96320 0.95417 0.91147 1.21850 1.01655 0.93966 1.02859 1.25821 0.96605 0.92950 0.94572 1.74548 1.17981 1.14040 1.02863 1.85295 1.47926 1.29824 1.35337 1.28907 0.93972 0.93840 0.85895 1.20397 0.93113 0.90600 1.02931 1.21334 0.90847 0.98374 1.03266 1.21625 0.91518 1.00032 1.04303 1.20578 0.87841 0.84204 0.75902 1.90667 1.81592 1.19924 1.51078 1.45660 1.04099 1.16639 1.62069 1.19984 0.95893 0.78502 0.96683 1.21280 1.47027 0.92897 0.97053 0.90195 1.24845 0.94678 0.96390 0.96565 1.69875 1.46993 1.04361 1.31057 0.86967 0.79734 0.78979 0.84827 1.19639 1.20802 1.18869 1.17571 0.85016 0.97393 0.92680 1.21140 0.92535 0.96745 0.98908 1.20958 0.95717 1.03089 0.96474 1.17637 0.78618 1.02847 0.94648 1.91460 1.34162 1.89613 1.97246 1.20874 0.94457 1.03657 0.97493 1.21047 0.94348 0.98977 0.97468 1.71947 1.17093 1.14261 1.18214 0.91922 0.91093 0.92288 0.88016 0.91912 0.92163 0.91088 0.86554 0.87689 0.90773 0.90268 0.86463 0.88599 0.94518 0.94495 0.92194 0.84937 0.84788 0.84841 0.85043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.18 37.16 0.34 -0.79 16 2 C 0.00 -0.04 3.39 -91.77 -0.31 -0.35 16 3 C -0.15 -1.21 9.18 37.16 0.34 -0.87 16 4 C 0.17 2.22 6.72 -156.38 -1.05 1.17 16 5 N -0.39 -5.21 12.16 30.90 0.38 -4.84 16 6 O 0.07 0.96 11.31 18.09 0.20 1.16 16 7 C 0.19 2.40 7.77 -13.06 -0.10 2.30 16 8 C -0.03 -0.32 5.84 -27.89 -0.16 -0.48 16 9 C -0.10 -1.23 4.49 -26.73 -0.12 -1.35 16 10 C -0.14 -1.91 4.37 -27.88 -0.12 -2.03 16 11 C 0.52 9.40 7.53 -10.99 -0.08 9.32 16 12 O -0.55 -11.15 15.74 5.55 0.09 -11.07 16 13 N -0.56 -10.42 2.51 -114.71 -0.29 -10.71 16 14 C 0.21 4.14 3.95 -5.19 -0.02 4.12 16 15 C -0.54 -13.08 9.71 -34.44 -0.33 -13.41 16 16 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 17 C 0.08 1.99 5.47 -17.82 -0.10 1.90 16 18 N -0.89 -24.25 13.96 55.43 0.77 -23.48 16 19 Si 0.87 18.29 27.47 -169.99 -4.67 13.62 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.26 -5.25 6.54 56.52 0.37 -4.88 16 23 C 0.16 3.00 4.75 -83.66 -0.40 2.60 16 24 C -0.07 -1.30 9.55 -39.40 -0.38 -1.67 16 25 C -0.14 -2.22 10.02 -39.54 -0.40 -2.61 16 26 C 0.08 1.24 7.30 -39.41 -0.29 0.96 16 27 F -0.15 -2.16 17.27 2.25 0.04 -2.13 16 28 C -0.15 -2.09 10.02 -39.54 -0.40 -2.49 16 29 C -0.10 -1.56 9.68 -39.40 -0.38 -1.94 16 30 N -0.48 -6.65 11.55 -9.87 -0.11 -6.76 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 41 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 42 H 0.12 1.77 7.91 -51.92 -0.41 1.36 16 43 H 0.10 1.15 7.26 -51.93 -0.38 0.78 16 44 H 0.04 0.74 6.91 -51.93 -0.36 0.38 16 45 H 0.04 0.66 5.90 -51.93 -0.31 0.36 16 46 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 47 H 0.13 2.37 8.06 -52.49 -0.42 1.95 16 48 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 49 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 50 H 0.13 1.84 8.06 -52.48 -0.42 1.41 16 LS Contribution 427.68 15.07 6.45 6.45 Total: -1.00 -30.41 427.68 -8.48 -38.89 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.38 Total: 4.50 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -3.96 Total: -5.64 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.75 Total: -45.78 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.29 Total: -9.90 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -4.67 Total: 13.62 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -30.41 -8.48 -38.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069704414.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.036 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds