Wall clock time and date at job start Tue Mar 31 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39664 * 120.16357 * 45.62374 * 3 2 1 5 5 C 1.37903 * 119.85862 * 179.70732 * 4 3 2 6 6 C 1.38417 * 120.18636 * 0.53777 * 5 4 3 7 7 S 1.76199 * 119.83724 * 179.72742 * 6 5 4 8 8 O 1.42101 * 106.40175 * 156.18911 * 7 6 5 9 9 O 1.42102 * 106.40355 * 23.27093 * 7 6 5 10 10 N 1.65604 * 107.21830 * 269.72899 * 7 6 5 11 11 C 1.46501 * 120.00016 * 275.59448 * 10 7 6 12 12 C 1.50700 * 109.46702 * 264.99998 * 11 10 7 13 13 H 1.08000 * 120.00224 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99970 * 180.02562 * 12 11 10 15 15 N 1.31506 * 120.00105 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99548 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46955 * 90.00810 * 16 14 12 18 18 H 1.48503 * 109.47010 * 209.99957 * 16 14 12 19 19 H 1.48490 * 109.47550 * 330.00564 * 16 14 12 20 20 C 1.39670 * 119.99827 * 95.59473 * 10 7 6 21 21 C 1.38911 * 120.07825 * 60.08689 * 20 10 7 22 22 C 1.38105 * 119.92572 * 180.25494 * 21 20 10 23 23 C 1.38281 * 120.07287 * 359.44567 * 22 21 20 24 24 C 1.38288 * 120.15351 * 0.56003 * 23 22 21 25 25 C 1.38105 * 120.06987 * 359.72034 * 24 23 22 26 26 C 1.38287 * 120.32676 * 359.45646 * 6 5 4 27 27 C 1.38134 * 120.13319 * 0.27162 * 26 6 5 28 28 Cl 1.73595 * 120.09245 * 180.02562 * 27 26 6 29 29 H 1.07994 * 120.07289 * 359.96933 * 4 3 2 30 30 H 1.08001 * 119.90756 * 180.26649 * 5 4 3 31 31 H 1.09005 * 109.46957 * 24.99666 * 11 10 7 32 32 H 1.08996 * 109.47338 * 145.00323 * 11 10 7 33 33 H 0.97007 * 120.00100 * 179.97438 * 15 14 12 34 34 H 1.07999 * 120.03655 * 359.97438 * 21 20 10 35 35 H 1.07999 * 119.96153 * 179.72800 * 22 21 20 36 36 H 1.08002 * 119.92430 * 180.27425 * 23 22 21 37 37 H 1.07994 * 119.96604 * 179.73959 * 24 23 22 38 38 H 1.08002 * 120.03639 * 179.97438 * 25 24 23 39 39 H 1.07993 * 119.93477 * 180.25207 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2701 -0.8436 -0.8631 5 6 4.6491 -0.8334 -0.8621 6 6 5.3384 0.0025 -0.0008 7 16 7.1004 0.0028 -0.0022 8 8 7.5019 1.2662 0.5096 9 8 7.5007 -0.4824 -1.2764 10 7 7.5916 -1.1275 1.1040 11 6 7.6914 -0.7702 2.5213 12 6 9.1085 -0.3681 2.8393 13 1 9.8596 -0.3773 2.0633 14 6 9.4463 0.0115 4.1211 15 7 10.6830 0.3619 4.3987 16 14 8.1471 0.0280 5.4631 17 1 8.1094 -1.2973 6.1320 18 1 8.4793 1.0766 6.4608 19 1 6.8198 0.3178 4.8637 20 6 7.9108 -2.4213 0.6857 21 6 8.9340 -2.6238 -0.2317 22 6 9.2435 -3.9040 -0.6471 23 6 8.5437 -4.9846 -0.1422 24 6 7.5244 -4.7866 0.7712 25 6 7.2060 -3.5085 1.1865 26 6 4.6510 0.8416 0.8570 27 6 3.2696 0.8464 0.8633 28 17 2.4078 1.9007 1.9400 29 1 2.7343 -1.4998 -1.5328 30 1 5.1929 -1.4828 -1.5323 31 1 7.0210 0.0624 2.7342 32 1 7.4112 -1.6279 3.1328 33 1 10.9206 0.6294 5.3004 34 1 9.4838 -1.7807 -0.6231 35 1 10.0359 -4.0618 -1.3637 36 1 8.7907 -5.9851 -0.4654 37 1 6.9771 -5.6323 1.1604 38 1 6.4095 -3.3545 1.8996 39 1 5.1951 1.4942 1.5235 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069896514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:48 Heat of formation + Delta-G solvation = 2.591327 kcal Electronic energy + Delta-G solvation = -29188.013092 eV Core-core repulsion = 25020.614438 eV Total energy + Delta-G solvation = -4167.398654 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 376.043 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.87320 -40.30428 -38.43456 -37.84694 -37.80555 -37.03522 -36.96144 -34.55223 -33.07680 -32.28677 -31.72486 -31.12217 -28.87070 -25.94012 -24.56851 -24.24835 -23.46606 -22.74753 -20.51360 -20.45744 -19.27439 -19.07995 -18.46654 -17.85158 -17.46875 -16.86068 -16.47358 -16.18559 -15.86569 -15.73745 -15.69655 -15.49259 -15.06240 -14.97021 -14.50243 -14.28665 -14.22406 -14.20984 -14.12791 -13.91530 -13.58277 -13.38300 -13.26399 -13.09477 -13.00847 -12.92487 -12.85309 -12.60317 -12.47944 -12.35321 -12.10408 -11.98456 -11.79146 -11.69088 -10.76043 -10.73953 -10.46446 -10.20655 -9.71135 -9.20438 -8.25769 -6.31613 -1.19411 -0.79716 -0.22638 0.51997 0.62680 0.65582 1.29920 1.31289 1.38541 1.42063 1.50126 1.90334 2.31865 2.36705 2.36883 2.64311 2.94541 3.06999 3.12585 3.41283 3.76888 3.81567 3.94647 4.07553 4.22777 4.24051 4.34584 4.42133 4.43438 4.62608 4.68955 4.70204 4.74882 4.81773 4.90450 5.09065 5.21705 5.26128 5.45191 5.56441 5.72737 5.74901 5.83908 6.09359 6.26096 6.35033 6.71554 7.30215 8.91663 Molecular weight = 376.04amu Principal moments of inertia in cm(-1) A = 0.007823 B = 0.004340 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3578.549612 B = 6450.175807 C = 8449.921264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.266 3.734 3 C 0.036 3.964 4 C -0.054 4.054 5 C -0.007 4.007 6 C -0.639 4.639 7 S 2.680 3.320 8 O -0.971 6.971 9 O -0.960 6.960 10 N -0.934 5.934 11 C 0.230 3.770 12 C -0.537 4.537 13 H 0.030 0.970 14 C 0.013 3.987 15 N -0.946 5.946 16 Si 0.932 3.068 17 H -0.256 1.256 18 H -0.285 1.285 19 H -0.231 1.231 20 C 0.133 3.867 21 C -0.134 4.134 22 C -0.115 4.115 23 C -0.120 4.120 24 C -0.107 4.107 25 C -0.127 4.127 26 C -0.021 4.021 27 C -0.021 4.021 28 Cl -0.044 7.044 29 H 0.197 0.803 30 H 0.179 0.821 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.267 0.733 34 H 0.100 0.900 35 H 0.142 0.858 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.140 0.860 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.967 -9.710 -10.231 21.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.050 4.050 3 C 0.032 3.968 4 C -0.075 4.075 5 C -0.026 4.026 6 C -0.728 4.728 7 S 2.774 3.226 8 O -0.962 6.962 9 O -0.950 6.950 10 N -0.764 5.764 11 C 0.107 3.893 12 C -0.576 4.576 13 H 0.048 0.952 14 C -0.185 4.185 15 N -0.586 5.586 16 Si 0.753 3.247 17 H -0.181 1.181 18 H -0.211 1.211 19 H -0.154 1.154 20 C 0.039 3.961 21 C -0.155 4.155 22 C -0.133 4.133 23 C -0.138 4.138 24 C -0.126 4.126 25 C -0.148 4.148 26 C -0.041 4.041 27 C -0.051 4.051 28 Cl -0.015 7.015 29 H 0.215 0.785 30 H 0.196 0.804 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.159 0.841 36 H 0.173 0.827 37 H 0.176 0.824 38 H 0.158 0.842 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -17.187 -8.938 -10.474 22.023 hybrid contribution 0.277 0.931 1.305 1.627 sum -16.911 -8.008 -9.169 20.837 Atomic orbital electron populations 1.81285 1.12302 1.07512 1.07518 1.25250 0.92106 0.93825 0.93809 1.16114 0.84449 0.98226 0.98026 1.21721 0.93224 0.96250 0.96265 1.21330 0.94705 0.93196 0.93350 1.31109 1.26517 1.07779 1.07370 1.02257 0.74733 0.72836 0.72754 1.93602 1.81273 1.41145 1.80136 1.93547 1.81516 1.80769 1.39202 1.54970 1.78687 1.22067 1.20707 1.19487 0.95963 0.97023 0.76798 1.21538 0.95159 1.45185 0.95709 0.95152 1.25818 0.97593 0.93954 1.01142 1.70057 1.20324 1.46673 1.21577 0.85959 0.80748 0.79093 0.78883 1.18079 1.21109 1.15367 1.17598 0.96210 0.84069 0.98210 1.21445 0.95875 0.98712 0.99488 1.21265 1.00469 0.91306 1.00298 1.21538 0.95701 0.99587 0.96979 1.21389 0.97751 0.96394 0.97027 1.21468 1.00162 0.92181 1.00984 1.20827 0.92251 0.95407 0.95604 1.20949 0.92184 0.96189 0.95794 1.98426 1.76058 1.64212 1.62815 0.78543 0.80387 0.93370 0.92356 0.92394 0.88217 0.84064 0.82651 0.82412 0.84239 0.82712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -9.24 18.54 19.00 0.35 -8.88 16 2 C 0.27 4.96 14.38 88.33 1.27 6.23 16 3 C 0.04 0.61 5.73 -21.32 -0.12 0.49 16 4 C -0.05 -0.65 9.76 22.53 0.22 -0.43 16 5 C -0.01 -0.11 9.50 22.23 0.21 0.10 16 6 C -0.64 -15.79 5.98 22.32 0.13 -15.66 16 7 S 2.68 94.05 5.54 -56.49 -0.31 93.74 16 8 O -0.97 -42.33 16.44 -128.00 -2.10 -44.44 16 9 O -0.96 -33.99 14.88 -128.00 -1.90 -35.90 16 10 N -0.93 -34.90 2.83 -343.13 -0.97 -35.87 16 11 C 0.23 9.84 4.08 85.63 0.35 10.19 16 12 C -0.54 -29.92 9.92 25.60 0.25 -29.66 16 13 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 14 C 0.01 0.74 5.47 84.66 0.46 1.20 16 15 N -0.95 -58.52 13.96 21.45 0.30 -58.22 16 16 Si 0.93 40.67 27.47 68.60 1.88 42.56 16 17 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 18 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.23 -8.79 6.54 99.48 0.65 -8.14 16 20 C 0.13 4.46 5.24 38.22 0.20 4.67 16 21 C -0.13 -4.57 8.61 22.40 0.19 -4.38 16 22 C -0.11 -2.97 10.04 22.25 0.22 -2.75 16 23 C -0.12 -2.42 10.04 22.29 0.22 -2.20 16 24 C -0.11 -2.17 10.04 22.25 0.22 -1.94 16 25 C -0.13 -3.30 9.41 22.40 0.21 -3.09 16 26 C -0.02 -0.51 9.29 22.26 0.21 -0.31 16 27 C -0.02 -0.44 6.35 22.61 0.14 -0.29 16 28 Cl -0.04 -0.96 28.03 -2.72 -0.08 -1.04 16 29 H 0.20 0.74 8.06 -2.91 -0.02 0.72 16 30 H 0.18 2.38 7.60 -2.91 -0.02 2.36 16 31 H 0.05 1.96 6.82 -2.38 -0.02 1.94 16 32 H 0.06 2.25 6.99 -2.39 -0.02 2.23 16 33 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 34 H 0.10 3.81 7.52 -2.91 -0.02 3.78 16 35 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 36 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 37 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 38 H 0.14 3.09 7.94 -2.91 -0.02 3.07 16 39 H 0.16 4.05 7.60 -2.91 -0.02 4.03 16 Total: -1.00 -76.71 375.35 2.63 -74.08 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 1.05 Total: 11.80 kcal Atomic # 6 Polarization: -42.24 SS G_CDS: 4.40 Total: -37.83 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -0.32 Total: -102.97 kcal Atomic # 8 Polarization: -76.33 SS G_CDS: -4.01 Total: -80.34 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 1.88 Total: 42.56 kcal Atomic # 16 Polarization: 94.05 SS G_CDS: -0.31 Total: 93.74 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -76.71 2.63 -74.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069896514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.671 kcal (2) G-P(sol) polarization free energy of solvation -76.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds