Wall clock time and date at job start Tue Mar 31 2020 05:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46786 * 2 1 4 4 C 1.50700 * 109.47203 * 119.99628 * 2 1 3 5 5 N 1.29937 * 126.28868 * 299.97762 * 4 2 1 6 6 O 1.21305 * 110.25310 * 179.97438 * 5 4 2 7 7 C 1.33648 * 109.80738 * 0.02562 * 6 5 4 8 8 C 1.50695 * 126.55032 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47046 * 270.02124 * 8 7 6 10 10 C 1.53003 * 109.47267 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47180 * 179.97438 * 10 9 8 12 12 O 1.21291 * 119.99975 * 359.73243 * 11 10 9 13 13 N 1.34773 * 120.00223 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99595 * 355.23730 * 13 11 10 15 15 C 1.50699 * 109.47044 * 89.99737 * 14 13 11 16 16 H 1.08002 * 120.00365 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00052 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00091 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99836 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46848 * 90.00040 * 19 17 15 21 21 H 1.48494 * 109.47110 * 209.99678 * 19 17 15 22 22 H 1.48494 * 109.47227 * 330.00171 * 19 17 15 23 23 C 1.40025 * 120.00425 * 175.23023 * 13 11 10 24 24 C 1.38853 * 120.04754 * 291.92039 * 23 13 11 25 25 C 1.38113 * 119.95158 * 179.76735 * 24 23 13 26 26 C 1.38462 * 120.04914 * 0.50297 * 25 24 23 27 27 F 1.35104 * 119.96021 * 179.72524 * 26 25 24 28 28 C 1.38482 * 120.09057 * 359.75098 * 26 25 24 29 29 C 1.38106 * 120.04300 * 359.97438 * 28 26 25 30 30 N 1.31129 * 106.89812 * 0.22193 * 7 6 5 31 31 H 1.09004 * 109.47271 * 299.99990 * 1 2 3 32 32 H 1.08997 * 109.47139 * 59.99769 * 1 2 3 33 33 H 1.08998 * 109.47244 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47310 * 240.00024 * 2 1 3 35 35 H 1.08994 * 109.47176 * 59.99942 * 3 2 1 36 36 H 1.09002 * 109.46720 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.47189 * 299.99599 * 3 2 1 38 38 H 1.08999 * 109.47119 * 150.02148 * 8 7 6 39 39 H 1.08999 * 109.47241 * 30.01647 * 8 7 6 40 40 H 1.08999 * 109.47141 * 60.00038 * 9 8 7 41 41 H 1.09003 * 109.47206 * 299.99848 * 9 8 7 42 42 H 1.09008 * 109.46747 * 60.00322 * 10 9 8 43 43 H 1.08996 * 109.47345 * 300.00485 * 10 9 8 44 44 H 1.09004 * 109.46753 * 209.99475 * 14 13 11 45 45 H 1.08992 * 109.47475 * 329.99597 * 14 13 11 46 46 H 0.97002 * 120.00049 * 180.02562 * 18 17 15 47 47 H 1.07996 * 120.02110 * 0.02562 * 24 23 13 48 48 H 1.08001 * 119.97196 * 180.23035 * 25 24 23 49 49 H 1.07995 * 119.97788 * 179.97438 * 28 26 25 50 50 H 1.08004 * 120.02306 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7953 -0.3743 2.4631 6 8 2.3414 -1.1476 3.2216 7 6 2.9991 -2.0783 2.5235 8 6 3.8058 -3.2196 3.0870 9 6 5.2567 -2.7731 3.2780 10 6 6.0757 -3.9316 3.8507 11 6 7.5049 -3.4920 4.0382 12 8 7.8370 -2.3647 3.7383 13 7 8.4152 -4.3530 4.5346 14 6 7.9956 -5.6810 4.9893 15 6 8.0741 -6.6533 3.8406 16 1 8.4032 -6.3158 2.8689 17 6 7.7258 -7.9738 4.0301 18 7 7.7939 -8.8222 3.0276 19 14 7.1573 -8.5579 5.7110 20 1 5.6828 -8.4127 5.8127 21 1 7.5277 -9.9846 5.8907 22 1 7.8090 -7.7405 6.7656 23 6 9.7620 -3.9784 4.6157 24 6 10.5044 -3.7979 3.4563 25 6 11.8314 -3.4238 3.5384 26 6 12.4243 -3.2388 4.7759 27 9 13.7239 -2.8782 4.8543 28 6 11.6870 -3.4234 5.9336 29 6 10.3584 -3.7920 5.8558 30 7 2.8127 -1.8056 1.2545 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.6766 1.9564 0.8899 36 1 3.1300 1.4426 0.0005 37 1 1.6767 1.9564 -0.8900 38 1 3.7730 -4.0631 2.3974 39 1 3.3886 -3.5197 4.0482 40 1 5.2895 -1.9297 3.9676 41 1 5.6740 -2.4730 2.3168 42 1 6.0430 -4.7754 3.1613 43 1 5.6583 -4.2314 4.8119 44 1 8.6524 -6.0142 5.7929 45 1 6.9700 -5.6326 5.3549 46 1 7.5484 -9.7512 3.1608 47 1 10.0434 -3.9459 2.4909 48 1 12.4081 -3.2797 2.6368 49 1 12.1514 -3.2791 6.8979 50 1 9.7838 -3.9363 6.7588 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069704414.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:41 Heat of formation + Delta-G solvation = -18.440983 kcal Electronic energy + Delta-G solvation = -33220.246191 eV Core-core repulsion = 28550.231112 eV Total energy + Delta-G solvation = -4670.015079 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.175 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -49.88996 -46.63537 -41.48795 -39.42531 -37.89843 -36.84070 -36.62094 -35.04374 -34.50461 -32.77989 -32.17682 -31.15244 -29.65560 -28.70849 -28.19982 -25.63813 -25.13275 -24.63955 -23.89098 -23.70660 -22.57837 -21.02184 -20.28267 -19.09505 -19.06665 -18.76255 -18.61209 -18.14399 -17.69511 -17.33585 -16.68715 -16.56479 -16.26894 -16.11936 -15.89326 -15.50661 -15.22321 -15.09067 -14.70452 -14.56530 -14.46156 -14.44348 -14.24955 -14.04962 -13.76526 -13.65087 -13.45181 -13.23707 -13.21845 -12.97384 -12.86468 -12.69584 -12.62775 -12.53509 -12.35153 -12.24348 -12.18325 -12.09775 -11.96385 -11.89845 -11.70519 -11.65024 -10.94803 -10.84382 -10.70572 -10.11606 -10.08232 -9.21666 -8.23616 -6.31821 0.06428 0.09840 0.23828 1.17036 1.46479 1.49804 1.57636 1.64974 1.78720 2.16237 2.40651 2.55466 2.59249 3.01985 3.11007 3.24461 3.64897 3.72050 3.77191 3.89308 3.93795 4.00705 4.01262 4.10251 4.22484 4.23922 4.37329 4.41073 4.45660 4.53887 4.61557 4.65732 4.71578 4.75266 4.80190 4.81493 4.87850 4.89232 4.92861 4.94701 5.01199 5.08245 5.12706 5.15812 5.18584 5.25031 5.28262 5.38453 5.48961 5.62684 5.98261 6.21258 6.52141 6.74073 7.12698 7.22866 7.35488 8.92319 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.007812 B = 0.002230 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3583.399672 B =12552.683567 C =15140.487439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.009 4.009 3 C -0.140 4.140 4 C 0.168 3.832 5 N -0.402 5.402 6 O 0.069 5.931 7 C 0.197 3.803 8 C -0.024 4.024 9 C -0.087 4.087 10 C -0.129 4.129 11 C 0.517 3.483 12 O -0.582 6.582 13 N -0.560 5.560 14 C 0.216 3.784 15 C -0.538 4.538 16 H 0.030 0.970 17 C 0.021 3.979 18 N -0.943 5.943 19 Si 0.936 3.064 20 H -0.251 1.251 21 H -0.295 1.295 22 H -0.237 1.237 23 C 0.132 3.868 24 C -0.099 4.099 25 C -0.144 4.144 26 C 0.079 3.921 27 F -0.142 7.142 28 C -0.134 4.134 29 C -0.100 4.100 30 N -0.510 5.510 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.106 0.894 35 H 0.054 0.946 36 H 0.046 0.954 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.141 0.859 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.106 0.894 43 H 0.129 0.871 44 H 0.045 0.955 45 H 0.069 0.931 46 H 0.267 0.733 47 H 0.112 0.888 48 H 0.151 0.849 49 H 0.169 0.831 50 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.599 13.088 3.138 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 C -0.198 4.198 4 C -0.105 4.105 5 N -0.112 5.112 6 O 0.013 5.987 7 C -0.023 4.023 8 C -0.063 4.063 9 C -0.127 4.127 10 C -0.168 4.168 11 C 0.309 3.691 12 O -0.462 6.462 13 N -0.287 5.287 14 C 0.095 3.905 15 C -0.576 4.576 16 H 0.049 0.951 17 C -0.178 4.178 18 N -0.582 5.582 19 Si 0.759 3.241 20 H -0.175 1.175 21 H -0.222 1.222 22 H -0.160 1.160 23 C 0.041 3.959 24 C -0.118 4.118 25 C -0.163 4.163 26 C 0.059 3.941 27 F -0.120 7.120 28 C -0.153 4.153 29 C -0.119 4.119 30 N -0.243 5.243 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.124 0.876 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.116 0.884 38 H 0.141 0.859 39 H 0.159 0.841 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.124 0.876 43 H 0.147 0.853 44 H 0.063 0.937 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.131 0.869 48 H 0.169 0.831 49 H 0.186 0.814 50 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.892 14.124 2.736 16.913 hybrid contribution 0.504 -0.975 -0.011 1.098 sum -8.388 13.149 2.724 15.833 Atomic orbital electron populations 1.21811 0.91539 1.02446 1.03762 1.19799 0.97468 0.95736 0.89950 1.21828 1.00799 0.93380 1.03800 1.26446 0.95961 0.92668 0.95378 1.74528 1.18839 1.14610 1.03223 1.85266 1.48107 1.29945 1.35357 1.29290 0.93510 0.93810 0.85686 1.20482 0.91181 0.89727 1.04890 1.21161 0.92012 0.97787 1.01702 1.21652 0.89486 0.99964 1.05735 1.21256 0.89110 0.83775 0.75004 1.90643 1.82315 1.21181 1.52093 1.45684 1.04621 1.16220 1.62179 1.19870 0.97722 0.77990 0.94868 1.21420 1.45675 0.93966 0.96548 0.95147 1.25752 0.94846 0.96393 1.00769 1.70056 1.49392 1.04777 1.34002 0.85886 0.80472 0.77793 0.79972 1.17465 1.22176 1.16023 1.17965 0.85147 0.98905 0.93861 1.21125 0.93716 0.98652 0.98348 1.21116 0.95012 1.02403 0.97807 1.17748 0.78864 1.02648 0.94816 1.91474 1.33824 1.89524 1.97218 1.21238 0.93784 1.01587 0.98650 1.21294 0.95031 0.98453 0.97147 1.71968 1.18029 1.15179 1.19169 0.92648 0.88544 0.92868 0.87562 0.92641 0.93434 0.88432 0.85937 0.84136 0.90833 0.92894 0.87592 0.85327 0.93712 0.91366 0.92391 0.86945 0.83111 0.81354 0.82789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.18 71.98 0.66 -1.34 16 2 C -0.01 -0.17 3.39 -11.54 -0.04 -0.21 16 3 C -0.14 -2.22 9.18 71.98 0.66 -1.56 16 4 C 0.17 4.30 6.72 138.46 0.93 5.23 16 5 N -0.40 -10.81 12.16 -60.32 -0.73 -11.54 16 6 O 0.07 1.76 11.31 74.79 0.85 2.61 16 7 C 0.20 4.77 7.77 88.38 0.69 5.46 16 8 C -0.02 -0.45 5.84 29.85 0.17 -0.28 16 9 C -0.09 -2.13 4.49 30.60 0.14 -2.00 16 10 C -0.13 -3.51 4.37 29.85 0.13 -3.38 16 11 C 0.52 18.53 7.53 87.66 0.66 19.19 16 12 O -0.58 -23.91 15.74 -3.06 -0.05 -23.96 16 13 N -0.56 -20.73 2.51 -635.23 -1.59 -22.33 16 14 C 0.22 8.18 3.95 85.63 0.34 8.51 16 15 C -0.54 -26.20 9.71 25.60 0.25 -25.95 16 16 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 17 C 0.02 1.07 5.47 84.66 0.46 1.54 16 18 N -0.94 -53.20 13.96 21.45 0.30 -52.90 16 19 Si 0.94 36.19 27.47 68.60 1.88 38.07 16 20 H -0.25 -8.85 7.11 99.48 0.71 -8.15 16 21 H -0.30 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.24 -8.09 6.54 99.48 0.65 -7.43 16 23 C 0.13 4.80 4.75 38.13 0.18 4.98 16 24 C -0.10 -3.61 9.55 22.39 0.21 -3.40 16 25 C -0.14 -4.48 10.02 22.29 0.22 -4.25 16 26 C 0.08 2.27 7.30 22.38 0.16 2.43 16 27 F -0.14 -3.91 17.27 44.97 0.78 -3.14 16 28 C -0.13 -3.48 10.02 22.30 0.22 -3.26 16 29 C -0.10 -2.95 9.68 22.39 0.22 -2.73 16 30 N -0.51 -14.12 11.55 -303.20 -3.50 -17.62 16 31 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 1.81 8.10 -2.39 -0.02 1.79 16 41 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 42 H 0.11 3.19 7.91 -2.38 -0.02 3.17 16 43 H 0.13 2.65 7.26 -2.39 -0.02 2.63 16 44 H 0.04 1.66 6.91 -2.39 -0.02 1.64 16 45 H 0.07 2.19 5.90 -2.39 -0.01 2.18 16 46 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 47 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 48 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 49 H 0.17 3.18 8.06 -2.91 -0.02 3.15 16 50 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -69.55 427.68 5.10 -64.45 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.90 Total: 27.38 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 6.27 Total: -1.02 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -5.53 Total: -104.39 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: 0.80 Total: -21.35 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.78 Total: -3.14 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 1.88 Total: 38.07 kcal Total: -69.55 5.10 -64.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069704414.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.011 kcal (2) G-P(sol) polarization free energy of solvation -69.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds