Wall clock time and date at job start Tue Mar 31 2020 06:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00096 * 2 1 4 4 C 1.38209 * 119.99915 * 179.97438 * 3 2 1 5 5 N 1.48017 * 120.00065 * 179.97438 * 4 3 2 6 6 O 1.21804 * 119.99868 * 359.97438 * 5 4 3 7 7 O 1.21801 * 120.00358 * 180.02562 * 5 4 3 8 8 C 1.38264 * 119.99921 * 359.70141 * 4 3 2 9 9 C 1.38211 * 120.00039 * 0.55288 * 8 4 3 10 10 C 1.38218 * 120.00022 * 179.97438 * 2 1 3 11 11 S 1.76204 * 119.99578 * 0.02562 * 10 2 1 12 12 O 1.42096 * 106.40157 * 280.15510 * 11 10 2 13 13 O 1.42101 * 106.40287 * 53.08013 * 11 10 2 14 14 N 1.65607 * 107.21469 * 166.61964 * 11 10 2 15 15 C 1.46502 * 119.99592 * 265.45856 * 14 11 10 16 16 C 1.50705 * 109.47209 * 96.16768 * 15 14 11 17 17 H 1.08001 * 119.99738 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00049 * 179.97438 * 16 15 14 19 19 N 1.31508 * 119.99851 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99678 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47109 * 59.99871 * 20 18 16 22 22 H 1.48506 * 109.46672 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46973 * 299.99654 * 20 18 16 24 24 C 1.39673 * 120.00240 * 85.46055 * 14 11 10 25 25 C 1.38915 * 120.06921 * 333.77363 * 24 14 11 26 26 C 1.38107 * 119.91543 * 179.76679 * 25 24 14 27 27 C 1.38280 * 120.07794 * 0.51548 * 26 25 24 28 28 C 1.38281 * 120.15197 * 359.73922 * 27 26 25 29 29 C 1.38103 * 120.07302 * 0.02562 * 28 27 26 30 30 H 1.08997 * 109.47387 * 271.54055 * 1 2 3 31 31 H 1.08998 * 109.46797 * 31.53949 * 1 2 3 32 32 H 1.09005 * 109.46779 * 151.53772 * 1 2 3 33 33 H 1.07995 * 120.00104 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.99673 * 180.29536 * 8 4 3 35 35 H 1.07993 * 119.99724 * 179.74327 * 9 8 4 36 36 H 1.08996 * 109.46960 * 216.16142 * 15 14 11 37 37 H 1.08995 * 109.47786 * 336.16324 * 15 14 11 38 38 H 0.97003 * 119.99663 * 179.97438 * 19 18 16 39 39 H 1.07991 * 120.04218 * 0.02562 * 25 24 14 40 40 H 1.08007 * 119.95796 * 180.25314 * 26 25 24 41 41 H 1.08006 * 119.92519 * 179.72033 * 27 26 25 42 42 H 1.07996 * 119.96494 * 179.97438 * 28 27 26 43 43 H 1.07998 * 120.03970 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 7 4.3205 2.4791 0.0000 6 8 3.7116 3.5340 -0.0015 7 8 5.5386 2.4791 0.0000 8 6 4.2717 -0.0001 0.0073 9 6 3.5806 -1.1971 0.0020 10 6 2.1981 -1.1970 0.0005 11 16 1.3170 -2.7229 0.0005 12 8 0.9077 -2.9499 1.3422 13 8 0.4076 -2.6612 -1.0897 14 7 2.4048 -3.9170 -0.3648 15 6 2.5598 -4.3676 -1.7502 16 6 3.7208 -3.6472 -2.3859 17 1 4.2863 -2.9254 -1.8152 18 6 4.0610 -3.9094 -3.6960 19 7 3.3727 -4.7886 -4.3908 20 14 5.4998 -3.0157 -4.4841 21 1 6.7415 -3.3107 -3.7250 22 1 5.6570 -3.4726 -5.8884 23 1 5.2439 -1.5530 -4.4657 24 6 3.1743 -4.4944 0.6477 25 6 3.4595 -3.7750 1.8013 26 6 4.2167 -4.3509 2.8026 27 6 4.6996 -5.6379 2.6531 28 6 4.4219 -6.3549 1.5038 29 6 3.6613 -5.7870 0.5006 30 1 -0.3634 0.0276 1.0272 31 1 -0.3633 0.8759 -0.5376 32 1 -0.3633 -0.9035 -0.4898 33 1 1.6584 2.1326 -0.0004 34 1 5.3517 -0.0001 0.0126 35 1 4.1206 -2.1323 0.0031 36 1 2.7469 -5.4413 -1.7642 37 1 1.6484 -4.1504 -2.3072 38 1 3.6119 -4.9727 -5.3126 39 1 3.0862 -2.7683 1.9169 40 1 4.4354 -3.7936 3.7016 41 1 5.2952 -6.0842 3.4358 42 1 4.8010 -7.3597 1.3900 43 1 3.4452 -6.3473 -0.3970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069845373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:27 Heat of formation + Delta-G solvation = -23.646935 kcal Electronic energy + Delta-G solvation = -33161.904158 eV Core-core repulsion = 28688.491658 eV Total energy + Delta-G solvation = -4473.412501 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.50854 -40.94736 -40.54042 -38.63160 -37.90012 -37.36505 -37.20269 -34.75886 -34.58608 -33.43795 -31.86774 -30.84249 -28.80218 -28.50537 -28.16819 -25.25302 -24.34055 -23.83843 -23.15429 -22.68781 -20.58971 -20.23858 -19.94702 -19.62747 -18.86370 -18.77979 -18.51459 -18.17408 -17.00956 -16.91107 -16.67696 -16.15241 -16.02542 -15.52568 -15.40365 -15.32683 -15.07857 -14.80018 -14.71308 -14.39183 -14.20503 -13.86562 -13.77877 -13.61614 -13.38647 -13.23449 -13.05746 -13.03257 -12.95720 -12.83131 -12.69850 -12.56820 -12.45818 -12.36385 -12.28789 -12.20007 -12.07297 -11.75430 -11.24651 -10.98917 -10.65679 -10.41858 -9.83462 -9.02297 -8.26926 -6.41341 -1.70497 -1.02109 -0.38230 -0.16221 0.03140 0.47003 0.54211 1.36364 1.37020 1.42365 1.46855 1.73059 2.22153 2.32877 2.91150 2.97056 3.05335 3.13122 3.23277 3.44758 3.47846 3.69697 3.80057 3.97741 3.99638 4.18588 4.22703 4.25686 4.37147 4.40270 4.45980 4.55343 4.61190 4.63639 4.80204 4.84003 4.94360 5.08596 5.10607 5.16197 5.19225 5.50377 5.58505 5.67740 5.68879 5.73712 5.91100 6.20266 6.30332 6.66353 7.28627 8.80229 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.007034 B = 0.004708 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3979.637226 B = 5946.517819 C = 7134.320838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.018 3.982 3 C -0.069 4.069 4 C -0.002 4.002 5 N 0.025 4.975 6 O -0.144 6.144 7 O -0.169 6.169 8 C -0.082 4.082 9 C -0.018 4.018 10 C -0.639 4.639 11 S 2.696 3.304 12 O -0.954 6.954 13 O -0.962 6.962 14 N -0.927 5.927 15 C 0.244 3.756 16 C -0.552 4.552 17 H 0.073 0.927 18 C 0.025 3.975 19 N -0.918 5.918 20 Si 0.945 3.055 21 H -0.261 1.261 22 H -0.282 1.282 23 H -0.275 1.275 24 C 0.161 3.839 25 C -0.192 4.192 26 C -0.085 4.085 27 C -0.144 4.144 28 C -0.090 4.090 29 C -0.155 4.155 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.077 0.923 33 H 0.193 0.807 34 H 0.177 0.823 35 H 0.163 0.837 36 H 0.047 0.953 37 H 0.037 0.963 38 H 0.269 0.731 39 H 0.118 0.882 40 H 0.154 0.846 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.110 5.191 13.467 14.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.015 3.985 3 C -0.089 4.089 4 C -0.084 4.084 5 N 0.546 4.454 6 O -0.364 6.364 7 O -0.382 6.382 8 C -0.101 4.101 9 C -0.037 4.037 10 C -0.725 4.725 11 S 2.787 3.213 12 O -0.945 6.945 13 O -0.953 6.953 14 N -0.754 5.754 15 C 0.123 3.877 16 C -0.591 4.591 17 H 0.091 0.909 18 C -0.176 4.176 19 N -0.556 5.556 20 Si 0.770 3.230 21 H -0.186 1.186 22 H -0.208 1.208 23 H -0.200 1.200 24 C 0.065 3.935 25 C -0.213 4.213 26 C -0.103 4.103 27 C -0.162 4.162 28 C -0.108 4.108 29 C -0.177 4.177 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.095 0.905 33 H 0.210 0.790 34 H 0.194 0.806 35 H 0.180 0.820 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.136 0.864 40 H 0.172 0.828 41 H 0.175 0.825 42 H 0.167 0.833 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.181 4.395 13.356 14.110 hybrid contribution 1.377 0.981 -1.348 2.162 sum 0.196 5.376 12.008 13.158 Atomic orbital electron populations 1.21771 0.87254 1.07590 1.06656 1.19724 0.98018 0.89640 0.91080 1.21249 0.90597 1.00954 0.96050 1.21473 0.93217 0.83492 1.10239 1.43715 1.01296 1.02912 0.97511 1.94516 1.69948 1.19752 1.52228 1.94563 0.95579 1.94263 1.53838 1.21277 1.03283 0.89230 0.96329 1.21217 0.91652 0.99654 0.91190 1.31298 1.07308 1.20977 1.12926 1.02002 0.73073 0.73011 0.73189 1.93610 1.80245 1.84695 1.35909 1.93564 1.60069 1.86420 1.55218 1.55361 1.54537 1.50003 1.15501 1.19244 0.97630 0.97253 0.73586 1.21706 1.15150 1.24772 0.97436 0.90863 1.25601 0.98856 0.95644 0.97526 1.70001 1.41048 1.34094 1.10483 0.85804 0.80361 0.78896 0.77979 1.18581 1.20769 1.20045 1.17820 0.94080 0.93632 0.87937 1.21164 1.04324 1.00357 0.95495 1.21210 0.95238 0.95900 0.97956 1.21450 1.01641 0.94631 0.98518 1.21340 0.96019 1.00798 0.92658 1.21109 1.01912 0.93557 1.01122 0.86111 0.85260 0.90478 0.78964 0.80562 0.82002 0.93549 0.94491 0.92218 0.86435 0.82823 0.82509 0.83269 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.88 9.58 71.24 0.68 -3.20 16 2 C 0.02 0.48 5.88 -19.86 -0.12 0.36 16 3 C -0.07 -1.63 9.22 22.27 0.21 -1.43 16 4 C 0.00 -0.05 6.85 36.37 0.25 0.20 16 5 N 0.02 0.70 4.45 -46.46 -0.21 0.49 16 6 O -0.14 -3.92 18.45 18.88 0.35 -3.58 16 7 O -0.17 -5.00 18.45 18.89 0.35 -4.65 16 8 C -0.08 -2.24 9.56 22.27 0.21 -2.02 16 9 C -0.02 -0.55 7.53 22.27 0.17 -0.38 16 10 C -0.64 -20.58 5.40 22.27 0.12 -20.46 16 11 S 2.70 100.91 4.15 -56.49 -0.23 100.68 16 12 O -0.95 -35.52 15.57 -128.00 -1.99 -37.51 16 13 O -0.96 -40.89 14.20 -128.00 -1.82 -42.71 16 14 N -0.93 -36.92 2.21 -343.13 -0.76 -37.68 16 15 C 0.24 11.54 5.17 85.63 0.44 11.98 16 16 C -0.55 -27.27 9.35 25.60 0.24 -27.03 16 17 H 0.07 3.38 5.77 -2.91 -0.02 3.36 16 18 C 0.03 1.29 5.46 84.65 0.46 1.75 16 19 N -0.92 -50.42 13.29 21.45 0.28 -50.13 16 20 Si 0.94 40.87 29.54 68.60 2.03 42.90 16 21 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 24 C 0.16 5.73 5.48 38.21 0.21 5.94 16 25 C -0.19 -5.85 7.18 22.40 0.16 -5.69 16 26 C -0.08 -2.01 10.04 22.25 0.22 -1.79 16 27 C -0.14 -3.09 10.04 22.29 0.22 -2.87 16 28 C -0.09 -2.27 10.04 22.25 0.22 -2.04 16 29 C -0.15 -5.16 9.36 22.40 0.21 -4.95 16 30 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.13 1.94 8.10 -2.39 -0.02 1.92 16 32 H 0.08 2.12 5.03 -2.38 -0.01 2.11 16 33 H 0.19 3.21 7.61 -2.91 -0.02 3.19 16 34 H 0.18 4.14 7.61 -2.91 -0.02 4.12 16 35 H 0.16 5.11 4.51 -2.91 -0.01 5.10 16 36 H 0.05 2.25 6.08 -2.39 -0.01 2.24 16 37 H 0.04 1.93 6.86 -2.39 -0.02 1.92 16 38 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 39 H 0.12 3.47 4.91 -2.92 -0.01 3.46 16 40 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 41 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 42 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 43 H 0.12 4.27 6.24 -2.91 -0.02 4.25 16 Total: -1.00 -64.81 371.09 3.01 -61.80 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 1.09 Total: 22.02 kcal Atomic # 6 Polarization: -55.55 SS G_CDS: 3.92 Total: -51.63 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -0.68 Total: -87.32 kcal Atomic # 8 Polarization: -85.33 SS G_CDS: -3.11 Total: -88.45 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: 100.91 SS G_CDS: -0.23 Total: 100.68 kcal Total: -64.81 3.01 -61.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069845373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.157 kcal (2) G-P(sol) polarization free energy of solvation -64.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds