Wall clock time and date at job start Tue Mar 31 2020 05:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99949 * 2 1 4 4 H 1.48502 * 109.46983 * 239.99505 * 3 2 1 5 5 H 1.48498 * 109.47348 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47406 * 120.00001 * 3 2 1 7 7 C 1.37879 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00112 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99915 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46754 * 180.02562 * 9 7 2 11 11 C 1.46502 * 119.99684 * 274.99593 * 10 9 7 12 12 C 1.53177 * 109.54187 * 59.56025 * 11 10 9 13 13 C 1.53095 * 109.16063 * 183.14848 * 12 11 10 14 14 O 1.42903 * 109.41401 * 57.61260 * 13 12 11 15 15 C 1.42908 * 114.09567 * 298.83901 * 14 13 12 16 16 C 1.53089 * 109.41645 * 61.15691 * 15 14 13 17 17 S 1.65600 * 120.00079 * 95.00192 * 10 9 7 18 18 O 1.42104 * 106.40239 * 336.45493 * 17 10 9 19 19 O 1.42103 * 106.40047 * 203.53462 * 17 10 9 20 20 C 1.76200 * 107.21758 * 89.99403 * 17 10 9 21 21 C 1.39370 * 119.50885 * 270.28756 * 20 17 10 22 22 C 1.36098 * 120.99091 * 180.28165 * 21 20 17 23 23 C 1.40536 * 119.65063 * 359.71066 * 22 21 20 24 24 C 1.40540 * 121.28217 * 180.02562 * 23 22 21 25 25 C 1.36091 * 119.65665 * 180.02562 * 24 23 22 26 26 C 1.39376 * 120.98533 * 359.95297 * 25 24 23 27 27 C 1.36089 * 120.99181 * 0.02562 * 26 25 24 28 28 C 1.40540 * 119.65387 * 0.02562 * 27 26 25 29 29 C 1.36095 * 119.50123 * 90.00021 * 20 17 10 30 30 H 0.97001 * 119.99408 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.46984 * 59.99695 * 9 7 2 32 32 H 1.09000 * 109.46865 * 299.99957 * 9 7 2 33 33 H 1.09006 * 109.53865 * 179.82877 * 11 10 9 34 34 H 1.08995 * 109.52168 * 303.05469 * 12 11 10 35 35 H 1.09001 * 109.51829 * 63.24652 * 12 11 10 36 36 H 1.08994 * 109.48428 * 297.62548 * 13 12 11 37 37 H 1.09004 * 109.47900 * 177.59047 * 13 12 11 38 38 H 1.08998 * 109.48016 * 301.17610 * 15 14 13 39 39 H 1.08997 * 109.48924 * 181.14480 * 15 14 13 40 40 H 1.08997 * 109.52737 * 182.48043 * 16 15 14 41 41 H 1.09005 * 109.52218 * 62.29840 * 16 15 14 42 42 H 1.07998 * 119.50525 * 359.97438 * 21 20 17 43 43 H 1.07997 * 120.17524 * 179.73800 * 22 21 20 44 44 H 1.08002 * 120.17303 * 0.02639 * 24 23 22 45 45 H 1.07998 * 119.50902 * 179.97438 * 25 24 23 46 46 H 1.08007 * 119.50474 * 180.02562 * 26 25 24 47 47 H 1.07997 * 120.17251 * 180.02562 * 27 26 25 48 48 H 1.08002 * 120.17715 * 0.02562 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 2.7640 -4.0981 -1.2615 12 6 3.5153 -2.9602 -1.9594 13 6 4.0304 -3.4544 -3.3137 14 8 2.9307 -3.9184 -4.0996 15 6 2.2194 -5.0134 -3.5188 16 6 1.6317 -4.5819 -2.1727 17 16 2.6450 -4.3226 1.4311 18 8 2.4192 -3.3546 2.4467 19 8 3.9095 -4.9298 1.2034 20 6 1.5099 -5.6358 1.7341 21 6 0.3416 -5.3817 2.4502 22 6 -0.5533 -6.3746 2.7065 23 6 -0.3013 -7.6755 2.2381 24 6 -1.2020 -8.7263 2.4825 25 6 -0.9247 -9.9735 2.0139 26 6 0.2408 -10.2264 1.2927 27 6 1.1356 -9.2336 1.0366 28 6 0.8841 -7.9327 1.5053 29 6 1.7844 -6.8817 1.2602 30 1 -0.4849 0.8401 -0.0004 31 1 0.6247 -2.5570 -0.8896 32 1 0.6240 -2.5567 0.8903 33 1 3.4497 -4.9220 -1.0633 34 1 2.8407 -2.1178 -2.1116 35 1 4.3571 -2.6470 -1.3418 36 1 4.7361 -4.2704 -3.1586 37 1 4.5290 -2.6363 -3.8336 38 1 2.9015 -5.8498 -3.3662 39 1 1.4135 -5.3185 -4.1862 40 1 1.1263 -5.4283 -1.7077 41 1 0.9190 -3.7722 -2.3292 42 1 0.1457 -4.3829 2.8115 43 1 -1.4524 -6.1639 3.2663 44 1 -2.1095 -8.5449 3.0393 45 1 -1.6183 -10.7793 2.2035 46 1 0.4368 -11.2253 0.9317 47 1 2.0344 -9.4442 0.4760 48 1 2.6917 -7.0629 0.7031 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069947095.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:08 Heat of formation + Delta-G solvation = -74.254510 kcal Electronic energy + Delta-G solvation = -33303.315145 eV Core-core repulsion = 29028.967141 eV Total energy + Delta-G solvation = -4274.348004 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.134 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.45559 -39.15200 -36.73598 -36.63317 -35.93524 -35.24854 -32.95487 -32.73662 -30.93756 -30.77081 -30.55241 -29.41235 -27.11866 -24.15641 -23.85585 -23.29029 -23.25578 -22.42271 -22.12838 -19.65155 -18.85621 -17.75410 -17.37060 -16.95914 -16.86580 -16.41721 -15.98600 -15.58236 -15.23092 -15.02709 -14.84839 -14.49845 -14.37053 -14.04418 -13.89233 -13.64876 -13.61344 -13.50417 -13.25823 -13.10863 -12.51757 -12.35411 -12.02349 -11.87037 -11.70921 -11.65489 -11.50077 -11.41149 -11.27367 -11.04991 -11.04629 -10.95149 -10.88487 -10.72291 -10.53835 -10.46270 -10.20693 -10.11093 -9.74379 -9.61215 -9.25848 -8.94340 -8.43365 -8.16609 -8.08598 -6.06667 -4.09336 0.20610 0.70228 0.95311 1.82738 2.66087 3.33884 3.37852 3.41642 3.55506 3.90601 4.14974 4.26424 4.37329 4.44593 4.61006 4.65417 4.80705 4.90237 4.98643 5.08379 5.14062 5.15714 5.20235 5.24233 5.30153 5.33424 5.47572 5.51818 5.56834 5.59012 5.70116 5.73494 5.76639 5.90481 5.93191 6.00595 6.04330 6.15677 6.16533 6.24281 6.36752 6.38543 6.41639 6.62210 6.64312 6.81211 7.06649 7.22091 7.35187 7.46296 7.56777 7.90169 8.18692 8.91199 9.54663 11.01921 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.010028 B = 0.003605 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.620783 B = 7766.195640 C = 9203.695812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.063 0.937 9 C 0.255 3.745 10 N -0.975 5.975 11 C 0.159 3.841 12 C -0.161 4.161 13 C 0.063 3.937 14 O -0.384 6.384 15 C 0.067 3.933 16 C -0.169 4.169 17 S 2.679 3.321 18 O -0.937 6.937 19 O -0.976 6.976 20 C -0.665 4.665 21 C -0.032 4.032 22 C -0.125 4.125 23 C -0.015 4.015 24 C -0.117 4.117 25 C -0.103 4.103 26 C -0.129 4.129 27 C -0.089 4.089 28 C -0.079 4.079 29 C 0.007 3.993 30 H 0.264 0.736 31 H 0.041 0.959 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.092 0.908 38 H 0.045 0.955 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.143 0.857 43 H 0.134 0.866 44 H 0.129 0.871 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.131 0.869 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.442 -18.943 -0.887 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.081 0.919 9 C 0.134 3.866 10 N -0.814 5.814 11 C 0.052 3.948 12 C -0.200 4.200 13 C -0.015 4.015 14 O -0.303 6.303 15 C -0.011 4.011 16 C -0.208 4.208 17 S 2.769 3.231 18 O -0.927 6.927 19 O -0.966 6.966 20 C -0.749 4.749 21 C -0.050 4.050 22 C -0.144 4.144 23 C -0.015 4.015 24 C -0.135 4.135 25 C -0.121 4.121 26 C -0.147 4.147 27 C -0.107 4.107 28 C -0.080 4.080 29 C -0.012 4.012 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.110 0.890 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.161 0.839 43 H 0.152 0.848 44 H 0.147 0.853 45 H 0.142 0.858 46 H 0.142 0.858 47 H 0.148 0.852 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.001 -18.508 -0.482 18.514 hybrid contribution -0.266 0.354 0.279 0.524 sum -0.267 -18.153 -0.202 18.157 Atomic orbital electron populations 1.69906 1.05959 1.27163 1.50303 1.24897 0.94836 0.99107 0.94976 0.86632 0.79652 0.82853 0.78789 1.20121 1.21286 1.20050 1.21430 0.93610 0.90319 1.51007 0.91918 1.19116 0.87036 0.81909 0.98557 1.57546 1.59790 1.45015 1.19008 1.20665 0.93912 0.96201 0.84035 1.22636 1.01872 1.00361 0.95170 1.22652 0.88103 0.98472 0.92251 1.87905 1.45268 1.50837 1.46242 1.22502 0.95554 0.88649 0.94379 1.22635 0.99797 1.02543 0.95848 1.02418 0.73721 0.73173 0.73830 1.93609 1.85517 1.57478 1.56125 1.93502 1.38416 1.78799 1.85903 1.31222 1.16076 1.16018 1.11545 1.20601 0.90885 1.00432 0.93127 1.21088 1.00215 0.91808 1.01294 1.18261 0.93563 0.94182 0.95534 1.21093 0.99186 0.92538 1.00683 1.20928 0.97063 0.96986 0.97113 1.20851 0.94702 0.99429 0.99739 1.21120 0.99462 0.91673 0.98485 1.18174 0.95293 0.94196 1.00311 1.20928 0.96859 0.90836 0.92577 0.92670 0.94136 0.94378 0.89948 0.87414 0.90759 0.93761 0.88955 0.93649 0.89164 0.91358 0.89219 0.83897 0.84802 0.85262 0.85821 0.85775 0.85153 0.84031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.22 13.29 55.43 0.74 -24.49 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -13.79 7.45 -34.44 -0.26 -14.05 16 8 H 0.06 1.64 7.18 -52.49 -0.38 1.26 16 9 C 0.26 6.00 4.66 -5.19 -0.02 5.98 16 10 N -0.97 -19.19 2.74 -108.38 -0.30 -19.48 16 11 C 0.16 2.69 2.60 -67.75 -0.18 2.52 16 12 C -0.16 -2.80 4.49 -26.59 -0.12 -2.92 16 13 C 0.06 0.90 6.84 37.21 0.25 1.16 16 14 O -0.38 -5.93 10.77 -35.23 -0.38 -6.31 16 15 C 0.07 0.87 6.84 37.20 0.25 1.13 16 16 C -0.17 -2.53 5.45 -26.59 -0.14 -2.68 16 17 S 2.68 52.07 5.62 -107.50 -0.60 51.46 16 18 O -0.94 -21.62 16.21 -57.17 -0.93 -22.55 16 19 O -0.98 -19.29 15.77 -57.17 -0.90 -20.19 16 20 C -0.66 -10.90 5.94 -39.93 -0.24 -11.14 16 21 C -0.03 -0.50 9.42 -39.93 -0.38 -0.87 16 22 C -0.13 -1.67 9.77 -39.48 -0.39 -2.06 16 23 C -0.02 -0.20 5.74 -106.84 -0.61 -0.81 16 24 C -0.12 -1.19 9.77 -39.49 -0.39 -1.57 16 25 C -0.10 -0.90 9.95 -39.93 -0.40 -1.30 16 26 C -0.13 -1.14 9.95 -39.93 -0.40 -1.54 16 27 C -0.09 -0.92 9.77 -39.49 -0.39 -1.31 16 28 C -0.08 -1.03 5.74 -106.83 -0.61 -1.64 16 29 C 0.01 0.10 9.22 -39.48 -0.36 -0.26 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.04 0.98 6.40 -51.93 -0.33 0.64 16 32 H 0.04 0.96 7.61 -51.93 -0.40 0.56 16 33 H 0.08 1.27 6.91 -51.93 -0.36 0.91 16 34 H 0.11 2.19 6.44 -51.93 -0.33 1.86 16 35 H 0.07 1.31 8.06 -51.93 -0.42 0.89 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.09 1.55 6.58 -51.93 -0.34 1.20 16 42 H 0.14 2.30 7.57 -52.49 -0.40 1.90 16 43 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 44 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 45 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 47 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 48 H 0.14 1.77 7.54 -52.49 -0.40 1.37 16 LS Contribution 397.91 15.07 6.00 6.00 Total: -1.00 -32.65 397.91 -12.58 -45.22 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.71 Total: 3.81 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: -4.46 Total: -29.72 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.44 Total: -43.97 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -2.21 Total: -49.05 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 52.07 SS G_CDS: -0.60 Total: 51.46 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.65 -12.58 -45.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069947095.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.033 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds