Wall clock time and date at job start Tue Mar 31 2020 05:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99949 * 2 1 4 4 H 1.48502 * 109.46983 * 239.99505 * 3 2 1 5 5 H 1.48498 * 109.47348 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47406 * 120.00001 * 3 2 1 7 7 C 1.37879 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00112 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99915 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46754 * 180.02562 * 9 7 2 11 11 C 1.46502 * 119.99684 * 274.99593 * 10 9 7 12 12 C 1.53177 * 109.54187 * 59.56025 * 11 10 9 13 13 C 1.53095 * 109.16063 * 183.14848 * 12 11 10 14 14 O 1.42903 * 109.41401 * 57.61260 * 13 12 11 15 15 C 1.42908 * 114.09567 * 298.83901 * 14 13 12 16 16 C 1.53089 * 109.41645 * 61.15691 * 15 14 13 17 17 S 1.65600 * 120.00079 * 95.00192 * 10 9 7 18 18 O 1.42104 * 106.40239 * 336.45493 * 17 10 9 19 19 O 1.42103 * 106.40047 * 203.53462 * 17 10 9 20 20 C 1.76200 * 107.21758 * 89.99403 * 17 10 9 21 21 C 1.39370 * 119.50885 * 270.28756 * 20 17 10 22 22 C 1.36098 * 120.99091 * 180.28165 * 21 20 17 23 23 C 1.40536 * 119.65063 * 359.71066 * 22 21 20 24 24 C 1.40540 * 121.28217 * 180.02562 * 23 22 21 25 25 C 1.36091 * 119.65665 * 180.02562 * 24 23 22 26 26 C 1.39376 * 120.98533 * 359.95297 * 25 24 23 27 27 C 1.36089 * 120.99181 * 0.02562 * 26 25 24 28 28 C 1.40540 * 119.65387 * 0.02562 * 27 26 25 29 29 C 1.36095 * 119.50123 * 90.00021 * 20 17 10 30 30 H 0.97001 * 119.99408 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.46984 * 59.99695 * 9 7 2 32 32 H 1.09000 * 109.46865 * 299.99957 * 9 7 2 33 33 H 1.09006 * 109.53865 * 179.82877 * 11 10 9 34 34 H 1.08995 * 109.52168 * 303.05469 * 12 11 10 35 35 H 1.09001 * 109.51829 * 63.24652 * 12 11 10 36 36 H 1.08994 * 109.48428 * 297.62548 * 13 12 11 37 37 H 1.09004 * 109.47900 * 177.59047 * 13 12 11 38 38 H 1.08998 * 109.48016 * 301.17610 * 15 14 13 39 39 H 1.08997 * 109.48924 * 181.14480 * 15 14 13 40 40 H 1.08997 * 109.52737 * 182.48043 * 16 15 14 41 41 H 1.09005 * 109.52218 * 62.29840 * 16 15 14 42 42 H 1.07998 * 119.50525 * 359.97438 * 21 20 17 43 43 H 1.07997 * 120.17524 * 179.73800 * 22 21 20 44 44 H 1.08002 * 120.17303 * 0.02639 * 24 23 22 45 45 H 1.07998 * 119.50902 * 179.97438 * 25 24 23 46 46 H 1.08007 * 119.50474 * 180.02562 * 26 25 24 47 47 H 1.07997 * 120.17251 * 180.02562 * 27 26 25 48 48 H 1.08002 * 120.17715 * 0.02562 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 2.7640 -4.0981 -1.2615 12 6 3.5153 -2.9602 -1.9594 13 6 4.0304 -3.4544 -3.3137 14 8 2.9307 -3.9184 -4.0996 15 6 2.2194 -5.0134 -3.5188 16 6 1.6317 -4.5819 -2.1727 17 16 2.6450 -4.3226 1.4311 18 8 2.4192 -3.3546 2.4467 19 8 3.9095 -4.9298 1.2034 20 6 1.5099 -5.6358 1.7341 21 6 0.3416 -5.3817 2.4502 22 6 -0.5533 -6.3746 2.7065 23 6 -0.3013 -7.6755 2.2381 24 6 -1.2020 -8.7263 2.4825 25 6 -0.9247 -9.9735 2.0139 26 6 0.2408 -10.2264 1.2927 27 6 1.1356 -9.2336 1.0366 28 6 0.8841 -7.9327 1.5053 29 6 1.7844 -6.8817 1.2602 30 1 -0.4849 0.8401 -0.0004 31 1 0.6247 -2.5570 -0.8896 32 1 0.6240 -2.5567 0.8903 33 1 3.4497 -4.9220 -1.0633 34 1 2.8407 -2.1178 -2.1116 35 1 4.3571 -2.6470 -1.3418 36 1 4.7361 -4.2704 -3.1586 37 1 4.5290 -2.6363 -3.8336 38 1 2.9015 -5.8498 -3.3662 39 1 1.4135 -5.3185 -4.1862 40 1 1.1263 -5.4283 -1.7077 41 1 0.9190 -3.7722 -2.3292 42 1 0.1457 -4.3829 2.8115 43 1 -1.4524 -6.1639 3.2663 44 1 -2.1095 -8.5449 3.0393 45 1 -1.6183 -10.7793 2.2035 46 1 0.4368 -11.2253 0.9317 47 1 2.0344 -9.4442 0.4760 48 1 2.6917 -7.0629 0.7031 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069947095.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:07 Heat of formation + Delta-G solvation = -94.553633 kcal Electronic energy + Delta-G solvation = -33304.195381 eV Core-core repulsion = 29028.967141 eV Total energy + Delta-G solvation = -4275.228240 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.134 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.36743 -40.40929 -38.35065 -37.57121 -37.42149 -36.89229 -34.70960 -33.87208 -32.45054 -31.96934 -31.50203 -30.32489 -29.01419 -25.57939 -24.90292 -24.52962 -24.30086 -24.03431 -23.01234 -20.97806 -20.18704 -19.17016 -18.65813 -18.31434 -18.29911 -17.77354 -17.36759 -16.79290 -16.53357 -16.37322 -16.10964 -15.74208 -15.59077 -15.27826 -15.05704 -14.90708 -14.77583 -14.54271 -14.44344 -14.34877 -14.18732 -13.69335 -13.32541 -13.28097 -13.14906 -13.07943 -13.02187 -12.83016 -12.67277 -12.55335 -12.48151 -12.43764 -12.25984 -12.09640 -11.91316 -11.85661 -11.68833 -11.42937 -11.14933 -11.05606 -10.55341 -10.45929 -9.90688 -9.75470 -9.03513 -8.16493 -6.24779 -0.79673 -0.54191 -0.22437 0.92666 1.39596 1.42421 1.48837 1.67429 2.12350 2.42600 2.75068 3.01038 3.05754 3.14897 3.25545 3.55066 3.74366 3.78890 3.86823 3.91797 4.05641 4.09262 4.13431 4.17983 4.22509 4.27252 4.35636 4.41142 4.42306 4.55815 4.67549 4.72985 4.79201 4.80466 4.85147 4.89929 4.99960 5.02186 5.13992 5.16101 5.20544 5.21961 5.33380 5.46131 5.48800 5.51106 5.61334 5.72034 5.78611 5.92454 5.96002 6.14327 6.34905 6.80762 7.41461 8.91353 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.010028 B = 0.003605 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.620783 B = 7766.195640 C = 9203.695812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.014 3.986 3 Si 0.948 3.052 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.531 4.531 8 H 0.057 0.943 9 C 0.275 3.725 10 N -0.979 5.979 11 C 0.149 3.851 12 C -0.162 4.162 13 C 0.068 3.932 14 O -0.401 6.401 15 C 0.066 3.934 16 C -0.162 4.162 17 S 2.685 3.315 18 O -0.988 6.988 19 O -0.984 6.984 20 C -0.675 4.675 21 C -0.068 4.068 22 C -0.118 4.118 23 C -0.032 4.032 24 C -0.128 4.128 25 C -0.092 4.092 26 C -0.119 4.119 27 C -0.099 4.099 28 C -0.095 4.095 29 C 0.011 3.989 30 H 0.265 0.735 31 H 0.031 0.969 32 H 0.014 0.986 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.122 0.878 43 H 0.157 0.843 44 H 0.151 0.849 45 H 0.159 0.841 46 H 0.159 0.841 47 H 0.153 0.847 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.471 -23.168 -1.984 23.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.185 4.185 3 Si 0.773 3.227 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.571 4.571 8 H 0.075 0.925 9 C 0.152 3.848 10 N -0.817 5.817 11 C 0.043 3.957 12 C -0.202 4.202 13 C -0.009 4.009 14 O -0.320 6.320 15 C -0.011 4.011 16 C -0.202 4.202 17 S 2.780 3.220 18 O -0.978 6.978 19 O -0.974 6.974 20 C -0.764 4.764 21 C -0.087 4.087 22 C -0.136 4.136 23 C -0.032 4.032 24 C -0.145 4.145 25 C -0.109 4.109 26 C -0.137 4.137 27 C -0.117 4.117 28 C -0.096 4.096 29 C -0.008 4.008 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.032 0.968 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.128 0.872 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.140 0.860 43 H 0.175 0.825 44 H 0.169 0.831 45 H 0.176 0.824 46 H 0.177 0.823 47 H 0.171 0.829 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.022 -22.699 -1.607 22.756 hybrid contribution -0.347 1.348 0.660 1.540 sum -0.325 -21.351 -0.947 21.374 Atomic orbital electron populations 1.70008 1.07130 1.27831 1.51539 1.25650 0.95656 1.02260 0.94981 0.85761 0.78652 0.79357 0.78899 1.18841 1.20582 1.20379 1.21740 0.93532 0.91748 1.50047 0.92481 1.18590 0.87060 0.82430 0.96731 1.57386 1.59218 1.44754 1.20328 1.20985 0.94977 0.96536 0.83168 1.22583 1.00806 0.99515 0.97271 1.22665 0.88230 0.99790 0.90214 1.87888 1.45707 1.51817 1.46559 1.22698 0.96582 0.88650 0.93149 1.22574 0.98568 1.01989 0.97023 1.01757 0.73965 0.73315 0.72935 1.93537 1.86371 1.60097 1.57821 1.93468 1.39396 1.78725 1.85860 1.30479 1.16028 1.15413 1.14518 1.20524 0.92220 1.00490 0.95446 1.21354 1.00068 0.91735 1.00461 1.18572 0.94403 0.94521 0.95706 1.21385 0.99528 0.92403 1.01230 1.21430 0.97285 0.97184 0.95026 1.21344 0.93762 1.00549 0.98025 1.21425 1.00945 0.90586 0.98754 1.18433 0.95167 0.95124 1.00896 1.21182 0.97594 0.90256 0.91787 0.92644 0.95152 0.96840 0.87863 0.91155 0.91742 0.91031 0.87949 0.90728 0.87159 0.89708 0.92332 0.85989 0.82545 0.83126 0.82356 0.82328 0.82889 0.82463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.59 13.29 21.45 0.28 -54.30 16 2 C 0.01 0.78 5.46 84.65 0.46 1.24 16 3 Si 0.95 45.03 29.54 68.60 2.03 47.06 16 4 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 7 C -0.53 -29.61 7.45 25.60 0.19 -29.42 16 8 H 0.06 3.16 7.18 -2.91 -0.02 3.14 16 9 C 0.27 13.93 4.66 85.63 0.40 14.33 16 10 N -0.98 -40.81 2.74 -496.79 -1.36 -42.17 16 11 C 0.15 5.14 2.60 45.11 0.12 5.26 16 12 C -0.16 -5.80 4.49 30.69 0.14 -5.66 16 13 C 0.07 1.89 6.84 72.01 0.49 2.38 16 14 O -0.40 -11.80 10.77 -148.98 -1.60 -13.40 16 15 C 0.07 1.59 6.84 72.01 0.49 2.08 16 16 C -0.16 -4.85 5.45 30.68 0.17 -4.68 16 17 S 2.69 110.59 5.62 -56.49 -0.32 110.27 16 18 O -0.99 -49.47 16.21 -128.00 -2.07 -51.55 16 19 O -0.98 -39.85 15.77 -128.00 -2.02 -41.87 16 20 C -0.68 -23.09 5.94 22.04 0.13 -22.96 16 21 C -0.07 -2.28 9.42 22.04 0.21 -2.07 16 22 C -0.12 -3.15 9.77 22.33 0.22 -2.94 16 23 C -0.03 -0.76 5.74 -21.30 -0.12 -0.88 16 24 C -0.13 -2.14 9.77 22.33 0.22 -1.92 16 25 C -0.09 -1.14 9.95 22.04 0.22 -0.92 16 26 C -0.12 -1.48 9.95 22.04 0.22 -1.26 16 27 C -0.10 -1.66 9.77 22.33 0.22 -1.44 16 28 C -0.10 -2.29 5.74 -21.29 -0.12 -2.41 16 29 C 0.01 0.31 9.22 22.33 0.21 0.52 16 30 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 31 H 0.03 1.59 6.40 -2.39 -0.02 1.57 16 32 H 0.01 0.75 7.61 -2.39 -0.02 0.73 16 33 H 0.10 3.11 6.91 -2.38 -0.02 3.09 16 34 H 0.07 3.03 6.44 -2.39 -0.02 3.02 16 35 H 0.06 2.36 8.06 -2.39 -0.02 2.34 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.06 2.12 6.58 -2.38 -0.02 2.10 16 42 H 0.12 4.46 7.57 -2.91 -0.02 4.44 16 43 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 44 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 45 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 46 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 47 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 48 H 0.16 3.70 7.54 -2.91 -0.02 3.68 16 Total: -1.00 -75.78 397.91 -0.24 -76.02 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.97 Total: 20.69 kcal Atomic # 6 Polarization: -54.61 SS G_CDS: 3.85 Total: -50.76 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -1.07 Total: -96.47 kcal Atomic # 8 Polarization: -101.12 SS G_CDS: -5.70 Total: -106.82 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: 110.59 SS G_CDS: -0.32 Total: 110.27 kcal Total: -75.78 -0.24 -76.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069947095.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.536 kcal (2) G-P(sol) polarization free energy of solvation -75.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds