Wall clock time and date at job start Tue Mar 31 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76201 * 103.00063 * 2 1 4 4 C 1.39100 * 119.99055 * 0.02562 * 3 2 1 5 5 C 1.38133 * 120.24381 * 180.02562 * 4 3 2 6 6 C 1.38202 * 120.21708 * 0.02562 * 5 4 3 7 7 Cl 1.73598 * 120.01254 * 179.97438 * 6 5 4 8 8 C 1.39712 * 119.97587 * 359.97360 * 6 5 4 9 9 C 1.47779 * 120.11661 * 180.02562 * 8 6 5 10 10 O 1.21560 * 120.00052 * 53.07970 * 9 8 6 11 11 N 1.34780 * 120.00203 * 233.08029 * 9 8 6 12 12 C 1.46504 * 119.99794 * 355.20275 * 11 9 8 13 13 C 1.50696 * 109.47151 * 264.78973 * 12 11 9 14 14 H 1.07991 * 120.00060 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99730 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99769 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00178 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47495 * 89.99351 * 17 15 13 19 19 H 1.48497 * 109.47287 * 209.99841 * 17 15 13 20 20 H 1.48508 * 109.46753 * 329.99366 * 17 15 13 21 21 C 1.46498 * 120.00429 * 175.20866 * 11 9 8 22 22 C 1.50697 * 109.47115 * 89.99425 * 21 11 9 23 23 C 1.38224 * 119.61454 * 94.98675 * 22 21 11 24 24 C 1.38633 * 119.16245 * 179.79161 * 23 22 21 25 25 C 1.38674 * 118.41549 * 0.46611 * 24 23 22 26 26 C 1.38183 * 119.16342 * 359.50760 * 25 24 23 27 27 N 1.31848 * 119.62086 * 274.99935 * 22 21 11 28 28 C 1.38641 * 119.99463 * 180.27531 * 3 2 1 29 29 H 1.08998 * 109.47557 * 300.00018 * 1 2 3 30 30 H 1.08995 * 109.47444 * 60.00113 * 1 2 3 31 31 H 1.09010 * 109.46846 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.87988 * 0.02562 * 4 3 2 33 33 H 1.07993 * 119.89817 * 179.97438 * 5 4 3 34 34 H 1.08995 * 109.46912 * 24.79499 * 12 11 9 35 35 H 1.09000 * 109.46759 * 144.79099 * 12 11 9 36 36 H 0.97003 * 119.99586 * 180.02562 * 16 15 13 37 37 H 1.09005 * 109.46594 * 329.99981 * 21 11 9 38 38 H 1.08997 * 109.47168 * 210.00193 * 21 11 9 39 39 H 1.07999 * 120.42495 * 359.97438 * 23 22 21 40 40 H 1.07995 * 120.79396 * 180.22771 * 24 23 22 41 41 H 1.08002 * 120.41777 * 179.78449 * 25 24 23 42 42 H 1.08006 * 119.61342 * 180.25231 * 26 25 24 43 43 H 1.08005 * 120.10764 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1929 2.6653 0.0005 5 6 1.4977 4.0126 0.0000 6 6 2.8159 4.4275 -0.0016 7 17 3.1929 6.1221 -0.0029 8 6 3.8451 3.4827 -0.0021 9 6 5.2558 3.9228 -0.0033 10 8 5.6483 4.7077 0.8379 11 7 6.1073 3.4540 -0.9369 12 6 5.6629 2.4295 -1.8852 13 6 6.0509 1.0671 -1.3712 14 1 6.5756 0.9737 -0.4319 15 6 5.7350 -0.0602 -2.0995 16 7 6.0731 -1.2492 -1.6507 17 14 4.8268 0.1014 -3.7239 18 1 5.8092 0.2376 -4.8290 19 1 3.9941 -1.1075 -3.9479 20 1 3.9547 1.3029 -3.6859 21 6 7.4773 3.9688 -1.0035 22 6 8.3723 3.1297 -0.1284 23 6 9.0866 2.0851 -0.6844 24 6 9.9105 1.3219 0.1285 25 6 9.9778 1.6334 1.4781 26 6 9.2347 2.6930 1.9625 27 7 8.4648 3.4003 1.1587 28 6 3.5362 2.1221 -0.0058 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 0.1608 2.3473 0.0014 33 1 0.7033 4.7442 0.0000 34 1 4.5798 2.4816 -1.9951 35 1 6.1349 2.6008 -2.8527 36 1 5.8512 -2.0422 -2.1633 37 1 7.4944 5.0019 -0.6562 38 1 7.8319 3.9258 -2.0333 39 1 9.0062 1.8678 -1.7392 40 1 10.4832 0.5020 -0.2788 41 1 10.6065 1.0580 2.1414 42 1 9.2849 2.9446 3.0117 43 1 4.3274 1.3869 -0.0099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069769540.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:09 Heat of formation + Delta-G solvation = 35.822627 kcal Electronic energy + Delta-G solvation = -30109.190970 eV Core-core repulsion = 26079.066427 eV Total energy + Delta-G solvation = -4030.124542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 376.075 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.07332 -39.37618 -37.87999 -36.19197 -35.21688 -32.81729 -31.99634 -31.70205 -30.78807 -30.59581 -28.87036 -28.21562 -26.28117 -23.46506 -22.96948 -22.63689 -22.36329 -21.52783 -19.29545 -17.35478 -17.08661 -16.46140 -16.42246 -16.08283 -15.76975 -15.38947 -15.31281 -15.01706 -14.37544 -14.26347 -13.92306 -13.80392 -13.52165 -13.39302 -13.10771 -12.90662 -12.75212 -12.67254 -12.47793 -12.36063 -12.10336 -11.76838 -11.59135 -11.49054 -11.37591 -11.25587 -10.97693 -10.68265 -10.64108 -10.28282 -9.98707 -9.69148 -9.34722 -9.26486 -9.19615 -8.88235 -8.78985 -8.66909 -8.42066 -7.80326 -7.14795 -6.25471 -4.26951 1.04164 1.39049 1.62691 1.65693 1.88738 2.35941 2.59324 3.15631 3.23645 3.25133 3.27671 3.65927 3.86350 4.24627 4.47527 4.81391 4.84686 4.96832 5.03137 5.04154 5.08079 5.19119 5.30097 5.32585 5.54102 5.56654 5.60331 5.61624 5.68791 5.87108 5.97832 6.04762 6.13777 6.21340 6.29823 6.38338 6.39234 6.46261 6.62167 6.66402 6.74331 6.95422 7.23302 7.25905 7.39789 8.02722 8.35290 8.60940 8.78314 8.86913 9.33685 10.85356 Molecular weight = 376.08amu Principal moments of inertia in cm(-1) A = 0.007559 B = 0.004877 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3703.235268 B = 5740.372092 C = 7784.007390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 S -0.080 6.080 3 C -0.095 4.095 4 C -0.114 4.114 5 C -0.109 4.109 6 C -0.006 4.006 7 Cl -0.059 7.059 8 C -0.092 4.092 9 C 0.562 3.438 10 O -0.519 6.519 11 N -0.581 5.581 12 C 0.200 3.800 13 C -0.542 4.542 14 H 0.083 0.917 15 C 0.089 3.911 16 N -0.878 5.878 17 Si 0.857 3.143 18 H -0.275 1.275 19 H -0.280 1.280 20 H -0.262 1.262 21 C 0.176 3.824 22 C 0.119 3.881 23 C -0.123 4.123 24 C -0.079 4.079 25 C -0.178 4.178 26 C 0.085 3.915 27 N -0.460 5.460 28 C -0.040 4.040 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.130 0.870 33 H 0.136 0.864 34 H 0.039 0.961 35 H 0.029 0.971 36 H 0.267 0.733 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.135 0.865 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.145 0.855 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.222 5.016 0.763 7.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.327 4.327 2 S 0.163 5.837 3 C -0.208 4.208 4 C -0.139 4.139 5 C -0.129 4.129 6 C -0.036 4.036 7 Cl -0.030 7.030 8 C -0.098 4.098 9 C 0.348 3.652 10 O -0.395 6.395 11 N -0.312 5.312 12 C 0.079 3.921 13 C -0.580 4.580 14 H 0.101 0.899 15 C -0.116 4.116 16 N -0.514 5.514 17 Si 0.684 3.316 18 H -0.201 1.201 19 H -0.206 1.206 20 H -0.187 1.187 21 C 0.052 3.948 22 C -0.021 4.021 23 C -0.144 4.144 24 C -0.105 4.105 25 C -0.198 4.198 26 C -0.072 4.072 27 N -0.169 5.169 28 C -0.063 4.063 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.125 0.875 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.153 0.847 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.163 0.837 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.837 4.995 1.484 7.110 hybrid contribution -0.898 0.013 -1.294 1.575 sum -5.735 5.008 0.189 7.616 Atomic orbital electron populations 1.23732 0.96797 1.06888 1.05236 1.86237 1.03736 1.01760 1.92008 1.21807 0.96485 0.97313 1.05211 1.21152 0.98396 0.92235 1.02070 1.20709 0.94208 0.95790 1.02200 1.20863 0.93608 0.85121 1.03993 1.98366 1.94879 1.13055 1.96674 1.19786 0.93640 0.92872 1.03499 1.17937 0.84667 0.81030 0.81582 1.90790 1.77593 1.34865 1.36266 1.47756 1.09844 1.40365 1.33203 1.20038 0.96233 0.87427 0.88401 1.21286 1.39415 0.88178 1.09150 0.89919 1.24760 0.94722 0.95092 0.97026 1.69873 1.45315 0.97815 1.38421 0.87111 0.80844 0.78765 0.84892 1.20088 1.20565 1.18685 1.20107 0.80350 0.96845 0.97522 1.21498 0.94666 0.94919 0.90967 1.21926 0.95764 0.94897 1.01780 1.21468 0.97371 0.98082 0.93625 1.22025 1.01986 0.99436 0.96348 1.22596 0.92927 0.92401 0.99325 1.67532 1.16143 1.28883 1.04321 1.21965 0.96301 0.95377 0.92692 0.89987 0.89980 0.87548 0.85213 0.84658 0.94347 0.95303 0.92309 0.89150 0.89317 0.84744 0.85465 0.85738 0.83726 0.80225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.15 101.05 0.92 -0.72 16 2 S -0.08 -1.31 22.56 -107.50 -2.43 -3.73 16 3 C -0.10 -1.65 6.10 -39.11 -0.24 -1.89 16 4 C -0.11 -1.62 9.36 -39.30 -0.37 -1.99 16 5 C -0.11 -1.57 9.81 -39.63 -0.39 -1.95 16 6 C -0.01 -0.10 6.34 -39.04 -0.25 -0.35 16 7 Cl -0.06 -0.97 27.31 -51.86 -1.42 -2.39 16 8 C -0.09 -1.83 4.77 -104.97 -0.50 -2.33 16 9 C 0.56 12.00 6.62 -12.36 -0.08 11.92 16 10 O -0.52 -11.97 15.71 5.31 0.08 -11.89 16 11 N -0.58 -11.91 2.45 -177.58 -0.43 -12.35 16 12 C 0.20 4.28 3.78 -5.19 -0.02 4.26 16 13 C -0.54 -13.13 6.69 -34.44 -0.23 -13.36 16 14 H 0.08 2.29 7.25 -52.49 -0.38 1.91 16 15 C 0.09 2.25 5.47 -17.82 -0.10 2.15 16 16 N -0.88 -23.78 13.96 55.43 0.77 -23.00 16 17 Si 0.86 19.18 27.47 -169.99 -4.67 14.51 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 21 C 0.18 3.22 5.72 -5.20 -0.03 3.19 16 22 C 0.12 2.28 5.83 -82.59 -0.48 1.80 16 23 C -0.12 -2.22 8.65 -39.44 -0.34 -2.56 16 24 C -0.08 -1.31 10.18 -39.27 -0.40 -1.71 16 25 C -0.18 -2.77 10.11 -39.44 -0.40 -3.17 16 26 C 0.08 1.46 11.18 -17.55 -0.20 1.26 16 27 N -0.46 -9.19 10.27 -9.47 -0.10 -9.29 16 28 C -0.04 -0.81 7.39 -38.95 -0.29 -1.10 16 29 H 0.08 0.74 7.74 -51.93 -0.40 0.34 16 30 H 0.08 0.77 7.74 -51.93 -0.40 0.37 16 31 H 0.11 0.94 8.14 -51.92 -0.42 0.52 16 32 H 0.13 1.42 5.85 -52.49 -0.31 1.11 16 33 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.04 0.85 4.70 -51.93 -0.24 0.60 16 35 H 0.03 0.59 7.39 -51.93 -0.38 0.21 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.09 1.66 7.49 -51.93 -0.39 1.27 16 38 H 0.09 1.37 7.84 -51.93 -0.41 0.97 16 39 H 0.13 2.34 8.06 -52.49 -0.42 1.91 16 40 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.15 2.08 8.06 -52.48 -0.42 1.66 16 43 H 0.18 4.16 5.22 -52.48 -0.27 3.88 16 LS Contribution 385.62 15.07 5.81 5.81 Total: -1.00 -30.25 385.62 -10.65 -40.91 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -4.89 Total: 7.96 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -3.38 Total: -6.55 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.24 Total: -44.64 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.08 Total: -11.89 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.67 Total: 14.51 kcal Atomic # 16 Polarization: -1.31 SS G_CDS: -2.43 Total: -3.73 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.42 Total: -2.39 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.25 -10.65 -40.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069769540.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.728 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds