Wall clock time and date at job start Tue Mar 31 2020 05:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39664 * 120.16357 * 45.62374 * 3 2 1 5 5 C 1.37903 * 119.85862 * 179.70732 * 4 3 2 6 6 C 1.38417 * 120.18636 * 0.53777 * 5 4 3 7 7 S 1.76199 * 119.83724 * 179.72742 * 6 5 4 8 8 O 1.42101 * 106.40175 * 156.18911 * 7 6 5 9 9 O 1.42102 * 106.40355 * 23.27093 * 7 6 5 10 10 N 1.65604 * 107.21830 * 269.72899 * 7 6 5 11 11 C 1.46501 * 120.00016 * 275.59448 * 10 7 6 12 12 C 1.50700 * 109.46702 * 264.99998 * 11 10 7 13 13 H 1.08000 * 120.00224 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99970 * 180.02562 * 12 11 10 15 15 N 1.31506 * 120.00105 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99548 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46955 * 90.00810 * 16 14 12 18 18 H 1.48503 * 109.47010 * 209.99957 * 16 14 12 19 19 H 1.48490 * 109.47550 * 330.00564 * 16 14 12 20 20 C 1.39670 * 119.99827 * 95.59473 * 10 7 6 21 21 C 1.38911 * 120.07825 * 60.08689 * 20 10 7 22 22 C 1.38105 * 119.92572 * 180.25494 * 21 20 10 23 23 C 1.38281 * 120.07287 * 359.44567 * 22 21 20 24 24 C 1.38288 * 120.15351 * 0.56003 * 23 22 21 25 25 C 1.38105 * 120.06987 * 359.72034 * 24 23 22 26 26 C 1.38287 * 120.32676 * 359.45646 * 6 5 4 27 27 C 1.38134 * 120.13319 * 0.27162 * 26 6 5 28 28 Cl 1.73595 * 120.09245 * 180.02562 * 27 26 6 29 29 H 1.07994 * 120.07289 * 359.96933 * 4 3 2 30 30 H 1.08001 * 119.90756 * 180.26649 * 5 4 3 31 31 H 1.09005 * 109.46957 * 24.99666 * 11 10 7 32 32 H 1.08996 * 109.47338 * 145.00323 * 11 10 7 33 33 H 0.97007 * 120.00100 * 179.97438 * 15 14 12 34 34 H 1.07999 * 120.03655 * 359.97438 * 21 20 10 35 35 H 1.07999 * 119.96153 * 179.72800 * 22 21 20 36 36 H 1.08002 * 119.92430 * 180.27425 * 23 22 21 37 37 H 1.07994 * 119.96604 * 179.73959 * 24 23 22 38 38 H 1.08002 * 120.03639 * 179.97438 * 25 24 23 39 39 H 1.07993 * 119.93477 * 180.25207 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2701 -0.8436 -0.8631 5 6 4.6491 -0.8334 -0.8621 6 6 5.3384 0.0025 -0.0008 7 16 7.1004 0.0028 -0.0022 8 8 7.5019 1.2662 0.5096 9 8 7.5007 -0.4824 -1.2764 10 7 7.5916 -1.1275 1.1040 11 6 7.6914 -0.7702 2.5213 12 6 9.1085 -0.3681 2.8393 13 1 9.8596 -0.3773 2.0633 14 6 9.4463 0.0115 4.1211 15 7 10.6830 0.3619 4.3987 16 14 8.1471 0.0280 5.4631 17 1 8.1094 -1.2973 6.1320 18 1 8.4793 1.0766 6.4608 19 1 6.8198 0.3178 4.8637 20 6 7.9108 -2.4213 0.6857 21 6 8.9340 -2.6238 -0.2317 22 6 9.2435 -3.9040 -0.6471 23 6 8.5437 -4.9846 -0.1422 24 6 7.5244 -4.7866 0.7712 25 6 7.2060 -3.5085 1.1865 26 6 4.6510 0.8416 0.8570 27 6 3.2696 0.8464 0.8633 28 17 2.4078 1.9007 1.9400 29 1 2.7343 -1.4998 -1.5328 30 1 5.1929 -1.4828 -1.5323 31 1 7.0210 0.0624 2.7342 32 1 7.4112 -1.6279 3.1328 33 1 10.9206 0.6294 5.3004 34 1 9.4838 -1.7807 -0.6231 35 1 10.0359 -4.0618 -1.3637 36 1 8.7907 -5.9851 -0.4654 37 1 6.9771 -5.6323 1.1604 38 1 6.4095 -3.3545 1.8996 39 1 5.1951 1.4942 1.5235 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069896514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:49 Heat of formation + Delta-G solvation = 22.038250 kcal Electronic energy + Delta-G solvation = -29187.169810 eV Core-core repulsion = 25020.614438 eV Total energy + Delta-G solvation = -4166.555372 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 376.043 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -39.99422 -39.17761 -37.05687 -36.93598 -36.89756 -35.67588 -35.55918 -32.58139 -32.16506 -31.42784 -30.66593 -29.71236 -27.28551 -24.99275 -23.46187 -22.89082 -22.33742 -21.44842 -19.64134 -19.25980 -18.08476 -17.41338 -16.89424 -16.62168 -16.38691 -15.65892 -15.52139 -14.89435 -14.80851 -14.61015 -14.50761 -14.26440 -14.15177 -13.76271 -13.31436 -13.30623 -13.17079 -12.99054 -12.77174 -12.59396 -12.24605 -12.11403 -12.05578 -11.85364 -11.82161 -11.64391 -11.57703 -11.44750 -11.16800 -10.96621 -10.76548 -10.67885 -10.38245 -9.85802 -9.71077 -9.35214 -9.03255 -8.69251 -8.64311 -7.98172 -6.16673 -4.17334 -0.26140 0.45406 0.61641 1.53422 1.62539 1.69249 2.15573 2.22093 3.05160 3.19270 3.21092 3.24375 3.26543 3.32722 3.89442 4.02503 4.08090 4.29243 4.43730 4.56281 4.71746 4.92225 5.10789 5.14464 5.18260 5.20674 5.27110 5.33428 5.45841 5.48942 5.59623 5.70653 5.84655 6.02288 6.09220 6.29725 6.46163 6.62059 6.67252 6.76050 6.89257 6.93976 6.98894 7.40965 7.47238 8.36841 8.87950 9.40336 10.96508 Molecular weight = 376.04amu Principal moments of inertia in cm(-1) A = 0.007823 B = 0.004340 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3578.549612 B = 6450.175807 C = 8449.921264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C 0.247 3.753 3 C 0.029 3.971 4 C -0.081 4.081 5 C -0.014 4.014 6 C -0.641 4.641 7 S 2.677 3.323 8 O -0.920 6.920 9 O -0.949 6.949 10 N -0.928 5.928 11 C 0.224 3.776 12 C -0.532 4.532 13 H 0.082 0.918 14 C 0.079 3.921 15 N -0.889 5.889 16 Si 0.866 3.134 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.263 1.263 20 C 0.164 3.836 21 C -0.100 4.100 22 C -0.110 4.110 23 C -0.129 4.129 24 C -0.115 4.115 25 C -0.122 4.122 26 C -0.008 4.008 27 C -0.019 4.019 28 Cl -0.041 7.041 29 H 0.153 0.847 30 H 0.159 0.841 31 H 0.038 0.962 32 H 0.037 0.963 33 H 0.266 0.734 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.338 -6.535 -9.862 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.061 5.061 2 C -0.069 4.069 3 C 0.025 3.975 4 C -0.102 4.102 5 C -0.033 4.033 6 C -0.724 4.724 7 S 2.766 3.234 8 O -0.910 6.910 9 O -0.939 6.939 10 N -0.760 5.760 11 C 0.103 3.897 12 C -0.571 4.571 13 H 0.100 0.900 14 C -0.125 4.125 15 N -0.527 5.527 16 Si 0.692 3.308 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.188 1.188 20 C 0.070 3.930 21 C -0.121 4.121 22 C -0.128 4.128 23 C -0.147 4.147 24 C -0.134 4.134 25 C -0.143 4.143 26 C -0.027 4.027 27 C -0.049 4.049 28 Cl -0.012 7.012 29 H 0.171 0.829 30 H 0.177 0.823 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -13.606 -5.740 -10.073 17.876 hybrid contribution -0.879 0.017 1.367 1.625 sum -14.485 -5.722 -8.706 17.843 Atomic orbital electron populations 1.81248 1.11515 1.06654 1.06662 1.25330 0.92301 0.94640 0.94623 1.16042 0.84847 0.98409 0.98209 1.21316 0.94212 0.97368 0.97337 1.21037 0.93836 0.94133 0.94285 1.31891 1.29879 1.05509 1.05119 1.02858 0.73268 0.74009 0.73291 1.93667 1.79108 1.38763 1.79453 1.93576 1.80254 1.80978 1.39141 1.55172 1.77593 1.21078 1.22124 1.19728 0.99458 0.96075 0.74479 1.21221 0.93223 1.45799 0.96850 0.90011 1.24798 0.95181 0.94393 0.98135 1.69868 1.17498 1.44449 1.20841 0.87024 0.82622 0.78509 0.82655 1.19876 1.20640 1.18776 1.17297 0.94852 0.84035 0.96828 1.21400 0.94908 0.97978 0.97772 1.20974 0.99820 0.92031 1.00004 1.21088 0.96863 0.98606 0.98182 1.20923 0.98156 0.96261 0.98086 1.21226 1.00044 0.92190 1.00875 1.20932 0.91607 0.95022 0.95182 1.21009 0.92730 0.95805 0.95368 1.98425 1.76236 1.63955 1.62570 0.82946 0.82295 0.94465 0.94501 0.92344 0.85393 0.85895 0.86362 0.86169 0.85838 0.81705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.84 18.54 41.84 0.78 -4.07 16 2 C 0.25 2.70 14.38 -22.47 -0.32 2.38 16 3 C 0.03 0.30 5.73 -106.87 -0.61 -0.32 16 4 C -0.08 -0.68 9.76 -39.17 -0.38 -1.06 16 5 C -0.01 -0.14 9.50 -39.64 -0.38 -0.51 16 6 C -0.64 -8.26 5.98 -39.50 -0.24 -8.50 16 7 S 2.68 45.21 5.54 -107.50 -0.60 44.61 16 8 O -0.92 -18.72 16.44 -57.17 -0.94 -19.66 16 9 O -0.95 -16.13 14.88 -57.17 -0.85 -16.98 16 10 N -0.93 -16.92 2.83 -59.81 -0.17 -17.09 16 11 C 0.22 4.74 4.08 -5.19 -0.02 4.72 16 12 C -0.53 -14.08 9.92 -34.44 -0.34 -14.43 16 13 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 14 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 15 N -0.89 -26.08 13.96 55.43 0.77 -25.31 16 16 Si 0.87 19.77 27.47 -169.99 -4.67 15.10 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.26 -5.53 6.54 56.52 0.37 -5.16 16 20 C 0.16 2.76 5.24 -83.79 -0.44 2.32 16 21 C -0.10 -1.63 8.61 -39.38 -0.34 -1.97 16 22 C -0.11 -1.47 10.04 -39.61 -0.40 -1.87 16 23 C -0.13 -1.53 10.04 -39.55 -0.40 -1.93 16 24 C -0.12 -1.40 10.04 -39.61 -0.40 -1.80 16 25 C -0.12 -1.73 9.41 -39.38 -0.37 -2.10 16 26 C -0.01 -0.10 9.29 -39.60 -0.37 -0.47 16 27 C -0.02 -0.22 6.35 -39.06 -0.25 -0.47 16 28 Cl -0.04 -0.47 28.03 -51.86 -1.45 -1.93 16 29 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 30 H 0.16 1.33 7.60 -52.49 -0.40 0.94 16 31 H 0.04 0.76 6.82 -51.93 -0.35 0.41 16 32 H 0.04 0.74 6.99 -51.93 -0.36 0.38 16 33 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.13 2.19 7.52 -52.49 -0.39 1.79 16 35 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.12 1.57 7.94 -52.49 -0.42 1.16 16 39 H 0.17 2.11 7.60 -52.49 -0.40 1.71 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -32.14 375.35 -10.43 -42.57 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -3.61 Total: 1.04 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -5.35 Total: -23.95 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 1.38 Total: -46.46 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -1.79 Total: -36.64 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.67 Total: 15.10 kcal Atomic # 16 Polarization: 45.21 SS G_CDS: -0.60 Total: 44.61 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.45 Total: -1.93 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.14 -10.43 -42.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069896514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.607 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds