Wall clock time and date at job start Tue Mar 31 2020 06:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99652 * 2 1 4 4 H 1.48503 * 109.47154 * 240.00033 * 3 2 1 5 5 H 1.48503 * 109.47243 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46857 * 120.00058 * 3 2 1 7 7 C 1.37877 * 120.00657 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00085 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99559 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47077 * 184.67023 * 9 7 2 11 11 C 1.46905 * 111.00125 * 284.39847 * 10 9 7 12 12 C 1.50693 * 109.46804 * 169.99638 * 11 10 9 13 13 N 1.30355 * 125.48158 * 90.00701 * 12 11 10 14 14 C 1.34140 * 108.90836 * 179.76373 * 13 12 11 15 15 C 1.35779 * 107.51166 * 0.36834 * 14 13 12 16 16 C 1.47829 * 126.58200 * 179.90096 * 15 14 13 17 17 C 1.39579 * 120.13150 * 359.68867 * 16 15 14 18 18 C 1.37938 * 119.86715 * 180.02562 * 17 16 15 19 19 C 1.38469 * 120.12886 * 359.97438 * 18 17 16 20 20 Cl 1.73609 * 119.86578 * 180.02562 * 19 18 17 21 21 C 1.38469 * 120.26941 * 0.28325 * 19 18 17 22 22 C 1.37941 * 120.12908 * 359.44149 * 21 19 18 23 23 O 1.34011 * 125.48564 * 269.99681 * 12 11 10 24 24 C 1.46901 * 111.00017 * 160.44496 * 10 9 7 25 25 C 1.53176 * 109.54496 * 52.61842 * 24 10 9 26 26 C 1.53092 * 109.16346 * 183.15437 * 25 24 10 27 27 O 1.42896 * 109.41643 * 57.60632 * 26 25 24 28 28 C 1.42899 * 114.10178 * 298.84520 * 27 26 25 29 29 C 1.53092 * 109.41618 * 61.15541 * 28 27 26 30 30 H 0.96995 * 120.00115 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47206 * 64.67125 * 9 7 2 32 32 H 1.09004 * 109.47114 * 304.67178 * 9 7 2 33 33 H 1.09002 * 109.46812 * 50.00000 * 11 10 9 34 34 H 1.08992 * 109.46726 * 290.00026 * 11 10 9 35 35 H 1.07999 * 126.24806 * 180.25272 * 14 13 12 36 36 H 1.08001 * 120.06917 * 359.97438 * 17 16 15 37 37 H 1.07998 * 119.93491 * 179.97438 * 18 17 16 38 38 H 1.07999 * 119.93450 * 179.70190 * 21 19 18 39 39 H 1.08001 * 120.06671 * 180.28001 * 22 21 19 40 40 H 1.08997 * 109.54195 * 172.88913 * 24 10 9 41 41 H 1.09000 * 109.52210 * 303.06261 * 25 24 10 42 42 H 1.08999 * 109.52061 * 63.24969 * 25 24 10 43 43 H 1.09005 * 109.47565 * 297.62641 * 26 25 24 44 44 H 1.09001 * 109.48150 * 177.59439 * 26 25 24 45 45 H 1.08997 * 109.47931 * 301.17474 * 28 27 26 46 46 H 1.09004 * 109.48444 * 181.14023 * 28 27 26 47 47 H 1.08999 * 109.52238 * 182.48640 * 29 28 27 48 48 H 1.08996 * 109.52418 * 62.29820 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2019 -3.6134 0.1116 11 6 2.8947 -3.8447 -1.1630 12 6 4.0254 -4.8180 -0.9507 13 7 3.9372 -6.1144 -1.0541 14 6 5.1395 -6.6534 -0.8024 15 6 5.9939 -5.6350 -0.5257 16 6 7.4278 -5.7554 -0.1869 17 6 8.0289 -7.0134 -0.1209 18 6 9.3671 -7.1194 0.1963 19 6 10.1140 -5.9810 0.4484 20 17 11.7980 -6.1223 0.8463 21 6 9.5220 -4.7306 0.3896 22 6 8.1859 -4.6116 0.0679 23 8 5.2834 -4.4901 -0.6253 24 6 1.5294 -4.8346 0.5745 25 6 0.3177 -5.1218 -0.3174 26 6 -0.4217 -6.3501 0.2194 27 8 -0.8096 -6.1163 1.5747 28 6 0.2854 -5.8887 2.4642 29 6 1.0532 -4.6418 2.0175 30 1 -0.4850 0.8400 -0.0004 31 1 0.6884 -2.5938 -0.9292 32 1 0.5636 -2.5217 0.8449 33 1 3.2928 -2.9012 -1.5366 34 1 2.1928 -4.2556 -1.8886 35 1 5.3830 -7.7055 -0.8153 36 1 7.4473 -7.9020 -0.3169 37 1 9.8333 -8.0922 0.2481 38 1 10.1085 -3.8466 0.5920 39 1 7.7263 -3.6355 0.0180 40 1 2.2243 -5.6731 0.5288 41 1 -0.3518 -4.2617 -0.3103 42 1 0.6530 -5.3150 -1.3364 43 1 0.2357 -7.2185 0.1741 44 1 -1.3091 -6.5338 -0.3862 45 1 0.9519 -6.7510 2.4482 46 1 -0.0926 -5.7399 3.4757 47 1 1.9145 -4.4918 2.6684 48 1 0.3985 -3.7720 2.0719 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069968658.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:05 Heat of formation + Delta-G solvation = 1.537788 kcal Electronic energy + Delta-G solvation = -31820.365949 eV Core-core repulsion = 27481.834928 eV Total energy + Delta-G solvation = -4338.531021 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.21173 -39.54956 -39.35391 -36.87184 -36.71909 -34.67563 -32.86741 -32.71918 -31.52131 -31.47997 -30.72458 -29.31960 -27.10146 -25.84525 -23.84608 -23.56829 -23.19254 -22.88873 -21.90359 -21.43344 -20.74869 -18.89599 -18.04028 -16.87733 -16.71360 -16.44742 -16.09704 -15.76312 -15.76001 -15.58160 -14.82466 -14.62228 -14.41409 -14.34738 -14.08016 -13.95880 -13.89003 -13.68049 -13.39519 -13.16728 -12.84095 -12.32734 -12.20431 -12.02801 -12.00214 -11.89460 -11.58777 -11.49688 -11.24283 -11.18458 -11.03037 -10.94845 -10.65124 -10.60677 -10.48728 -10.39588 -10.07800 -9.82752 -9.69935 -9.48419 -9.34201 -9.24155 -8.48368 -8.12182 -7.46759 -6.08938 -4.11423 0.28406 0.89488 1.74516 1.76247 2.60598 2.71910 3.29515 3.34498 3.36348 3.36975 4.08278 4.15041 4.32456 4.36377 4.46192 4.53763 4.71671 4.84646 4.86698 5.03582 5.17385 5.21229 5.22286 5.26811 5.34815 5.48351 5.52332 5.53915 5.61761 5.64281 5.75211 5.76227 5.81306 5.86697 5.94010 5.95786 5.99815 6.08115 6.19905 6.28120 6.31398 6.37590 6.38125 6.60789 6.71642 7.05814 7.19312 7.46368 7.68871 7.81364 7.92635 8.02433 8.38669 8.95079 9.53229 11.01016 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.007868 B = 0.002484 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3557.851530 B =11270.511901 C =13911.131226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.523 5.523 11 C 0.145 3.855 12 C 0.240 3.760 13 N -0.490 5.490 14 C -0.010 4.010 15 C -0.032 4.032 16 C 0.006 3.994 17 C -0.090 4.090 18 C -0.105 4.105 19 C -0.035 4.035 20 Cl -0.070 7.070 21 C -0.104 4.104 22 C -0.089 4.089 23 O -0.183 6.183 24 C 0.080 3.920 25 C -0.187 4.187 26 C 0.069 3.931 27 O -0.386 6.386 28 C 0.065 3.935 29 C -0.146 4.146 30 H 0.263 0.737 31 H -0.003 1.003 32 H 0.046 0.954 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.182 0.818 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.045 0.955 44 H 0.087 0.913 45 H 0.043 0.957 46 H 0.090 0.910 47 H 0.073 0.927 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.836 -15.741 -0.183 21.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.070 3.930 10 N -0.248 5.248 11 C 0.016 3.984 12 C 0.035 3.965 13 N -0.219 5.219 14 C -0.151 4.151 15 C -0.086 4.086 16 C 0.005 3.995 17 C -0.108 4.108 18 C -0.124 4.124 19 C -0.061 4.061 20 Cl -0.041 7.041 21 C -0.122 4.122 22 C -0.108 4.108 23 O -0.069 6.069 24 C -0.029 4.029 25 C -0.227 4.227 26 C -0.008 4.008 27 O -0.305 6.305 28 C -0.012 4.012 29 C -0.184 4.184 30 H 0.073 0.927 31 H 0.015 0.985 32 H 0.064 0.936 33 H 0.131 0.869 34 H 0.091 0.909 35 H 0.199 0.801 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.159 0.841 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.105 0.895 45 H 0.061 0.939 46 H 0.108 0.892 47 H 0.092 0.908 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.438 -15.713 0.112 21.339 hybrid contribution 0.980 1.057 -0.468 1.515 sum 15.418 -14.656 -0.356 21.275 Atomic orbital electron populations 1.69932 1.06001 1.27055 1.50441 1.24955 0.94834 0.99230 0.95274 0.86586 0.79482 0.82815 0.78685 1.20251 1.21349 1.20172 1.21116 0.93497 0.89862 1.50733 0.91943 1.19846 0.90036 0.86328 0.96809 1.62341 1.31754 1.05438 1.25240 1.20556 0.88572 0.95588 0.93727 1.26807 0.83371 0.91634 0.94736 1.70441 1.24229 1.06563 1.20655 1.23290 0.88342 1.00213 1.03231 1.21196 0.93037 0.84391 1.09944 1.17701 0.87487 0.94103 1.00228 1.20977 0.94163 0.96314 0.99387 1.20913 0.93407 0.97920 1.00114 1.21054 0.85855 0.95185 1.04040 1.98379 1.15084 1.98357 1.92320 1.21018 0.94927 0.96382 0.99916 1.21334 0.93057 0.98956 0.97434 1.84510 1.21969 1.33974 1.66407 1.21781 0.93472 0.93514 0.94127 1.22861 0.99598 0.99926 1.00272 1.22459 0.99217 0.96195 0.82928 1.87886 1.32313 1.91941 1.18327 1.22559 0.88814 0.96356 0.93477 1.22247 1.00802 0.99057 0.96321 0.92741 0.98538 0.93582 0.86927 0.90855 0.80055 0.84365 0.84279 0.84342 0.84105 0.90469 0.89859 0.91280 0.93645 0.89472 0.93879 0.89161 0.90798 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.47 13.29 55.43 0.74 -24.73 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.51 -13.55 8.61 -34.44 -0.30 -13.84 16 8 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 9 C 0.19 4.62 3.31 -4.97 -0.02 4.60 16 10 N -0.52 -10.46 4.36 -229.30 -1.00 -11.46 16 11 C 0.14 2.59 5.31 -4.98 -0.03 2.57 16 12 C 0.24 4.03 7.00 -12.91 -0.09 3.94 16 13 N -0.49 -7.68 10.23 -10.82 -0.11 -7.79 16 14 C -0.01 -0.13 11.29 -17.42 -0.20 -0.33 16 15 C -0.03 -0.44 7.07 -36.54 -0.26 -0.70 16 16 C 0.01 0.06 5.87 -104.98 -0.62 -0.55 16 17 C -0.09 -0.77 9.57 -39.19 -0.38 -1.15 16 18 C -0.10 -0.83 9.81 -39.61 -0.39 -1.22 16 19 C -0.03 -0.31 6.32 -39.41 -0.25 -0.56 16 20 Cl -0.07 -0.58 28.95 -51.86 -1.50 -2.08 16 21 C -0.10 -0.96 9.81 -39.61 -0.39 -1.35 16 22 C -0.09 -0.96 9.73 -39.19 -0.38 -1.34 16 23 O -0.18 -3.00 10.59 4.21 0.04 -2.96 16 24 C 0.08 1.41 2.15 -67.53 -0.15 1.26 16 25 C -0.19 -3.12 4.76 -26.59 -0.13 -3.24 16 26 C 0.07 1.02 6.84 37.21 0.25 1.27 16 27 O -0.39 -6.29 10.76 -35.23 -0.38 -6.67 16 28 C 0.07 0.96 6.84 37.20 0.25 1.21 16 29 C -0.15 -2.50 5.46 -26.59 -0.15 -2.65 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.00 -0.08 7.26 -51.93 -0.38 -0.46 16 32 H 0.05 1.20 5.86 -51.93 -0.30 0.89 16 33 H 0.11 2.10 7.31 -51.93 -0.38 1.72 16 34 H 0.07 1.25 6.54 -51.93 -0.34 0.91 16 35 H 0.18 1.66 7.30 -52.49 -0.38 1.28 16 36 H 0.14 0.86 7.04 -52.49 -0.37 0.49 16 37 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.14 1.54 7.94 -52.49 -0.42 1.13 16 40 H 0.08 1.35 6.22 -51.93 -0.32 1.03 16 41 H 0.08 1.59 6.57 -51.93 -0.34 1.25 16 42 H 0.07 1.10 6.77 -51.93 -0.35 0.75 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 48 H 0.08 1.65 6.20 -51.93 -0.32 1.32 16 LS Contribution 402.06 15.07 6.06 6.06 Total: -1.00 -29.69 402.06 -10.87 -40.56 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.40 Total: 3.75 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -3.29 Total: -10.58 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: -0.37 Total: -43.98 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.33 Total: -9.63 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.69 -10.87 -40.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069968658.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.097 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds