Wall clock time and date at job start Tue Mar 31 2020 07:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00387 * 2 1 4 4 C 1.52995 * 109.47617 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46824 * 64.99777 * 4 3 2 6 6 C 1.46499 * 119.99936 * 85.00335 * 5 4 3 7 7 C 1.50704 * 109.46882 * 84.99554 * 6 5 4 8 8 H 1.07992 * 120.00253 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99387 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99444 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00197 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47168 * 90.00339 * 11 9 7 13 13 H 1.48506 * 109.47110 * 209.99999 * 11 9 7 14 14 H 1.48495 * 109.47486 * 330.00111 * 11 9 7 15 15 S 1.65597 * 120.00079 * 264.72374 * 5 4 3 16 16 O 1.42095 * 106.40469 * 203.54076 * 15 5 4 17 17 O 1.42098 * 106.40441 * 336.46418 * 15 5 4 18 18 C 1.76207 * 107.21624 * 90.00391 * 15 5 4 19 19 C 1.38241 * 119.98743 * 269.72470 * 18 15 5 20 20 C 1.38221 * 120.00615 * 179.76902 * 19 18 15 21 21 C 1.38319 * 119.99250 * 0.50824 * 20 19 18 22 22 Br 1.89093 * 120.01228 * 179.72765 * 21 20 19 23 23 C 1.38332 * 119.97783 * 359.74362 * 21 20 19 24 24 C 1.38212 * 119.98916 * 0.02562 * 23 21 20 25 25 H 1.08998 * 109.46778 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46604 * 300.00035 * 1 2 3 27 27 H 1.08996 * 109.46789 * 59.99787 * 1 2 3 28 28 H 1.09005 * 109.46916 * 59.99866 * 3 2 1 29 29 H 1.08999 * 109.46972 * 300.00402 * 3 2 1 30 30 H 1.08999 * 109.46886 * 305.00420 * 4 3 2 31 31 H 1.08999 * 109.47559 * 184.99651 * 4 3 2 32 32 H 1.08991 * 109.47463 * 204.99792 * 6 5 4 33 33 H 1.09000 * 109.46878 * 325.00020 * 6 5 4 34 34 H 0.96996 * 119.99753 * 179.97438 * 10 9 7 35 35 H 1.08005 * 119.99660 * 0.02562 * 19 18 15 36 36 H 1.08001 * 119.99990 * 180.22970 * 20 19 18 37 37 H 1.07995 * 120.00396 * 179.97438 * 23 21 20 38 38 H 1.07999 * 119.99893 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1808 1.3890 -2.4462 7 6 5.5682 1.9769 -2.4180 8 1 6.2308 1.7579 -1.5939 9 6 5.9913 2.7945 -3.4445 10 7 7.2022 3.3072 -3.4202 11 14 4.8447 3.1738 -4.8696 12 1 4.0541 4.3916 -4.5582 13 1 5.6438 3.4037 -6.1001 14 1 3.9250 2.0278 -5.0836 15 16 4.2479 -1.0678 -1.3173 16 8 5.1480 -1.2821 -2.3957 17 8 4.5181 -1.4825 0.0147 18 6 2.7286 -1.8322 -1.7780 19 6 1.8336 -2.2331 -0.8037 20 6 0.6395 -2.8284 -1.1647 21 6 0.3449 -3.0325 -2.5007 22 35 -1.2851 -3.8539 -2.9949 23 6 1.2431 -2.6359 -3.4750 24 6 2.4348 -2.0364 -3.1132 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6887 1.8464 0.8900 29 1 1.6887 1.8464 -0.8899 30 1 3.8515 0.5682 0.8409 31 1 3.9786 2.1765 0.0889 32 1 4.0654 0.7728 -3.3378 33 1 3.4456 2.1934 -2.4627 34 1 7.5000 3.8820 -4.1425 35 1 2.0655 -2.0773 0.2396 36 1 -0.0613 -3.1382 -0.4036 37 1 1.0137 -2.7955 -4.5182 38 1 3.1364 -1.7270 -3.8738 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069842010.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:53 Heat of formation + Delta-G solvation = -73.836233 kcal Electronic energy + Delta-G solvation = -25600.500390 eV Core-core repulsion = 21810.332320 eV Total energy + Delta-G solvation = -3790.168069 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 377.013 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.28562 -38.05109 -36.67940 -35.68724 -35.23521 -32.65233 -32.53404 -31.25903 -29.86707 -29.52384 -27.27135 -26.10136 -23.20155 -22.87140 -22.62047 -21.47242 -18.78352 -17.73234 -17.09032 -16.82062 -16.54606 -15.84917 -15.68942 -15.64496 -15.23595 -14.80798 -14.60486 -14.19886 -13.76968 -13.56662 -13.34252 -12.78417 -12.59103 -12.40169 -12.21880 -12.06987 -11.75844 -11.64692 -11.50742 -11.35569 -11.23435 -11.22614 -11.14218 -10.64103 -10.59623 -10.55505 -10.37568 -10.24089 -9.69685 -9.58378 -9.12373 -9.02544 -8.63684 -8.20131 -6.12125 -4.11872 0.53833 0.99000 1.20361 1.31486 3.19833 3.21923 3.30222 3.31498 3.60897 3.88963 4.34208 4.35725 4.51068 4.73697 4.87646 5.15377 5.16153 5.24308 5.25213 5.33838 5.39073 5.43268 5.44960 5.47268 5.59623 5.71009 5.82759 5.83568 5.98084 6.12134 6.22249 6.30536 6.63985 6.65934 6.98045 7.11553 7.31913 7.52465 8.44221 8.93039 9.46637 11.01294 Molecular weight = 377.01amu Principal moments of inertia in cm(-1) A = 0.013159 B = 0.003557 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.284080 B = 7870.960776 C = 8453.490541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.390 6.390 3 C 0.035 3.965 4 C 0.123 3.877 5 N -0.971 5.971 6 C 0.226 3.774 7 C -0.533 4.533 8 H 0.080 0.920 9 C 0.075 3.925 10 N -0.893 5.893 11 Si 0.870 3.130 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.264 1.264 15 S 2.691 3.309 16 O -0.942 6.942 17 O -0.968 6.968 18 C -0.654 4.654 19 C 0.031 3.969 20 C -0.131 4.131 21 C -0.042 4.042 22 Br -0.054 7.054 23 C -0.124 4.124 24 C -0.012 4.012 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.035 0.965 33 H 0.029 0.971 34 H 0.265 0.735 35 H 0.152 0.848 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.042 -10.901 4.250 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.309 6.309 3 C -0.043 4.043 4 C -0.003 4.003 5 N -0.809 5.809 6 C 0.103 3.897 7 C -0.572 4.572 8 H 0.098 0.902 9 C -0.128 4.128 10 N -0.531 5.531 11 Si 0.697 3.303 12 H -0.201 1.201 13 H -0.208 1.208 14 H -0.189 1.189 15 S 2.779 3.221 16 O -0.932 6.932 17 O -0.958 6.958 18 C -0.738 4.738 19 C 0.012 3.988 20 C -0.151 4.151 21 C -0.122 4.122 22 Br 0.031 6.969 23 C -0.145 4.145 24 C -0.032 4.032 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.169 0.831 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -19.659 -11.676 4.102 23.230 hybrid contribution -1.267 0.817 -1.044 1.834 sum -20.926 -10.859 3.058 23.773 Atomic orbital electron populations 1.22738 0.81700 1.02530 0.99864 1.87921 1.19454 1.28200 1.95369 1.23256 0.95532 0.84783 1.00752 1.21358 0.90628 1.01885 0.86465 1.57136 1.82335 1.23526 1.17891 1.19486 0.97902 0.90784 0.81532 1.21361 0.97698 1.29142 1.08984 0.90189 1.24847 0.94980 0.95352 0.97597 1.69888 1.17348 1.32735 1.33121 0.86955 0.81356 0.79165 0.82867 1.20086 1.20810 1.18876 1.02114 0.73654 0.72774 0.73590 1.93612 1.59305 1.84623 1.55649 1.93503 1.83601 1.81670 1.37016 1.31531 1.25323 1.16089 1.00896 1.20889 0.90309 0.88016 0.99635 1.21143 0.98366 1.01574 0.94038 1.22027 0.93013 1.00933 0.96247 1.96724 1.27573 1.79712 1.92850 1.21143 0.93891 1.00334 0.99125 1.21017 0.95351 0.92001 0.94815 0.89922 0.94161 0.94262 0.92365 0.92500 0.88945 0.87425 0.94747 0.95273 0.92464 0.83056 0.84707 0.84572 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.29 101.05 1.04 1.31 16 2 O -0.39 -4.84 5.95 -35.23 -0.21 -5.05 16 3 C 0.03 0.43 6.28 37.16 0.23 0.67 16 4 C 0.12 1.90 6.07 -4.04 -0.02 1.88 16 5 N -0.97 -18.53 2.71 -115.66 -0.31 -18.84 16 6 C 0.23 5.00 4.16 -5.19 -0.02 4.98 16 7 C -0.53 -14.46 9.94 -34.44 -0.34 -14.80 16 8 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 9 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 10 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 11 Si 0.87 20.35 27.47 -169.99 -4.67 15.68 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 15 S 2.69 51.73 5.53 -107.50 -0.59 51.13 16 16 O -0.94 -21.49 16.25 -57.17 -0.93 -22.42 16 17 O -0.97 -19.28 15.83 -57.17 -0.90 -20.19 16 18 C -0.65 -10.19 5.45 -39.58 -0.22 -10.40 16 19 C 0.03 0.42 5.99 -39.59 -0.24 0.18 16 20 C -0.13 -1.47 7.82 -39.56 -0.31 -1.78 16 21 C -0.04 -0.49 6.22 -39.52 -0.25 -0.74 16 22 Br -0.05 -0.53 33.70 -68.01 -2.29 -2.82 16 23 C -0.12 -1.54 9.79 -39.56 -0.39 -1.93 16 24 C -0.01 -0.17 9.52 -39.59 -0.38 -0.55 16 25 H 0.08 0.71 5.79 -51.93 -0.30 0.41 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 30 H 0.09 1.38 6.91 -51.93 -0.36 1.03 16 31 H 0.11 1.64 8.11 -51.93 -0.42 1.22 16 32 H 0.03 0.77 6.67 -51.93 -0.35 0.43 16 33 H 0.03 0.60 7.47 -51.93 -0.39 0.21 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.15 1.94 6.75 -52.48 -0.35 1.59 16 36 H 0.14 1.18 7.83 -52.49 -0.41 0.77 16 37 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.15 2.13 7.62 -52.49 -0.40 1.73 16 LS Contribution 343.22 15.07 5.17 5.17 Total: -1.00 -32.55 343.22 -9.63 -42.18 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -4.68 Total: 0.24 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -0.98 Total: -19.18 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.46 Total: -44.74 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -2.04 Total: -47.66 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.68 kcal Atomic # 16 Polarization: 51.73 SS G_CDS: -0.59 Total: 51.13 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.29 Total: -2.82 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.55 -9.63 -42.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069842010.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.659 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds