Wall clock time and date at job start Tue Mar 31 2020 06:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00096 * 2 1 4 4 C 1.38209 * 119.99915 * 179.97438 * 3 2 1 5 5 N 1.48017 * 120.00065 * 179.97438 * 4 3 2 6 6 O 1.21804 * 119.99868 * 359.97438 * 5 4 3 7 7 O 1.21801 * 120.00358 * 180.02562 * 5 4 3 8 8 C 1.38264 * 119.99921 * 359.70141 * 4 3 2 9 9 C 1.38211 * 120.00039 * 0.55288 * 8 4 3 10 10 C 1.38218 * 120.00022 * 179.97438 * 2 1 3 11 11 S 1.76204 * 119.99578 * 0.02562 * 10 2 1 12 12 O 1.42096 * 106.40157 * 280.15510 * 11 10 2 13 13 O 1.42101 * 106.40287 * 53.08013 * 11 10 2 14 14 N 1.65607 * 107.21469 * 166.61964 * 11 10 2 15 15 C 1.46502 * 119.99592 * 265.45856 * 14 11 10 16 16 C 1.50705 * 109.47209 * 96.16768 * 15 14 11 17 17 H 1.08001 * 119.99738 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00049 * 179.97438 * 16 15 14 19 19 N 1.31508 * 119.99851 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99678 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47109 * 59.99871 * 20 18 16 22 22 H 1.48506 * 109.46672 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46973 * 299.99654 * 20 18 16 24 24 C 1.39673 * 120.00240 * 85.46055 * 14 11 10 25 25 C 1.38915 * 120.06921 * 333.77363 * 24 14 11 26 26 C 1.38107 * 119.91543 * 179.76679 * 25 24 14 27 27 C 1.38280 * 120.07794 * 0.51548 * 26 25 24 28 28 C 1.38281 * 120.15197 * 359.73922 * 27 26 25 29 29 C 1.38103 * 120.07302 * 0.02562 * 28 27 26 30 30 H 1.08997 * 109.47387 * 271.54055 * 1 2 3 31 31 H 1.08998 * 109.46797 * 31.53949 * 1 2 3 32 32 H 1.09005 * 109.46779 * 151.53772 * 1 2 3 33 33 H 1.07995 * 120.00104 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.99673 * 180.29536 * 8 4 3 35 35 H 1.07993 * 119.99724 * 179.74327 * 9 8 4 36 36 H 1.08996 * 109.46960 * 216.16142 * 15 14 11 37 37 H 1.08995 * 109.47786 * 336.16324 * 15 14 11 38 38 H 0.97003 * 119.99663 * 179.97438 * 19 18 16 39 39 H 1.07991 * 120.04218 * 0.02562 * 25 24 14 40 40 H 1.08007 * 119.95796 * 180.25314 * 26 25 24 41 41 H 1.08006 * 119.92519 * 179.72033 * 27 26 25 42 42 H 1.07996 * 119.96494 * 179.97438 * 28 27 26 43 43 H 1.07998 * 120.03970 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 7 4.3205 2.4791 0.0000 6 8 3.7116 3.5340 -0.0015 7 8 5.5386 2.4791 0.0000 8 6 4.2717 -0.0001 0.0073 9 6 3.5806 -1.1971 0.0020 10 6 2.1981 -1.1970 0.0005 11 16 1.3170 -2.7229 0.0005 12 8 0.9077 -2.9499 1.3422 13 8 0.4076 -2.6612 -1.0897 14 7 2.4048 -3.9170 -0.3648 15 6 2.5598 -4.3676 -1.7502 16 6 3.7208 -3.6472 -2.3859 17 1 4.2863 -2.9254 -1.8152 18 6 4.0610 -3.9094 -3.6960 19 7 3.3727 -4.7886 -4.3908 20 14 5.4998 -3.0157 -4.4841 21 1 6.7415 -3.3107 -3.7250 22 1 5.6570 -3.4726 -5.8884 23 1 5.2439 -1.5530 -4.4657 24 6 3.1743 -4.4944 0.6477 25 6 3.4595 -3.7750 1.8013 26 6 4.2167 -4.3509 2.8026 27 6 4.6996 -5.6379 2.6531 28 6 4.4219 -6.3549 1.5038 29 6 3.6613 -5.7870 0.5006 30 1 -0.3634 0.0276 1.0272 31 1 -0.3633 0.8759 -0.5376 32 1 -0.3633 -0.9035 -0.4898 33 1 1.6584 2.1326 -0.0004 34 1 5.3517 -0.0001 0.0126 35 1 4.1206 -2.1323 0.0031 36 1 2.7469 -5.4413 -1.7642 37 1 1.6484 -4.1504 -2.3072 38 1 3.6119 -4.9727 -5.3126 39 1 3.0862 -2.7683 1.9169 40 1 4.4354 -3.7936 3.7016 41 1 5.2952 -6.0842 3.4358 42 1 4.8010 -7.3597 1.3900 43 1 3.4452 -6.3473 -0.3970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069845373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:29 Heat of formation + Delta-G solvation = -8.894601 kcal Electronic energy + Delta-G solvation = -33161.264449 eV Core-core repulsion = 28688.491658 eV Total energy + Delta-G solvation = -4472.772791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.34511 -39.80772 -39.33816 -37.15945 -36.72517 -35.90979 -35.81776 -33.55359 -32.86858 -32.27769 -30.72150 -29.48531 -27.64225 -27.03809 -26.96052 -23.66744 -23.12874 -22.63123 -22.03217 -21.37539 -19.28762 -19.05577 -18.79141 -18.34079 -17.69530 -17.33052 -16.84984 -16.74968 -15.76248 -15.68829 -15.20547 -14.91202 -14.52726 -14.31838 -14.28501 -14.11635 -13.83851 -13.74372 -13.23334 -13.20485 -12.87014 -12.66858 -12.44545 -12.33609 -11.93818 -11.89765 -11.72902 -11.67125 -11.50424 -11.44698 -11.42525 -11.27548 -11.17615 -10.93438 -10.92501 -10.73643 -10.49832 -10.27141 -10.04804 -9.42233 -9.31302 -8.72016 -8.70778 -7.72482 -6.35171 -4.44499 -0.53159 0.37369 0.71693 1.02217 1.18857 1.60071 1.68325 2.82445 2.88795 3.13243 3.19294 3.21396 3.58192 4.00859 4.08511 4.18774 4.21060 4.49014 4.59499 4.68336 4.84143 4.93477 5.01916 5.04245 5.10577 5.23917 5.26646 5.32731 5.37205 5.47787 5.49757 5.58573 5.65399 5.78203 5.81903 6.02197 6.07554 6.25568 6.27986 6.50645 6.71511 6.79133 6.93806 7.01165 7.05387 7.42448 7.48597 7.56252 7.78975 8.55758 9.23354 10.72579 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.007034 B = 0.004708 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3979.637226 B = 5946.517819 C = 7134.320838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.020 3.980 3 C -0.081 4.081 4 C 0.004 3.996 5 N 0.025 4.975 6 O -0.156 6.156 7 O -0.151 6.151 8 C -0.080 4.080 9 C -0.009 4.009 10 C -0.625 4.625 11 S 2.687 3.313 12 O -0.947 6.947 13 O -0.931 6.931 14 N -0.922 5.922 15 C 0.231 3.769 16 C -0.553 4.553 17 H 0.063 0.937 18 C 0.074 3.926 19 N -0.882 5.882 20 Si 0.892 3.108 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.275 1.275 24 C 0.193 3.807 25 C -0.181 4.181 26 C -0.086 4.086 27 C -0.155 4.155 28 C -0.091 4.091 29 C -0.131 4.131 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.269 0.731 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.169 3.685 11.413 12.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.018 3.982 3 C -0.100 4.100 4 C -0.078 4.078 5 N 0.546 4.454 6 O -0.372 6.372 7 O -0.369 6.369 8 C -0.100 4.100 9 C -0.028 4.028 10 C -0.708 4.708 11 S 2.775 3.225 12 O -0.937 6.937 13 O -0.921 6.921 14 N -0.749 5.749 15 C 0.111 3.889 16 C -0.592 4.592 17 H 0.081 0.919 18 C -0.131 4.131 19 N -0.519 5.519 20 Si 0.718 3.282 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.201 1.201 24 C 0.096 3.904 25 C -0.202 4.202 26 C -0.104 4.104 27 C -0.174 4.174 28 C -0.110 4.110 29 C -0.153 4.153 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.178 0.822 34 H 0.179 0.821 35 H 0.186 0.814 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.495 2.945 11.269 11.912 hybrid contribution 1.811 1.415 -0.845 2.449 sum -0.684 4.361 10.424 11.320 Atomic orbital electron populations 1.21589 0.88830 1.07230 1.04836 1.19396 0.96770 0.90106 0.91955 1.20930 0.91034 1.00183 0.97902 1.21326 0.92654 0.83774 1.10084 1.43657 1.01327 1.02786 0.97647 1.94529 1.70052 1.19606 1.53034 1.94554 0.95341 1.94169 1.52808 1.21151 1.02442 0.89670 0.96710 1.21260 0.91856 0.99301 0.90381 1.31600 1.06970 1.21487 1.10729 1.02572 0.73389 0.72677 0.73842 1.93638 1.79887 1.84209 1.35998 1.93601 1.58525 1.85753 1.54240 1.55603 1.53749 1.49062 1.16477 1.19708 0.99442 0.97888 0.71856 1.21341 1.15188 1.25253 0.97409 0.91913 1.24862 0.96644 0.94860 0.96762 1.69888 1.39367 1.32392 1.10250 0.86647 0.82594 0.80149 0.78778 1.19716 1.20740 1.20057 1.17536 0.92678 0.92775 0.87445 1.20992 1.03628 1.00159 0.95464 1.20757 0.96635 0.95312 0.97722 1.20990 1.02798 0.95222 0.98440 1.20996 0.97221 0.99597 0.93175 1.21030 1.00244 0.93534 1.00450 0.88556 0.88516 0.88161 0.82169 0.82098 0.81447 0.92519 0.91703 0.92089 0.86539 0.86039 0.86366 0.85895 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.58 36.01 0.34 -1.65 16 2 C 0.02 0.28 5.88 -104.62 -0.61 -0.33 16 3 C -0.08 -1.06 9.22 -39.59 -0.36 -1.43 16 4 C 0.00 0.06 6.85 -79.95 -0.55 -0.49 16 5 N 0.02 0.37 4.45 33.96 0.15 0.52 16 6 O -0.16 -2.34 18.45 -29.46 -0.54 -2.88 16 7 O -0.15 -2.36 18.45 -29.46 -0.54 -2.90 16 8 C -0.08 -1.15 9.56 -39.58 -0.38 -1.53 16 9 C -0.01 -0.14 7.53 -39.59 -0.30 -0.44 16 10 C -0.63 -10.12 5.40 -39.58 -0.21 -10.34 16 11 S 2.69 48.67 4.15 -107.50 -0.45 48.22 16 12 O -0.95 -17.30 15.57 -57.17 -0.89 -18.19 16 13 O -0.93 -18.78 14.20 -57.17 -0.81 -19.59 16 14 N -0.92 -17.54 2.21 -59.81 -0.13 -17.67 16 15 C 0.23 5.14 5.17 -5.19 -0.03 5.12 16 16 C -0.55 -13.28 9.35 -34.44 -0.32 -13.60 16 17 H 0.06 1.42 5.77 -52.49 -0.30 1.12 16 18 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 19 N -0.88 -23.41 13.29 55.43 0.74 -22.68 16 20 Si 0.89 19.83 29.54 -169.99 -5.02 14.81 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 C 0.19 3.35 5.48 -83.79 -0.46 2.89 16 25 C -0.18 -2.81 7.18 -39.38 -0.28 -3.10 16 26 C -0.09 -1.13 10.04 -39.61 -0.40 -1.53 16 27 C -0.16 -1.93 10.04 -39.55 -0.40 -2.33 16 28 C -0.09 -1.23 10.04 -39.61 -0.40 -1.62 16 29 C -0.13 -2.13 9.36 -39.38 -0.37 -2.50 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 0.87 8.10 -51.93 -0.42 0.45 16 32 H 0.10 1.38 5.03 -51.93 -0.26 1.12 16 33 H 0.16 1.67 7.61 -52.49 -0.40 1.27 16 34 H 0.16 2.01 7.61 -52.49 -0.40 1.61 16 35 H 0.17 2.62 4.51 -52.49 -0.24 2.38 16 36 H 0.06 1.27 6.08 -51.93 -0.32 0.96 16 37 H 0.07 1.57 6.86 -51.93 -0.36 1.22 16 38 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.12 1.74 4.91 -52.49 -0.26 1.48 16 40 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 41 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 42 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 43 H 0.14 2.28 6.24 -52.49 -0.33 1.95 16 LS Contribution 371.09 15.07 5.59 5.59 Total: -1.00 -29.18 371.09 -10.83 -40.01 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -4.10 Total: 5.86 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: -4.82 Total: -31.10 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.76 Total: -39.83 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -2.79 Total: -43.57 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 16 Polarization: 48.67 SS G_CDS: -0.45 Total: 48.22 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.18 -10.83 -40.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069845373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.118 kcal (2) G-P(sol) polarization free energy of solvation -29.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds