Wall clock time and date at job start Tue Mar 31 2020 07:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00387 * 2 1 4 4 C 1.52995 * 109.47617 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46824 * 64.99777 * 4 3 2 6 6 C 1.46499 * 119.99936 * 85.00335 * 5 4 3 7 7 C 1.50704 * 109.46882 * 84.99554 * 6 5 4 8 8 H 1.07992 * 120.00253 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99387 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99444 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00197 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47168 * 90.00339 * 11 9 7 13 13 H 1.48506 * 109.47110 * 209.99999 * 11 9 7 14 14 H 1.48495 * 109.47486 * 330.00111 * 11 9 7 15 15 S 1.65597 * 120.00079 * 264.72374 * 5 4 3 16 16 O 1.42095 * 106.40469 * 203.54076 * 15 5 4 17 17 O 1.42098 * 106.40441 * 336.46418 * 15 5 4 18 18 C 1.76207 * 107.21624 * 90.00391 * 15 5 4 19 19 C 1.38241 * 119.98743 * 269.72470 * 18 15 5 20 20 C 1.38221 * 120.00615 * 179.76902 * 19 18 15 21 21 C 1.38319 * 119.99250 * 0.50824 * 20 19 18 22 22 Br 1.89093 * 120.01228 * 179.72765 * 21 20 19 23 23 C 1.38332 * 119.97783 * 359.74362 * 21 20 19 24 24 C 1.38212 * 119.98916 * 0.02562 * 23 21 20 25 25 H 1.08998 * 109.46778 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46604 * 300.00035 * 1 2 3 27 27 H 1.08996 * 109.46789 * 59.99787 * 1 2 3 28 28 H 1.09005 * 109.46916 * 59.99866 * 3 2 1 29 29 H 1.08999 * 109.46972 * 300.00402 * 3 2 1 30 30 H 1.08999 * 109.46886 * 305.00420 * 4 3 2 31 31 H 1.08999 * 109.47559 * 184.99651 * 4 3 2 32 32 H 1.08991 * 109.47463 * 204.99792 * 6 5 4 33 33 H 1.09000 * 109.46878 * 325.00020 * 6 5 4 34 34 H 0.96996 * 119.99753 * 179.97438 * 10 9 7 35 35 H 1.08005 * 119.99660 * 0.02562 * 19 18 15 36 36 H 1.08001 * 119.99990 * 180.22970 * 20 19 18 37 37 H 1.07995 * 120.00396 * 179.97438 * 23 21 20 38 38 H 1.07999 * 119.99893 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1808 1.3890 -2.4462 7 6 5.5682 1.9769 -2.4180 8 1 6.2308 1.7579 -1.5939 9 6 5.9913 2.7945 -3.4445 10 7 7.2022 3.3072 -3.4202 11 14 4.8447 3.1738 -4.8696 12 1 4.0541 4.3916 -4.5582 13 1 5.6438 3.4037 -6.1001 14 1 3.9250 2.0278 -5.0836 15 16 4.2479 -1.0678 -1.3173 16 8 5.1480 -1.2821 -2.3957 17 8 4.5181 -1.4825 0.0147 18 6 2.7286 -1.8322 -1.7780 19 6 1.8336 -2.2331 -0.8037 20 6 0.6395 -2.8284 -1.1647 21 6 0.3449 -3.0325 -2.5007 22 35 -1.2851 -3.8539 -2.9949 23 6 1.2431 -2.6359 -3.4750 24 6 2.4348 -2.0364 -3.1132 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6887 1.8464 0.8900 29 1 1.6887 1.8464 -0.8899 30 1 3.8515 0.5682 0.8409 31 1 3.9786 2.1765 0.0889 32 1 4.0654 0.7728 -3.3378 33 1 3.4456 2.1934 -2.4627 34 1 7.5000 3.8820 -4.1425 35 1 2.0655 -2.0773 0.2396 36 1 -0.0613 -3.1382 -0.4036 37 1 1.0137 -2.7955 -4.5182 38 1 3.1364 -1.7270 -3.8738 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069842010.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:52 Heat of formation + Delta-G solvation = -96.517546 kcal Electronic energy + Delta-G solvation = -25601.483925 eV Core-core repulsion = 21810.332320 eV Total energy + Delta-G solvation = -3791.151605 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 377.013 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.29286 -39.06544 -38.26900 -37.11416 -36.83786 -34.55337 -33.61878 -32.26295 -31.28980 -30.47966 -28.85286 -26.99751 -24.56180 -23.97298 -23.90710 -22.86212 -20.10256 -19.27505 -18.80987 -18.42211 -17.67452 -17.00187 -16.79080 -16.64944 -16.47970 -15.99683 -15.86978 -15.65760 -15.24799 -14.56976 -14.47157 -14.39092 -14.11228 -13.65821 -13.56397 -13.30478 -13.13704 -13.12463 -12.98904 -12.73703 -12.61845 -12.36867 -12.31544 -12.09016 -11.96324 -11.90075 -11.70531 -11.61134 -11.37597 -10.75053 -10.54510 -10.09464 -10.01515 -9.75303 -8.26259 -6.31717 -0.64272 -0.34751 0.21550 0.41436 1.37318 1.41847 1.50741 1.97925 2.36867 2.38743 2.79758 3.07271 3.10116 3.31117 3.70127 3.83652 4.02858 4.22257 4.22611 4.26354 4.35604 4.47615 4.60636 4.63990 4.68415 4.82359 4.83534 4.86822 4.90060 4.93490 4.99881 5.06054 5.10010 5.34700 5.50097 5.63879 5.76144 6.28412 6.34449 6.71899 7.31182 8.91183 Molecular weight = 377.01amu Principal moments of inertia in cm(-1) A = 0.013159 B = 0.003557 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.284080 B = 7870.960776 C = 8453.490541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.406 6.406 3 C 0.044 3.956 4 C 0.113 3.887 5 N -0.978 5.978 6 C 0.235 3.765 7 C -0.540 4.540 8 H 0.032 0.968 9 C 0.011 3.989 10 N -0.947 5.947 11 Si 0.938 3.062 12 H -0.254 1.254 13 H -0.286 1.286 14 H -0.240 1.240 15 S 2.690 3.310 16 O -0.992 6.992 17 O -0.986 6.986 18 C -0.656 4.656 19 C 0.031 3.969 20 C -0.118 4.118 21 C -0.041 4.041 22 Br -0.028 7.028 23 C -0.121 4.121 24 C -0.028 4.028 25 H 0.094 0.906 26 H 0.057 0.943 27 H 0.038 0.962 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.035 0.965 33 H 0.056 0.944 34 H 0.267 0.733 35 H 0.155 0.845 36 H 0.167 0.833 37 H 0.157 0.843 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.610 -11.706 3.867 27.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.326 6.326 3 C -0.033 4.033 4 C -0.012 4.012 5 N -0.816 5.816 6 C 0.111 3.889 7 C -0.580 4.580 8 H 0.050 0.950 9 C -0.187 4.187 10 N -0.588 5.588 11 Si 0.760 3.240 12 H -0.178 1.178 13 H -0.212 1.212 14 H -0.163 1.163 15 S 2.784 3.216 16 O -0.983 6.983 17 O -0.976 6.976 18 C -0.746 4.746 19 C 0.011 3.989 20 C -0.138 4.138 21 C -0.121 4.121 22 Br 0.058 6.942 23 C -0.141 4.141 24 C -0.049 4.049 25 H 0.113 0.887 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.173 0.827 36 H 0.185 0.815 37 H 0.175 0.825 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -24.206 -12.466 3.770 27.487 hybrid contribution 0.082 0.930 -0.823 1.245 sum -24.124 -11.536 2.947 26.902 Atomic orbital electron populations 1.22916 0.80038 1.03625 1.00719 1.87889 1.21198 1.27930 1.95545 1.23085 0.92831 0.85294 1.02138 1.21576 0.93421 1.01253 0.84937 1.57009 1.82984 1.23365 1.18208 1.19233 0.95297 0.91521 0.82874 1.21684 0.99619 1.29114 1.07539 0.94990 1.25862 0.96754 0.95143 1.00964 1.70066 1.19948 1.34218 1.34535 0.85857 0.79419 0.80463 0.78222 1.17783 1.21154 1.16315 1.01584 0.74571 0.72860 0.72581 1.93543 1.62449 1.85324 1.56938 1.93464 1.84712 1.81864 1.37609 1.30753 1.23792 1.18000 1.02075 1.20980 0.90645 0.88009 0.99273 1.21428 0.97699 0.99929 0.94785 1.22249 0.93707 0.99914 0.96252 1.96770 1.25620 1.79102 1.92739 1.21335 0.92915 0.99354 1.00521 1.21040 0.96435 0.93233 0.94162 0.88723 0.92410 0.94310 0.89393 0.92526 0.89007 0.88004 0.94712 0.92627 0.92394 0.82713 0.81523 0.82508 0.84395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.29 113.37 1.17 1.52 16 2 O -0.41 -9.05 5.95 -148.98 -0.89 -9.94 16 3 C 0.04 1.02 6.28 71.98 0.45 1.47 16 4 C 0.11 3.52 6.07 86.38 0.52 4.04 16 5 N -0.98 -38.02 2.71 -519.85 -1.41 -39.43 16 6 C 0.24 10.46 4.16 85.63 0.36 10.81 16 7 C -0.54 -30.57 9.94 25.60 0.25 -30.32 16 8 H 0.03 2.05 8.06 -2.91 -0.02 2.02 16 9 C 0.01 0.61 5.47 84.66 0.46 1.08 16 10 N -0.95 -59.06 13.96 21.45 0.30 -58.76 16 11 Si 0.94 41.74 27.47 68.60 1.88 43.62 16 12 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 13 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 14 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 15 S 2.69 106.65 5.53 -56.49 -0.31 106.34 16 16 O -0.99 -47.72 16.25 -128.00 -2.08 -49.80 16 17 O -0.99 -40.61 15.83 -128.00 -2.03 -42.63 16 18 C -0.66 -19.92 5.45 22.27 0.12 -19.79 16 19 C 0.03 0.76 5.99 22.27 0.13 0.89 16 20 C -0.12 -2.22 7.82 22.28 0.17 -2.04 16 21 C -0.04 -0.80 6.22 22.31 0.14 -0.66 16 22 Br -0.03 -0.44 33.70 -20.37 -0.69 -1.13 16 23 C -0.12 -2.66 9.79 22.29 0.22 -2.44 16 24 C -0.03 -0.79 9.52 22.26 0.21 -0.58 16 25 H 0.09 1.22 5.79 -2.39 -0.01 1.21 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.06 1.31 8.08 -2.39 -0.02 1.29 16 30 H 0.09 2.81 6.91 -2.39 -0.02 2.80 16 31 H 0.10 3.20 8.11 -2.39 -0.02 3.18 16 32 H 0.03 1.55 6.67 -2.39 -0.02 1.54 16 33 H 0.06 2.19 7.47 -2.39 -0.02 2.17 16 34 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 35 H 0.16 3.67 6.75 -2.91 -0.02 3.65 16 36 H 0.17 2.07 7.83 -2.91 -0.02 2.05 16 37 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 38 H 0.14 4.03 7.62 -2.91 -0.02 4.01 16 Total: -1.00 -74.41 343.22 0.02 -74.39 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 1.02 Total: 13.37 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 4.21 Total: -36.03 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -1.11 Total: -98.20 kcal Atomic # 8 Polarization: -97.38 SS G_CDS: -4.99 Total: -102.37 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 1.88 Total: 43.62 kcal Atomic # 16 Polarization: 106.65 SS G_CDS: -0.31 Total: 106.34 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -0.69 Total: -1.13 kcal Total: -74.41 0.02 -74.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069842010.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.127 kcal (2) G-P(sol) polarization free energy of solvation -74.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds