Wall clock time and date at job start Tue Mar 31 2020 06:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76201 * 103.00063 * 2 1 4 4 C 1.39100 * 119.99055 * 0.02562 * 3 2 1 5 5 C 1.38133 * 120.24381 * 180.02562 * 4 3 2 6 6 C 1.38202 * 120.21708 * 0.02562 * 5 4 3 7 7 Cl 1.73598 * 120.01254 * 179.97438 * 6 5 4 8 8 C 1.39712 * 119.97587 * 359.97360 * 6 5 4 9 9 C 1.47779 * 120.11661 * 180.02562 * 8 6 5 10 10 O 1.21560 * 120.00052 * 53.07970 * 9 8 6 11 11 N 1.34780 * 120.00203 * 233.08029 * 9 8 6 12 12 C 1.46504 * 119.99794 * 355.20275 * 11 9 8 13 13 C 1.50696 * 109.47151 * 264.78973 * 12 11 9 14 14 H 1.07991 * 120.00060 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99730 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99769 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00178 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47495 * 89.99351 * 17 15 13 19 19 H 1.48497 * 109.47287 * 209.99841 * 17 15 13 20 20 H 1.48508 * 109.46753 * 329.99366 * 17 15 13 21 21 C 1.46498 * 120.00429 * 175.20866 * 11 9 8 22 22 C 1.50697 * 109.47115 * 89.99425 * 21 11 9 23 23 C 1.38224 * 119.61454 * 94.98675 * 22 21 11 24 24 C 1.38633 * 119.16245 * 179.79161 * 23 22 21 25 25 C 1.38674 * 118.41549 * 0.46611 * 24 23 22 26 26 C 1.38183 * 119.16342 * 359.50760 * 25 24 23 27 27 N 1.31848 * 119.62086 * 274.99935 * 22 21 11 28 28 C 1.38641 * 119.99463 * 180.27531 * 3 2 1 29 29 H 1.08998 * 109.47557 * 300.00018 * 1 2 3 30 30 H 1.08995 * 109.47444 * 60.00113 * 1 2 3 31 31 H 1.09010 * 109.46846 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.87988 * 0.02562 * 4 3 2 33 33 H 1.07993 * 119.89817 * 179.97438 * 5 4 3 34 34 H 1.08995 * 109.46912 * 24.79499 * 12 11 9 35 35 H 1.09000 * 109.46759 * 144.79099 * 12 11 9 36 36 H 0.97003 * 119.99586 * 180.02562 * 16 15 13 37 37 H 1.09005 * 109.46594 * 329.99981 * 21 11 9 38 38 H 1.08997 * 109.47168 * 210.00193 * 21 11 9 39 39 H 1.07999 * 120.42495 * 359.97438 * 23 22 21 40 40 H 1.07995 * 120.79396 * 180.22771 * 24 23 22 41 41 H 1.08002 * 120.41777 * 179.78449 * 25 24 23 42 42 H 1.08006 * 119.61342 * 180.25231 * 26 25 24 43 43 H 1.08005 * 120.10764 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1929 2.6653 0.0005 5 6 1.4977 4.0126 0.0000 6 6 2.8159 4.4275 -0.0016 7 17 3.1929 6.1221 -0.0029 8 6 3.8451 3.4827 -0.0021 9 6 5.2558 3.9228 -0.0033 10 8 5.6483 4.7077 0.8379 11 7 6.1073 3.4540 -0.9369 12 6 5.6629 2.4295 -1.8852 13 6 6.0509 1.0671 -1.3712 14 1 6.5756 0.9737 -0.4319 15 6 5.7350 -0.0602 -2.0995 16 7 6.0731 -1.2492 -1.6507 17 14 4.8268 0.1014 -3.7239 18 1 5.8092 0.2376 -4.8290 19 1 3.9941 -1.1075 -3.9479 20 1 3.9547 1.3029 -3.6859 21 6 7.4773 3.9688 -1.0035 22 6 8.3723 3.1297 -0.1284 23 6 9.0866 2.0851 -0.6844 24 6 9.9105 1.3219 0.1285 25 6 9.9778 1.6334 1.4781 26 6 9.2347 2.6930 1.9625 27 7 8.4648 3.4003 1.1587 28 6 3.5362 2.1221 -0.0058 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 0.1608 2.3473 0.0014 33 1 0.7033 4.7442 0.0000 34 1 4.5798 2.4816 -1.9951 35 1 6.1349 2.6008 -2.8527 36 1 5.8512 -2.0422 -2.1633 37 1 7.4944 5.0019 -0.6562 38 1 7.8319 3.9258 -2.0333 39 1 9.0062 1.8678 -1.7392 40 1 10.4832 0.5020 -0.2788 41 1 10.6065 1.0580 2.1414 42 1 9.2849 2.9446 3.0117 43 1 4.3274 1.3869 -0.0099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069769540.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:07 Heat of formation + Delta-G solvation = 19.554687 kcal Electronic energy + Delta-G solvation = -30109.896401 eV Core-core repulsion = 26079.066427 eV Total energy + Delta-G solvation = -4030.829973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 376.075 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.55987 -40.75388 -39.31453 -37.50507 -36.87804 -34.62245 -33.47362 -33.08844 -32.11554 -31.90419 -29.99292 -29.77035 -27.74560 -24.95465 -24.39013 -24.02652 -23.95051 -22.91088 -20.76143 -19.11564 -18.68314 -17.91967 -17.70831 -17.48495 -17.19898 -16.91994 -16.72215 -16.38773 -16.03207 -15.48085 -15.26774 -15.03403 -14.93558 -14.70163 -14.61321 -14.26023 -14.13477 -14.02190 -13.88518 -13.69310 -13.53365 -13.29823 -12.99247 -12.78353 -12.75218 -12.69000 -12.61108 -12.31723 -12.04310 -11.95956 -11.63538 -11.10973 -10.89530 -10.70831 -10.64769 -10.52708 -10.30364 -10.06622 -9.83400 -9.44892 -8.41617 -8.21574 -6.24560 -0.28124 0.07087 0.26606 0.49775 0.51630 1.07318 1.36844 1.42998 1.48143 1.53682 1.71152 2.16772 2.37486 2.46125 3.06513 3.12124 3.43616 3.51489 3.76582 3.90857 4.00882 4.07408 4.22674 4.26100 4.31184 4.31501 4.33349 4.34793 4.50476 4.57842 4.69010 4.76547 4.82096 4.84103 4.85853 4.92622 4.95753 5.04951 5.13778 5.30914 5.38687 5.48211 5.56236 5.65164 5.90757 6.22420 6.54994 6.78057 7.20351 7.22185 7.38932 8.92632 Molecular weight = 376.08amu Principal moments of inertia in cm(-1) A = 0.007559 B = 0.004877 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3703.235268 B = 5740.372092 C = 7784.007390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.157 6.157 3 C -0.094 4.094 4 C -0.096 4.096 5 C -0.092 4.092 6 C -0.017 4.017 7 Cl -0.055 7.055 8 C -0.116 4.116 9 C 0.557 3.443 10 O -0.545 6.545 11 N -0.582 5.582 12 C 0.210 3.790 13 C -0.517 4.517 14 H 0.038 0.962 15 C 0.048 3.952 16 N -0.923 5.923 17 Si 0.909 3.091 18 H -0.265 1.265 19 H -0.285 1.285 20 H -0.250 1.250 21 C 0.171 3.829 22 C 0.101 3.899 23 C -0.137 4.137 24 C -0.088 4.088 25 C -0.169 4.169 26 C 0.070 3.930 27 N -0.495 5.495 28 C -0.064 4.064 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.124 0.876 32 H 0.175 0.825 33 H 0.177 0.823 34 H 0.038 0.962 35 H 0.045 0.955 36 H 0.265 0.735 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.135 0.865 40 H 0.150 0.850 41 H 0.162 0.838 42 H 0.168 0.832 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.827 5.620 0.050 9.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.086 5.914 3 C -0.207 4.207 4 C -0.120 4.120 5 C -0.112 4.112 6 C -0.047 4.047 7 Cl -0.026 7.026 8 C -0.122 4.122 9 C 0.344 3.656 10 O -0.424 6.424 11 N -0.312 5.312 12 C 0.088 3.912 13 C -0.555 4.555 14 H 0.056 0.944 15 C -0.154 4.154 16 N -0.562 5.562 17 Si 0.734 3.266 18 H -0.190 1.190 19 H -0.211 1.211 20 H -0.174 1.174 21 C 0.048 3.952 22 C -0.038 4.038 23 C -0.157 4.157 24 C -0.114 4.114 25 C -0.189 4.189 26 C -0.087 4.087 27 N -0.205 5.205 28 C -0.088 4.088 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.143 0.857 32 H 0.192 0.808 33 H 0.195 0.805 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.132 0.868 39 H 0.153 0.847 40 H 0.168 0.832 41 H 0.179 0.821 42 H 0.185 0.815 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.431 5.618 0.756 9.346 hybrid contribution -0.126 -0.201 -0.928 0.958 sum -7.557 5.417 -0.172 9.300 Atomic orbital electron populations 1.23857 0.90727 1.08774 1.07159 1.86516 1.10503 1.02363 1.92057 1.21861 0.96013 0.97999 1.04853 1.21633 0.99610 0.91419 0.99380 1.21195 0.93749 0.96736 0.99476 1.21066 0.94285 0.84961 1.04380 1.98363 1.95055 1.12548 1.96669 1.19730 0.93298 0.93444 1.05733 1.18312 0.85595 0.80563 0.81105 1.90751 1.78337 1.36233 1.37078 1.47798 1.10657 1.39884 1.32853 1.19856 0.96228 0.86134 0.88948 1.21121 1.37663 0.89684 1.07023 0.94352 1.25324 0.95487 0.94584 0.99956 1.70000 1.47560 0.98582 1.40030 0.86271 0.80067 0.78806 0.81468 1.19005 1.21095 1.17397 1.20302 0.79516 0.96421 0.98995 1.21575 0.95425 0.95719 0.91080 1.22029 0.96400 0.95159 1.02128 1.21848 0.97094 0.98290 0.94147 1.22398 1.01336 0.98705 0.96467 1.23103 0.92657 0.92716 1.00232 1.67504 1.17532 1.30448 1.05008 1.21535 0.96895 0.94676 0.95685 0.87793 0.88104 0.85744 0.80806 0.80525 0.94410 0.93725 0.92544 0.89628 0.86768 0.84721 0.83239 0.82055 0.81462 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.15 113.37 1.04 -1.28 16 2 S -0.16 -5.00 22.56 -56.49 -1.27 -6.28 16 3 C -0.09 -3.17 6.10 22.57 0.14 -3.03 16 4 C -0.10 -2.38 9.36 22.45 0.21 -2.17 16 5 C -0.09 -2.30 9.81 22.24 0.22 -2.08 16 6 C -0.02 -0.55 6.34 22.62 0.14 -0.41 16 7 Cl -0.06 -1.77 27.31 -2.72 -0.07 -1.84 16 8 C -0.12 -4.69 4.77 -20.09 -0.10 -4.78 16 9 C 0.56 24.61 6.62 86.77 0.57 25.18 16 10 O -0.55 -26.13 15.71 -3.91 -0.06 -26.19 16 11 N -0.58 -24.64 2.45 -834.00 -2.04 -26.68 16 12 C 0.21 9.14 3.78 85.63 0.32 9.46 16 13 C -0.52 -26.02 6.69 25.60 0.17 -25.85 16 14 H 0.04 2.26 7.25 -2.91 -0.02 2.24 16 15 C 0.05 2.45 5.47 84.66 0.46 2.92 16 16 N -0.92 -51.95 13.96 21.45 0.30 -51.65 16 17 Si 0.91 39.59 27.47 68.60 1.88 41.47 16 18 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 20 H -0.25 -10.30 6.54 99.48 0.65 -9.65 16 21 C 0.17 6.49 5.72 85.63 0.49 6.98 16 22 C 0.10 4.02 5.83 42.55 0.25 4.27 16 23 C -0.14 -5.09 8.65 22.36 0.19 -4.90 16 24 C -0.09 -2.90 10.18 22.47 0.23 -2.67 16 25 C -0.17 -5.17 10.11 22.36 0.23 -4.95 16 26 C 0.07 2.43 11.18 84.67 0.95 3.38 16 27 N -0.50 -20.57 10.27 -183.89 -1.89 -22.46 16 28 C -0.06 -2.65 7.39 22.68 0.17 -2.48 16 29 H 0.10 1.35 7.74 -2.39 -0.02 1.33 16 30 H 0.10 1.38 7.74 -2.39 -0.02 1.37 16 31 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.17 2.74 5.85 -2.91 -0.02 2.73 16 33 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 34 H 0.04 1.68 4.70 -2.39 -0.01 1.67 16 35 H 0.04 1.80 7.39 -2.39 -0.02 1.79 16 36 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 37 H 0.09 3.28 7.49 -2.38 -0.02 3.27 16 38 H 0.11 3.59 7.84 -2.39 -0.02 3.57 16 39 H 0.13 4.85 8.06 -2.91 -0.02 4.82 16 40 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 41 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 42 H 0.17 4.79 8.06 -2.91 -0.02 4.76 16 43 H 0.14 6.90 5.22 -2.91 -0.02 6.89 16 Total: -1.00 -71.13 385.62 3.53 -67.60 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 1.00 Total: 28.44 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 5.68 Total: -2.42 kcal Atomic # 7 Polarization: -97.15 SS G_CDS: -3.63 Total: -100.79 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.06 Total: -26.19 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 1.88 Total: 41.47 kcal Atomic # 16 Polarization: -5.00 SS G_CDS: -1.27 Total: -6.28 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.07 Total: -1.84 kcal Total: -71.13 3.53 -67.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069769540.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.155 kcal (2) G-P(sol) polarization free energy of solvation -71.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds