Wall clock time and date at job start Tue Mar 31 2020 07:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00154 * 2 1 4 4 C 1.53005 * 109.47390 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46911 * 65.00107 * 4 3 2 6 6 C 1.46505 * 120.00019 * 84.99994 * 5 4 3 7 7 C 1.50703 * 109.46960 * 84.01029 * 6 5 4 8 8 H 1.07996 * 119.99763 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99958 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00068 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99784 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47408 * 89.99996 * 11 9 7 13 13 H 1.48507 * 109.46774 * 209.99923 * 11 9 7 14 14 H 1.48503 * 109.47238 * 329.99645 * 11 9 7 15 15 S 1.65608 * 120.00219 * 265.00127 * 5 4 3 16 16 O 1.42097 * 106.39804 * 27.44546 * 15 5 4 17 17 O 1.42095 * 106.40178 * 160.36233 * 15 5 4 18 18 C 1.76196 * 107.21595 * 273.90629 * 15 5 4 19 19 C 1.38240 * 120.00668 * 14.51524 * 18 15 5 20 20 C 1.38222 * 120.01038 * 179.97438 * 19 18 15 21 21 C 1.38261 * 120.02033 * 0.02562 * 20 19 18 22 22 C 1.38199 * 120.00900 * 359.97438 * 21 20 19 23 23 C 1.38308 * 120.00360 * 194.24072 * 18 15 5 24 24 Br 1.89097 * 120.00913 * 0.02562 * 23 18 15 25 25 H 1.09000 * 109.46822 * 299.99930 * 1 2 3 26 26 H 1.09006 * 109.47189 * 59.99686 * 1 2 3 27 27 H 1.09001 * 109.47232 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47281 * 60.00537 * 3 2 1 29 29 H 1.09002 * 109.47497 * 300.00244 * 3 2 1 30 30 H 1.09003 * 109.47091 * 305.00541 * 4 3 2 31 31 H 1.08992 * 109.47326 * 185.00150 * 4 3 2 32 32 H 1.09000 * 109.47394 * 204.00963 * 6 5 4 33 33 H 1.08999 * 109.46980 * 324.01165 * 6 5 4 34 34 H 0.97003 * 119.99815 * 180.02562 * 10 9 7 35 35 H 1.07999 * 119.99463 * 359.97438 * 19 18 15 36 36 H 1.08000 * 119.98779 * 179.97438 * 20 19 18 37 37 H 1.07997 * 120.00016 * 179.97438 * 21 20 19 38 38 H 1.08006 * 120.00516 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.1808 1.3891 -2.4462 7 6 5.5594 1.9966 -2.4061 8 1 6.2170 1.7888 -1.5750 9 6 5.9810 2.8176 -3.4304 10 7 5.1803 3.0702 -4.4426 11 14 7.6900 3.5700 -3.3810 12 1 8.6521 2.6576 -4.0495 13 1 7.6759 4.8771 -4.0857 14 1 8.1006 3.7737 -1.9684 15 16 4.2413 -1.0688 -1.3192 16 8 3.3988 -1.6527 -0.3351 17 8 4.1953 -1.4272 -2.6935 18 6 5.8973 -1.3499 -0.7868 19 6 6.5942 -0.3480 -0.1376 20 6 7.8930 -0.5686 0.2806 21 6 8.4960 -1.7911 0.0493 22 6 7.8000 -2.7933 -0.5996 23 6 6.4981 -2.5749 -1.0133 24 35 5.5428 -3.9481 -1.8951 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6887 1.8464 0.8901 29 1 1.6886 1.8464 -0.8900 30 1 3.8515 0.5681 0.8409 31 1 3.9785 2.1764 0.0889 32 1 4.0827 0.7693 -3.3374 33 1 3.4344 2.1831 -2.4718 34 1 5.4770 3.6475 -5.1634 35 1 6.1237 0.6073 0.0429 36 1 8.4373 0.2146 0.7874 37 1 9.5110 -1.9630 0.3758 38 1 8.2710 -3.7484 -0.7799 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069739501.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:49 Heat of formation + Delta-G solvation = -95.876389 kcal Electronic energy + Delta-G solvation = -25513.938513 eV Core-core repulsion = 21722.814710 eV Total energy + Delta-G solvation = -3791.123802 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 377.013 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.21535 -39.04481 -38.05861 -37.10335 -36.74153 -34.55257 -33.64166 -32.40780 -30.98665 -30.40967 -28.47664 -26.99406 -24.90310 -24.37774 -23.61327 -22.99345 -20.07426 -18.97069 -18.59876 -18.14641 -17.58890 -17.06219 -16.93813 -16.48957 -16.42617 -16.18702 -15.84928 -15.46434 -15.13267 -14.63368 -14.52086 -14.46730 -13.98578 -13.51662 -13.43612 -13.26085 -13.03786 -12.98739 -12.88311 -12.79020 -12.55289 -12.40338 -12.26396 -12.09158 -12.02401 -11.88279 -11.74009 -11.60960 -11.31920 -10.55566 -10.47518 -10.44287 -9.92433 -9.79470 -8.14249 -6.28015 -0.50652 -0.36192 0.06348 0.26562 1.44303 1.46175 1.55004 1.99950 2.36508 2.44797 2.75913 3.05616 3.18389 3.56342 3.75987 3.90880 4.03283 4.16544 4.18911 4.26368 4.30156 4.40647 4.57068 4.58760 4.63524 4.69577 4.82294 4.87097 4.93458 5.01571 5.07115 5.21456 5.32770 5.48552 5.69563 5.77003 5.91930 6.10775 6.40997 6.83341 7.42141 8.94301 Molecular weight = 377.01amu Principal moments of inertia in cm(-1) A = 0.007993 B = 0.006055 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3502.386989 B = 4622.966806 C = 6612.060377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.402 6.402 3 C 0.034 3.966 4 C 0.118 3.882 5 N -0.979 5.979 6 C 0.259 3.741 7 C -0.545 4.545 8 H 0.083 0.917 9 C 0.010 3.990 10 N -0.929 5.929 11 Si 0.953 3.047 12 H -0.283 1.283 13 H -0.286 1.286 14 H -0.247 1.247 15 S 2.682 3.318 16 O -0.953 6.953 17 O -0.986 6.986 18 C -0.665 4.665 19 C -0.030 4.030 20 C -0.121 4.121 21 C -0.057 4.057 22 C -0.112 4.112 23 C -0.034 4.034 24 Br -0.051 7.051 25 H 0.062 0.938 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.014 0.986 33 H 0.030 0.970 34 H 0.264 0.736 35 H 0.151 0.849 36 H 0.174 0.826 37 H 0.186 0.814 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.937 -7.503 13.571 15.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.321 6.321 3 C -0.044 4.044 4 C -0.007 4.007 5 N -0.818 5.818 6 C 0.136 3.864 7 C -0.584 4.584 8 H 0.101 0.899 9 C -0.189 4.189 10 N -0.569 5.569 11 Si 0.778 3.222 12 H -0.209 1.209 13 H -0.212 1.212 14 H -0.170 1.170 15 S 2.772 3.228 16 O -0.943 6.943 17 O -0.976 6.976 18 C -0.753 4.753 19 C -0.050 4.050 20 C -0.140 4.140 21 C -0.075 4.075 22 C -0.132 4.132 23 C -0.115 4.115 24 Br 0.035 6.965 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.136 0.864 32 H 0.032 0.968 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.168 0.832 36 H 0.192 0.808 37 H 0.203 0.797 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.071 -8.722 12.823 15.809 hybrid contribution 0.962 1.106 -0.498 1.548 sum 4.033 -7.616 12.325 15.039 Atomic orbital electron populations 1.22900 0.80627 1.03139 1.00719 1.88122 1.20585 1.27952 1.95480 1.23178 0.94394 0.85217 1.01606 1.21612 0.93051 1.01601 0.84433 1.57212 1.80678 1.25210 1.18729 1.18821 0.96667 0.89838 0.81107 1.21955 1.00387 1.28832 1.07234 0.89942 1.25820 1.01223 0.97003 0.94856 1.70076 1.38143 1.38051 1.10593 0.85617 0.79659 0.77434 0.79472 1.20903 1.21210 1.17019 1.02147 0.74273 0.72991 0.73396 1.93584 1.63590 1.75755 1.61390 1.93542 1.87012 1.82475 1.34613 1.30989 1.27521 1.01232 1.15541 1.21325 0.95918 0.96473 0.91243 1.21921 0.93975 0.99051 0.99033 1.21986 1.01253 0.91358 0.92943 1.21638 0.91013 1.02363 0.98184 1.21565 0.97535 0.91974 1.00430 1.96791 1.74269 1.47904 1.77557 0.91946 0.94259 0.89656 0.89112 0.93678 0.89046 0.86351 0.96826 0.95161 0.92689 0.83157 0.80846 0.79654 0.81558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 11.01 113.37 1.25 1.85 16 2 O -0.40 -14.29 8.59 -129.64 -1.11 -15.40 16 3 C 0.03 1.05 6.28 71.98 0.45 1.50 16 4 C 0.12 3.83 4.94 86.38 0.43 4.25 16 5 N -0.98 -40.96 1.91 -519.84 -0.99 -41.95 16 6 C 0.26 13.00 5.43 85.63 0.46 13.47 16 7 C -0.55 -27.56 9.38 25.60 0.24 -27.32 16 8 H 0.08 3.75 5.80 -2.91 -0.02 3.73 16 9 C 0.01 0.55 5.46 84.65 0.46 1.01 16 10 N -0.93 -53.53 13.29 21.45 0.28 -53.25 16 11 Si 0.95 40.71 29.54 68.60 2.03 42.73 16 12 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 13 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 14 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 15 S 2.68 118.48 4.64 -56.49 -0.26 118.22 16 16 O -0.95 -42.66 15.12 -119.92 -1.81 -44.47 16 17 O -0.99 -50.93 14.94 -128.00 -1.91 -52.84 16 18 C -0.66 -25.17 5.83 22.29 0.13 -25.04 16 19 C -0.03 -0.95 8.82 22.27 0.20 -0.75 16 20 C -0.12 -2.77 10.05 22.27 0.22 -2.55 16 21 C -0.06 -1.12 10.05 22.27 0.22 -0.90 16 22 C -0.11 -2.80 9.79 22.29 0.22 -2.58 16 23 C -0.03 -1.18 6.21 22.31 0.14 -1.04 16 24 Br -0.05 -1.82 31.21 -20.37 -0.64 -2.45 16 25 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.04 1.47 8.07 -2.39 -0.02 1.45 16 30 H 0.09 2.63 7.72 -2.39 -0.02 2.61 16 31 H 0.12 3.34 8.11 -2.39 -0.02 3.32 16 32 H 0.01 0.80 6.86 -2.39 -0.02 0.78 16 33 H 0.03 1.56 8.04 -2.39 -0.02 1.54 16 34 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 35 H 0.15 4.51 5.41 -2.91 -0.02 4.49 16 36 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 37 H 0.19 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.17 3.08 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -74.85 348.86 1.08 -73.77 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 1.08 Total: 13.75 kcal Atomic # 6 Polarization: -42.53 SS G_CDS: 4.42 Total: -38.10 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -0.71 Total: -95.20 kcal Atomic # 8 Polarization: -107.88 SS G_CDS: -4.84 Total: -112.72 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 16 Polarization: 118.48 SS G_CDS: -0.26 Total: 118.22 kcal Atomic # 35 Polarization: -1.82 SS G_CDS: -0.64 Total: -2.45 kcal Total: -74.85 1.08 -73.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069739501.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.107 kcal (2) G-P(sol) polarization free energy of solvation -74.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds