Wall clock time and date at job start Tue Mar 31 2020 06:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99652 * 2 1 4 4 H 1.48503 * 109.47154 * 240.00033 * 3 2 1 5 5 H 1.48503 * 109.47243 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46857 * 120.00058 * 3 2 1 7 7 C 1.37877 * 120.00657 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00085 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99559 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47077 * 184.67023 * 9 7 2 11 11 C 1.46905 * 111.00125 * 284.39847 * 10 9 7 12 12 C 1.50693 * 109.46804 * 169.99638 * 11 10 9 13 13 N 1.30355 * 125.48158 * 90.00701 * 12 11 10 14 14 C 1.34140 * 108.90836 * 179.76373 * 13 12 11 15 15 C 1.35779 * 107.51166 * 0.36834 * 14 13 12 16 16 C 1.47829 * 126.58200 * 179.90096 * 15 14 13 17 17 C 1.39579 * 120.13150 * 359.68867 * 16 15 14 18 18 C 1.37938 * 119.86715 * 180.02562 * 17 16 15 19 19 C 1.38469 * 120.12886 * 359.97438 * 18 17 16 20 20 Cl 1.73609 * 119.86578 * 180.02562 * 19 18 17 21 21 C 1.38469 * 120.26941 * 0.28325 * 19 18 17 22 22 C 1.37941 * 120.12908 * 359.44149 * 21 19 18 23 23 O 1.34011 * 125.48564 * 269.99681 * 12 11 10 24 24 C 1.46901 * 111.00017 * 160.44496 * 10 9 7 25 25 C 1.53176 * 109.54496 * 52.61842 * 24 10 9 26 26 C 1.53092 * 109.16346 * 183.15437 * 25 24 10 27 27 O 1.42896 * 109.41643 * 57.60632 * 26 25 24 28 28 C 1.42899 * 114.10178 * 298.84520 * 27 26 25 29 29 C 1.53092 * 109.41618 * 61.15541 * 28 27 26 30 30 H 0.96995 * 120.00115 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47206 * 64.67125 * 9 7 2 32 32 H 1.09004 * 109.47114 * 304.67178 * 9 7 2 33 33 H 1.09002 * 109.46812 * 50.00000 * 11 10 9 34 34 H 1.08992 * 109.46726 * 290.00026 * 11 10 9 35 35 H 1.07999 * 126.24806 * 180.25272 * 14 13 12 36 36 H 1.08001 * 120.06917 * 359.97438 * 17 16 15 37 37 H 1.07998 * 119.93491 * 179.97438 * 18 17 16 38 38 H 1.07999 * 119.93450 * 179.70190 * 21 19 18 39 39 H 1.08001 * 120.06671 * 180.28001 * 22 21 19 40 40 H 1.08997 * 109.54195 * 172.88913 * 24 10 9 41 41 H 1.09000 * 109.52210 * 303.06261 * 25 24 10 42 42 H 1.08999 * 109.52061 * 63.24969 * 25 24 10 43 43 H 1.09005 * 109.47565 * 297.62641 * 26 25 24 44 44 H 1.09001 * 109.48150 * 177.59439 * 26 25 24 45 45 H 1.08997 * 109.47931 * 301.17474 * 28 27 26 46 46 H 1.09004 * 109.48444 * 181.14023 * 28 27 26 47 47 H 1.08999 * 109.52238 * 182.48640 * 29 28 27 48 48 H 1.08996 * 109.52418 * 62.29820 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2019 -3.6134 0.1116 11 6 2.8947 -3.8447 -1.1630 12 6 4.0254 -4.8180 -0.9507 13 7 3.9372 -6.1144 -1.0541 14 6 5.1395 -6.6534 -0.8024 15 6 5.9939 -5.6350 -0.5257 16 6 7.4278 -5.7554 -0.1869 17 6 8.0289 -7.0134 -0.1209 18 6 9.3671 -7.1194 0.1963 19 6 10.1140 -5.9810 0.4484 20 17 11.7980 -6.1223 0.8463 21 6 9.5220 -4.7306 0.3896 22 6 8.1859 -4.6116 0.0679 23 8 5.2834 -4.4901 -0.6253 24 6 1.5294 -4.8346 0.5745 25 6 0.3177 -5.1218 -0.3174 26 6 -0.4217 -6.3501 0.2194 27 8 -0.8096 -6.1163 1.5747 28 6 0.2854 -5.8887 2.4642 29 6 1.0532 -4.6418 2.0175 30 1 -0.4850 0.8400 -0.0004 31 1 0.6884 -2.5938 -0.9292 32 1 0.5636 -2.5217 0.8449 33 1 3.2928 -2.9012 -1.5366 34 1 2.1928 -4.2556 -1.8886 35 1 5.3830 -7.7055 -0.8153 36 1 7.4473 -7.9020 -0.3169 37 1 9.8333 -8.0922 0.2481 38 1 10.1085 -3.8466 0.5920 39 1 7.7263 -3.6355 0.0180 40 1 2.2243 -5.6731 0.5288 41 1 -0.3518 -4.2617 -0.3103 42 1 0.6530 -5.3150 -1.3364 43 1 0.2357 -7.2185 0.1741 44 1 -1.3091 -6.5338 -0.3862 45 1 0.9519 -6.7510 2.4482 46 1 -0.0926 -5.7399 3.4757 47 1 1.9145 -4.4918 2.6684 48 1 0.3985 -3.7720 2.0719 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069968658.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:04 Heat of formation + Delta-G solvation = -16.833436 kcal Electronic energy + Delta-G solvation = -31821.162585 eV Core-core repulsion = 27481.834928 eV Total energy + Delta-G solvation = -4339.327657 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.134 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.36380 -40.77260 -40.23064 -38.20768 -37.51452 -35.85440 -34.82899 -33.78110 -32.80067 -32.20556 -32.01097 -30.69693 -28.69228 -27.19852 -25.17984 -24.65701 -24.49309 -24.01196 -23.18837 -22.48993 -21.91139 -20.38743 -18.94198 -18.59354 -17.85705 -17.68275 -17.31241 -17.00337 -16.78949 -16.62248 -16.46443 -16.01265 -15.73264 -15.54339 -15.30995 -15.11837 -14.61816 -14.58737 -14.56434 -14.34662 -14.27770 -14.12781 -13.41083 -13.25005 -13.05597 -12.93039 -12.86476 -12.74600 -12.68263 -12.59324 -12.49107 -12.24716 -12.08537 -11.87751 -11.85754 -11.75467 -11.64492 -11.37202 -11.11335 -10.67505 -10.57495 -10.53317 -10.17226 -9.16598 -9.00479 -8.18577 -6.28369 -0.57431 0.20569 0.72646 1.05951 1.41282 1.43138 1.50193 1.51562 1.62820 2.40170 2.60127 2.88168 2.97437 3.13699 3.26194 3.46779 3.73020 3.81541 3.82523 3.88104 3.95791 4.04792 4.14089 4.15499 4.26844 4.30667 4.36326 4.37078 4.51525 4.53635 4.60042 4.63297 4.73470 4.76259 4.79280 4.89141 4.89795 5.02699 5.09325 5.11301 5.12918 5.19475 5.22471 5.27781 5.35879 5.39401 5.60630 5.65003 6.04724 6.22210 6.26668 6.49564 6.67135 6.85516 7.40668 8.90953 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.007868 B = 0.002484 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3557.851530 B =11270.511901 C =13911.131226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.217 3.783 10 N -0.533 5.533 11 C 0.151 3.849 12 C 0.213 3.787 13 N -0.489 5.489 14 C -0.014 4.014 15 C -0.028 4.028 16 C -0.019 4.019 17 C -0.077 4.077 18 C -0.101 4.101 19 C -0.036 4.036 20 Cl -0.064 7.064 21 C -0.109 4.109 22 C -0.103 4.103 23 O -0.203 6.203 24 C 0.083 3.917 25 C -0.181 4.181 26 C 0.072 3.928 27 O -0.402 6.402 28 C 0.069 3.931 29 C -0.144 4.144 30 H 0.264 0.736 31 H -0.025 1.025 32 H 0.020 0.980 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.224 0.776 36 H 0.168 0.832 37 H 0.168 0.832 38 H 0.149 0.851 39 H 0.127 0.873 40 H 0.087 0.913 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.104 0.896 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.073 0.927 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.103 -18.416 0.066 25.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.077 0.923 9 C 0.091 3.909 10 N -0.257 5.257 11 C 0.023 3.977 12 C 0.008 3.992 13 N -0.219 5.219 14 C -0.154 4.154 15 C -0.081 4.081 16 C -0.019 4.019 17 C -0.095 4.095 18 C -0.119 4.119 19 C -0.063 4.063 20 Cl -0.035 7.035 21 C -0.127 4.127 22 C -0.122 4.122 23 O -0.090 6.090 24 C -0.025 4.025 25 C -0.220 4.220 26 C -0.005 4.005 27 O -0.321 6.321 28 C -0.007 4.007 29 C -0.182 4.182 30 H 0.073 0.927 31 H -0.007 1.007 32 H 0.038 0.962 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.240 0.760 36 H 0.186 0.814 37 H 0.185 0.815 38 H 0.167 0.833 39 H 0.145 0.855 40 H 0.105 0.895 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.122 0.878 45 H 0.084 0.916 46 H 0.126 0.874 47 H 0.092 0.908 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 16.727 -18.399 0.360 24.869 hybrid contribution 0.466 1.801 -0.527 1.933 sum 17.193 -16.598 -0.167 23.898 Atomic orbital electron populations 1.70058 1.07489 1.27868 1.51543 1.25777 0.95614 1.02713 0.94906 0.85569 0.78276 0.78583 0.78991 1.19241 1.20960 1.19729 1.21441 0.93507 0.91220 1.50208 0.92284 1.19365 0.89808 0.87255 0.94434 1.62199 1.31063 1.05754 1.26679 1.20306 0.89152 0.95516 0.92775 1.26247 0.83366 0.91824 0.97724 1.70393 1.25663 1.05840 1.20027 1.23900 0.86975 1.01814 1.02703 1.21792 0.94031 0.83665 1.08567 1.17858 0.86396 0.95430 1.02265 1.21292 0.94508 0.96078 0.97646 1.21257 0.93075 0.98786 0.98759 1.21243 0.86301 0.95391 1.03371 1.98387 1.14545 1.98318 1.92202 1.21117 0.94416 0.97337 0.99865 1.21323 0.93858 0.98627 0.98366 1.84477 1.22141 1.35688 1.66657 1.21813 0.93800 0.92474 0.94442 1.22764 0.98716 0.99856 1.00643 1.22556 1.00146 0.95404 0.82412 1.87872 1.33258 1.91902 1.19063 1.22636 0.88652 0.95545 0.93907 1.22221 1.00414 0.99313 0.96292 0.92716 1.00731 0.96235 0.88640 0.90304 0.75980 0.81414 0.81483 0.83309 0.85468 0.89503 0.93246 0.90672 0.91552 0.87776 0.91583 0.87413 0.90838 0.93247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 2 C 0.01 0.48 5.46 84.65 0.46 0.94 16 3 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.53 -28.96 8.61 25.60 0.22 -28.74 16 8 H 0.06 3.22 7.65 -2.91 -0.02 3.20 16 9 C 0.22 10.99 3.31 85.56 0.28 11.28 16 10 N -0.53 -22.34 4.36 -879.36 -3.84 -26.17 16 11 C 0.15 5.69 5.31 85.55 0.45 6.14 16 12 C 0.21 7.25 7.00 88.33 0.62 7.87 16 13 N -0.49 -14.73 10.23 -302.85 -3.10 -17.82 16 14 C -0.01 -0.32 11.29 83.77 0.95 0.62 16 15 C -0.03 -0.72 7.07 24.24 0.17 -0.55 16 16 C -0.02 -0.39 5.87 -20.09 -0.12 -0.51 16 17 C -0.08 -1.06 9.57 22.52 0.22 -0.84 16 18 C -0.10 -1.24 9.81 22.25 0.22 -1.02 16 19 C -0.04 -0.56 6.32 22.38 0.14 -0.42 16 20 Cl -0.06 -0.91 28.95 -2.72 -0.08 -0.98 16 21 C -0.11 -1.89 9.81 22.25 0.22 -1.67 16 22 C -0.10 -2.18 9.73 22.52 0.22 -1.96 16 23 O -0.20 -6.81 10.59 -7.86 -0.08 -6.89 16 24 C 0.08 2.99 2.15 45.03 0.10 3.08 16 25 C -0.18 -6.13 4.76 30.68 0.15 -5.99 16 26 C 0.07 2.02 6.84 72.01 0.49 2.51 16 27 O -0.40 -12.69 10.76 -148.98 -1.60 -14.29 16 28 C 0.07 1.95 6.84 72.01 0.49 2.45 16 29 C -0.14 -5.06 5.46 30.69 0.17 -4.89 16 30 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 31 H -0.03 -1.35 7.26 -2.39 -0.02 -1.37 16 32 H 0.02 1.10 5.86 -2.39 -0.01 1.08 16 33 H 0.10 3.83 7.31 -2.39 -0.02 3.81 16 34 H 0.08 2.81 6.54 -2.39 -0.02 2.79 16 35 H 0.22 3.08 7.30 -2.91 -0.02 3.06 16 36 H 0.17 1.24 7.04 -2.91 -0.02 1.22 16 37 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 38 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 39 H 0.13 2.94 7.94 -2.91 -0.02 2.91 16 40 H 0.09 2.98 6.22 -2.39 -0.01 2.96 16 41 H 0.05 2.01 6.57 -2.39 -0.02 1.99 16 42 H 0.07 2.42 6.77 -2.39 -0.02 2.40 16 43 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 46 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 47 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 48 H 0.05 2.07 6.20 -2.39 -0.01 2.05 16 Total: -1.00 -66.89 402.06 0.05 -66.84 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.99 Total: 19.74 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 5.45 Total: -11.70 kcal Atomic # 7 Polarization: -91.93 SS G_CDS: -6.65 Total: -98.58 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -1.69 Total: -21.18 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.98 kcal Total: -66.89 0.05 -66.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069968658.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.008 kcal (2) G-P(sol) polarization free energy of solvation -66.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds