Wall clock time and date at job start Tue Mar 31 2020 07:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00154 * 2 1 4 4 C 1.53005 * 109.47390 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46911 * 65.00107 * 4 3 2 6 6 C 1.46505 * 120.00019 * 84.99994 * 5 4 3 7 7 C 1.50703 * 109.46960 * 84.01029 * 6 5 4 8 8 H 1.07996 * 119.99763 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99958 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00068 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99784 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47408 * 89.99996 * 11 9 7 13 13 H 1.48507 * 109.46774 * 209.99923 * 11 9 7 14 14 H 1.48503 * 109.47238 * 329.99645 * 11 9 7 15 15 S 1.65608 * 120.00219 * 265.00127 * 5 4 3 16 16 O 1.42097 * 106.39804 * 27.44546 * 15 5 4 17 17 O 1.42095 * 106.40178 * 160.36233 * 15 5 4 18 18 C 1.76196 * 107.21595 * 273.90629 * 15 5 4 19 19 C 1.38240 * 120.00668 * 14.51524 * 18 15 5 20 20 C 1.38222 * 120.01038 * 179.97438 * 19 18 15 21 21 C 1.38261 * 120.02033 * 0.02562 * 20 19 18 22 22 C 1.38199 * 120.00900 * 359.97438 * 21 20 19 23 23 C 1.38308 * 120.00360 * 194.24072 * 18 15 5 24 24 Br 1.89097 * 120.00913 * 0.02562 * 23 18 15 25 25 H 1.09000 * 109.46822 * 299.99930 * 1 2 3 26 26 H 1.09006 * 109.47189 * 59.99686 * 1 2 3 27 27 H 1.09001 * 109.47232 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47281 * 60.00537 * 3 2 1 29 29 H 1.09002 * 109.47497 * 300.00244 * 3 2 1 30 30 H 1.09003 * 109.47091 * 305.00541 * 4 3 2 31 31 H 1.08992 * 109.47326 * 185.00150 * 4 3 2 32 32 H 1.09000 * 109.47394 * 204.00963 * 6 5 4 33 33 H 1.08999 * 109.46980 * 324.01165 * 6 5 4 34 34 H 0.97003 * 119.99815 * 180.02562 * 10 9 7 35 35 H 1.07999 * 119.99463 * 359.97438 * 19 18 15 36 36 H 1.08000 * 119.98779 * 179.97438 * 20 19 18 37 37 H 1.07997 * 120.00016 * 179.97438 * 21 20 19 38 38 H 1.08006 * 120.00516 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.1808 1.3891 -2.4462 7 6 5.5594 1.9966 -2.4061 8 1 6.2170 1.7888 -1.5750 9 6 5.9810 2.8176 -3.4304 10 7 5.1803 3.0702 -4.4426 11 14 7.6900 3.5700 -3.3810 12 1 8.6521 2.6576 -4.0495 13 1 7.6759 4.8771 -4.0857 14 1 8.1006 3.7737 -1.9684 15 16 4.2413 -1.0688 -1.3192 16 8 3.3988 -1.6527 -0.3351 17 8 4.1953 -1.4272 -2.6935 18 6 5.8973 -1.3499 -0.7868 19 6 6.5942 -0.3480 -0.1376 20 6 7.8930 -0.5686 0.2806 21 6 8.4960 -1.7911 0.0493 22 6 7.8000 -2.7933 -0.5996 23 6 6.4981 -2.5749 -1.0133 24 35 5.5428 -3.9481 -1.8951 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6887 1.8464 0.8901 29 1 1.6886 1.8464 -0.8900 30 1 3.8515 0.5681 0.8409 31 1 3.9785 2.1764 0.0889 32 1 4.0827 0.7693 -3.3374 33 1 3.4344 2.1831 -2.4718 34 1 5.4770 3.6475 -5.1634 35 1 6.1237 0.6073 0.0429 36 1 8.4373 0.2146 0.7874 37 1 9.5110 -1.9630 0.3758 38 1 8.2710 -3.7484 -0.7799 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069739501.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:50 Heat of formation + Delta-G solvation = -74.517669 kcal Electronic energy + Delta-G solvation = -25513.012329 eV Core-core repulsion = 21722.814710 eV Total energy + Delta-G solvation = -3790.197619 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 377.013 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.06297 -37.74023 -36.34819 -35.53542 -35.03693 -32.64273 -32.41939 -31.23507 -29.48593 -29.19287 -26.75403 -25.76677 -23.20855 -23.15132 -22.40272 -21.51034 -18.60439 -17.47759 -16.91478 -16.37776 -16.20968 -15.84304 -15.57989 -15.11555 -15.03627 -14.63273 -14.46817 -14.24272 -13.61285 -13.46933 -13.18560 -12.71077 -12.56043 -12.24831 -11.95124 -11.72990 -11.50143 -11.33794 -11.30984 -11.20234 -11.08703 -11.00238 -10.80714 -10.63525 -10.46183 -10.43755 -10.12024 -9.94277 -9.81129 -9.27086 -9.24429 -8.71990 -8.52531 -8.12527 -6.14463 -4.21571 0.82825 1.11112 1.20911 1.53148 3.22240 3.28518 3.29791 3.47717 3.58327 4.16594 4.32439 4.38627 4.74640 4.88181 5.11193 5.19184 5.26958 5.36508 5.40675 5.44407 5.53439 5.58024 5.65110 5.69864 5.77194 5.88362 5.93566 5.95835 6.10851 6.18841 6.30687 6.47745 6.75821 7.28321 7.37903 7.53722 7.62770 7.81401 8.09348 8.81089 9.44678 10.93622 Molecular weight = 377.01amu Principal moments of inertia in cm(-1) A = 0.007993 B = 0.006055 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3502.386989 B = 4622.966806 C = 6612.060377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.037 3.963 4 C 0.129 3.871 5 N -0.978 5.978 6 C 0.243 3.757 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.068 3.932 10 N -0.886 5.886 11 Si 0.890 3.110 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.273 1.273 15 S 2.681 3.319 16 O -0.939 6.939 17 O -0.940 6.940 18 C -0.638 4.638 19 C -0.012 4.012 20 C -0.125 4.125 21 C -0.075 4.075 22 C -0.114 4.114 23 C -0.006 4.006 24 Br -0.035 7.035 25 H 0.034 0.966 26 H 0.037 0.963 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.042 0.958 34 H 0.265 0.735 35 H 0.149 0.851 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.947 -8.118 10.858 13.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.041 4.041 4 C 0.003 3.997 5 N -0.818 5.818 6 C 0.121 3.879 7 C -0.585 4.585 8 H 0.081 0.919 9 C -0.136 4.136 10 N -0.524 5.524 11 Si 0.717 3.283 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.198 1.198 15 S 2.765 3.235 16 O -0.929 6.929 17 O -0.931 6.931 18 C -0.721 4.721 19 C -0.031 4.031 20 C -0.144 4.144 21 C -0.093 4.093 22 C -0.134 4.134 23 C -0.087 4.087 24 Br 0.051 6.949 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.167 0.833 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.141 -9.341 10.082 13.745 hybrid contribution 1.857 1.354 0.257 2.312 sum 1.998 -7.987 10.339 13.217 Atomic orbital electron populations 1.22701 0.82387 1.02323 0.99262 1.88176 1.18414 1.26699 1.95198 1.23093 0.95082 0.85583 1.00391 1.21234 0.92057 1.00620 0.85834 1.57428 1.79962 1.25944 1.18439 1.19294 0.96877 0.90794 0.80944 1.21567 1.00018 1.29906 1.06995 0.91903 1.24916 0.97331 0.96219 0.95143 1.69925 1.35976 1.36871 1.09625 0.86631 0.84641 0.78751 0.78244 1.20490 1.21033 1.19774 1.02697 0.73323 0.73068 0.74402 1.93618 1.62014 1.75574 1.61673 1.93605 1.85769 1.81669 1.32010 1.31496 1.28807 0.99310 1.12492 1.21099 0.94300 0.96935 0.90782 1.21412 0.95345 0.97457 1.00215 1.21352 0.99540 0.92859 0.95591 1.21154 0.92576 1.00423 0.99291 1.21297 0.95901 0.92520 0.98963 1.96825 1.73387 1.47637 1.77031 0.94708 0.94486 0.90012 0.92953 0.92426 0.90753 0.88141 0.92598 0.94045 0.92522 0.83310 0.84689 0.84742 0.84500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.48 8.59 -55.46 -0.48 -6.95 16 3 C 0.04 0.58 6.28 37.16 0.23 0.81 16 4 C 0.13 2.13 4.94 -4.04 -0.02 2.11 16 5 N -0.98 -20.01 1.91 -115.66 -0.22 -20.23 16 6 C 0.24 5.86 5.43 -5.19 -0.03 5.83 16 7 C -0.55 -13.79 9.38 -34.44 -0.32 -14.11 16 8 H 0.06 1.48 5.80 -52.49 -0.30 1.17 16 9 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -24.89 13.29 55.43 0.74 -24.15 16 11 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 15 S 2.68 57.32 4.64 -107.50 -0.50 56.82 16 16 O -0.94 -20.37 15.12 -65.62 -0.99 -21.37 16 17 O -0.94 -22.88 14.94 -57.17 -0.85 -23.74 16 18 C -0.64 -12.22 5.83 -39.55 -0.23 -12.45 16 19 C -0.01 -0.20 8.82 -39.59 -0.35 -0.55 16 20 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16 21 C -0.07 -0.93 10.05 -39.59 -0.40 -1.33 16 22 C -0.11 -1.62 9.79 -39.56 -0.39 -2.01 16 23 C -0.01 -0.10 6.21 -39.52 -0.25 -0.35 16 24 Br -0.03 -0.61 31.21 -68.01 -2.12 -2.73 16 25 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.07 1.11 7.72 -51.93 -0.40 0.70 16 31 H 0.10 1.49 8.11 -51.93 -0.42 1.07 16 32 H 0.06 1.52 6.86 -51.93 -0.36 1.17 16 33 H 0.04 1.01 8.04 -51.93 -0.42 0.60 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 35 H 0.15 2.38 5.41 -52.49 -0.28 2.10 16 36 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 348.86 15.07 5.26 5.26 Total: -1.00 -32.67 348.86 -10.02 -42.69 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.70 Total: 0.11 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -1.13 Total: -20.96 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.52 Total: -44.38 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -2.32 Total: -52.05 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 57.32 SS G_CDS: -0.50 Total: 56.82 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -2.12 Total: -2.73 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.67 -10.02 -42.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069739501.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.832 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds