Wall clock time and date at job start Tue Mar 31 2020 06:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34741 * 117.00051 * 2 1 4 4 O 1.21508 * 119.99962 * 359.97438 * 3 2 1 5 5 C 1.47462 * 120.00275 * 180.02562 * 3 2 1 6 6 C 1.39807 * 120.08092 * 179.97438 * 5 3 2 7 7 C 1.37648 * 119.91788 * 180.02562 * 6 5 3 8 8 C 1.39148 * 120.08109 * 359.97438 * 7 6 5 9 9 N 1.39417 * 119.91913 * 179.97438 * 8 7 6 10 10 C 1.34774 * 119.99749 * 144.11920 * 9 8 7 11 11 O 1.21281 * 119.99855 * 3.96103 * 10 9 8 12 12 C 1.50698 * 119.99968 * 183.95100 * 10 9 8 13 13 N 1.46908 * 109.46979 * 185.09057 * 12 10 9 14 14 C 1.46903 * 110.99820 * 200.08517 * 13 12 10 15 15 C 1.50698 * 109.46900 * 151.76205 * 14 13 12 16 16 H 1.07997 * 119.99780 * 2.39828 * 15 14 13 17 17 C 1.37874 * 119.99873 * 182.40171 * 15 14 13 18 18 N 1.31512 * 120.00067 * 180.02562 * 17 15 14 19 19 Si 1.86809 * 119.99944 * 359.97438 * 17 15 14 20 20 H 1.48490 * 109.47108 * 90.00339 * 19 17 15 21 21 H 1.48501 * 109.46957 * 210.00420 * 19 17 15 22 22 H 1.48499 * 109.46884 * 330.00038 * 19 17 15 23 23 C 1.46899 * 110.99770 * 76.13401 * 13 12 10 24 24 C 1.53167 * 109.54643 * 73.86902 * 23 13 12 25 25 C 1.53089 * 109.16722 * 176.84550 * 24 23 13 26 26 O 1.42910 * 109.41339 * 302.39369 * 25 24 23 27 27 C 1.42901 * 114.09784 * 61.15476 * 26 25 24 28 28 C 1.53093 * 109.41342 * 298.84215 * 27 26 25 29 29 C 1.39145 * 120.15789 * 0.27481 * 8 7 6 30 30 C 1.37646 * 120.07726 * 359.45218 * 29 8 7 31 31 H 1.08997 * 109.47162 * 59.99972 * 1 2 3 32 32 H 1.09006 * 109.47164 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46824 * 299.99628 * 1 2 3 34 34 H 1.07997 * 120.04121 * 0.02562 * 6 5 3 35 35 H 1.08003 * 119.95873 * 179.97438 * 7 6 5 36 36 H 0.96997 * 120.00292 * 324.12189 * 9 8 7 37 37 H 1.08997 * 109.46727 * 65.09673 * 12 10 9 38 38 H 1.08997 * 109.47424 * 305.08785 * 12 10 9 39 39 H 1.08996 * 109.47092 * 271.76367 * 14 13 12 40 40 H 1.09007 * 109.47087 * 31.76048 * 14 13 12 41 41 H 0.97003 * 120.00019 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.61571 * 313.64483 * 23 13 12 43 43 H 1.09002 * 109.52279 * 296.75016 * 24 23 13 44 44 H 1.09006 * 109.52438 * 56.94013 * 24 23 13 45 45 H 1.09000 * 109.48906 * 182.41189 * 25 24 23 46 46 H 1.09004 * 109.48162 * 62.36716 * 25 24 23 47 47 H 1.08999 * 109.48046 * 178.86180 * 27 26 25 48 48 H 1.09001 * 109.49110 * 58.83520 * 27 26 25 49 49 H 1.09000 * 109.52190 * 297.70163 * 28 27 26 50 50 H 1.08998 * 109.52107 * 177.51786 * 28 27 26 51 51 H 1.07997 * 119.96102 * 179.69994 * 29 8 7 52 52 H 1.08001 * 120.03819 * 180.25105 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2005 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5364 1.2778 -0.0006 6 6 4.1728 2.5226 -0.0011 7 6 5.5476 2.5908 -0.0022 8 6 6.3038 1.4227 -0.0022 9 7 7.6960 1.4957 -0.0038 10 6 8.4192 0.5871 0.6801 11 8 7.8631 -0.3354 1.2375 12 6 9.9188 0.7172 0.7522 13 7 10.4791 -0.4513 1.4442 14 6 11.8264 -0.1648 1.9548 15 6 12.0925 -1.0114 3.1727 16 1 11.3518 -1.7218 3.5088 17 6 13.2815 -0.8789 3.8580 18 7 13.5139 -1.6180 4.9206 19 14 14.5629 0.3497 3.2763 20 1 14.3257 1.6605 3.9324 21 1 15.9181 -0.1433 3.6308 22 1 14.4636 0.5083 1.8031 23 6 10.4884 -1.6288 0.5658 24 6 11.5959 -1.4781 -0.4815 25 6 11.6496 -2.7433 -1.3417 26 8 11.8697 -3.8791 -0.5029 27 6 10.8416 -4.0975 0.4653 28 6 10.7555 -2.8867 1.3981 29 6 5.6738 0.1821 -0.0069 30 6 4.2994 0.1063 -0.0001 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 3.5865 3.4296 -0.0007 35 1 6.0399 3.5521 -0.0030 36 1 8.1442 2.2004 -0.4971 37 1 10.1790 1.6230 1.2999 38 1 10.3277 0.7725 -0.2567 39 1 12.5631 -0.3941 1.1849 40 1 11.8969 0.8895 2.2226 41 1 14.3506 -1.5250 5.4026 42 1 9.5240 -1.7201 0.0661 43 1 11.3841 -0.6162 -1.1142 44 1 12.5539 -1.3371 0.0191 45 1 12.4641 -2.6595 -2.0612 46 1 10.7054 -2.8618 -1.8734 47 1 11.0740 -4.9891 1.0475 48 1 9.8868 -4.2338 -0.0426 49 1 11.6964 -2.7741 1.9366 50 1 9.9427 -3.0321 2.1096 51 1 6.2638 -0.7224 -0.0118 52 1 3.8111 -0.8570 0.0003 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070018720.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:14 Heat of formation + Delta-G solvation = -133.618856 kcal Electronic energy + Delta-G solvation = -34760.906860 eV Core-core repulsion = 30111.638937 eV Total energy + Delta-G solvation = -4649.267923 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 376.188 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.89191 -41.40077 -40.59956 -39.32262 -37.83905 -37.49078 -35.85738 -34.61448 -32.95093 -32.14927 -31.95560 -31.63136 -30.32589 -28.61325 -27.41734 -25.35122 -24.70426 -24.43370 -23.95349 -22.94185 -22.10241 -21.35087 -20.35319 -19.13488 -19.07327 -18.66832 -18.12990 -17.91259 -17.47352 -17.40095 -16.83606 -16.55972 -16.41107 -16.22455 -15.71624 -15.64966 -15.60787 -15.21108 -15.15904 -14.83714 -14.55489 -14.48577 -14.47906 -14.36685 -14.07315 -13.66648 -13.65047 -13.29252 -13.23929 -13.01165 -12.83065 -12.77553 -12.46935 -12.37451 -12.12537 -12.03639 -11.88933 -11.83980 -11.72576 -11.62311 -11.43081 -11.33779 -10.98518 -10.80317 -10.64775 -10.40621 -10.06659 -9.32788 -8.86970 -8.17037 -6.15965 -0.45748 0.33760 1.28149 1.37826 1.40255 1.49151 1.66380 1.68783 1.91980 2.40741 2.73774 3.00409 3.13234 3.21349 3.66272 3.68766 3.86575 3.90373 3.91388 3.97993 4.11968 4.23178 4.28689 4.30209 4.31163 4.32547 4.34921 4.36576 4.42295 4.51424 4.54088 4.67441 4.68874 4.73800 4.80203 4.82803 4.94334 5.01981 5.03013 5.09460 5.19193 5.21012 5.24278 5.26907 5.38905 5.44797 5.64601 5.69756 5.84480 6.03002 6.30819 6.33239 6.47937 6.62869 6.71746 6.89935 7.16847 7.42963 8.99406 Molecular weight = 376.19amu Principal moments of inertia in cm(-1) A = 0.012044 B = 0.002045 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.325485 B =13690.886712 C =14650.259040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.513 3.487 4 O -0.537 6.537 5 C -0.167 4.167 6 C -0.034 4.034 7 C -0.149 4.149 8 C 0.186 3.814 9 N -0.662 5.662 10 C 0.516 3.484 11 O -0.531 6.531 12 C 0.032 3.968 13 N -0.529 5.529 14 C 0.162 3.838 15 C -0.494 4.494 16 H 0.040 0.960 17 C 0.000 4.000 18 N -0.954 5.954 19 Si 0.941 3.059 20 H -0.268 1.268 21 H -0.293 1.293 22 H -0.241 1.241 23 C 0.108 3.892 24 C -0.192 4.192 25 C 0.066 3.934 26 O -0.404 6.404 27 C 0.070 3.930 28 C -0.148 4.148 29 C -0.153 4.153 30 C -0.039 4.039 31 H 0.066 0.934 32 H 0.132 0.868 33 H 0.062 0.938 34 H 0.151 0.849 35 H 0.169 0.831 36 H 0.432 0.568 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.021 0.979 40 H 0.030 0.970 41 H 0.262 0.738 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.065 0.935 45 H 0.108 0.892 46 H 0.064 0.936 47 H 0.090 0.910 48 H 0.062 0.938 49 H 0.071 0.929 50 H 0.047 0.953 51 H 0.130 0.870 52 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.381 8.279 -19.179 27.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.361 3.639 4 O -0.429 6.429 5 C -0.169 4.169 6 C -0.053 4.053 7 C -0.169 4.169 8 C 0.090 3.910 9 N -0.310 5.310 10 C 0.304 3.696 11 O -0.405 6.405 12 C -0.099 4.099 13 N -0.252 5.252 14 C 0.036 3.964 15 C -0.532 4.532 16 H 0.058 0.942 17 C -0.196 4.196 18 N -0.595 5.595 19 Si 0.765 3.235 20 H -0.193 1.193 21 H -0.219 1.219 22 H -0.164 1.164 23 C -0.001 4.001 24 C -0.231 4.231 25 C -0.011 4.011 26 O -0.323 6.323 27 C -0.007 4.007 28 C -0.186 4.186 29 C -0.173 4.173 30 C -0.058 4.058 31 H 0.085 0.915 32 H 0.150 0.850 33 H 0.081 0.919 34 H 0.168 0.832 35 H 0.187 0.813 36 H 0.272 0.728 37 H 0.137 0.863 38 H 0.115 0.885 39 H 0.038 0.962 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.083 0.917 45 H 0.126 0.874 46 H 0.082 0.918 47 H 0.109 0.891 48 H 0.080 0.920 49 H 0.089 0.911 50 H 0.066 0.934 51 H 0.148 0.852 52 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.938 7.634 -18.229 26.690 hybrid contribution 0.884 0.796 0.037 1.190 sum -17.054 8.430 -18.192 26.322 Atomic orbital electron populations 1.23588 0.74239 1.05853 1.02720 1.86556 1.25340 1.31965 1.83854 1.21309 0.89429 0.81423 0.71765 1.90809 1.67440 1.36764 1.47901 1.19167 0.88706 0.95676 1.13393 1.21212 0.94287 0.96682 0.93104 1.21128 0.92919 0.98168 1.04712 1.18210 0.83557 0.94192 0.95070 1.43419 1.03851 1.32785 1.50960 1.21254 0.90514 0.81107 0.76761 1.90725 1.72680 1.32777 1.44302 1.22135 0.89874 0.96425 1.01455 1.61561 1.24243 1.03117 1.36242 1.20251 0.85847 0.95837 0.94448 1.21322 1.01404 1.20563 1.09930 0.94176 1.25842 1.00632 0.98155 0.94955 1.70071 1.25945 1.42852 1.20672 0.85807 0.77933 0.79272 0.80448 1.19349 1.21931 1.16406 1.21461 0.96986 0.90455 0.91154 1.22951 1.01017 1.00185 0.98981 1.22643 1.02587 0.84000 0.91866 1.87873 1.47875 1.47861 1.48714 1.22579 0.90908 0.97481 0.89745 1.22314 1.03002 0.94883 0.98405 1.21265 0.94690 0.97937 1.03420 1.21394 0.92974 0.98430 0.93019 0.91540 0.85000 0.91907 0.83177 0.81331 0.72761 0.86284 0.88490 0.96178 0.95220 0.92952 0.90792 0.88754 0.91686 0.87390 0.91762 0.89133 0.92031 0.91050 0.93425 0.85189 0.83516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.57 113.37 1.20 1.56 16 2 O -0.36 -6.95 9.81 -56.52 -0.55 -7.51 16 3 C 0.51 11.51 7.89 70.25 0.55 12.06 16 4 O -0.54 -14.08 16.13 19.81 0.32 -13.76 16 5 C -0.17 -3.48 5.88 -20.09 -0.12 -3.60 16 6 C -0.03 -0.60 9.58 22.51 0.22 -0.38 16 7 C -0.15 -2.23 9.94 22.35 0.22 -2.01 16 8 C 0.19 3.58 6.27 38.37 0.24 3.82 16 9 N -0.66 -11.13 5.31 -303.49 -1.61 -12.74 16 10 C 0.52 13.20 7.18 87.66 0.63 13.83 16 11 O -0.53 -18.71 13.07 -3.03 -0.04 -18.75 16 12 C 0.03 0.81 5.38 85.55 0.46 1.27 16 13 N -0.53 -19.54 3.91 -879.37 -3.44 -22.97 16 14 C 0.16 6.93 3.61 85.56 0.31 7.24 16 15 C -0.49 -27.21 7.60 25.60 0.19 -27.01 16 16 H 0.04 2.55 6.81 -2.91 -0.02 2.53 16 17 C 0.00 0.01 5.47 84.65 0.46 0.47 16 18 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 19 Si 0.94 42.23 27.42 68.60 1.88 44.11 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.24 -9.59 6.61 99.48 0.66 -8.93 16 23 C 0.11 3.67 1.95 45.03 0.09 3.76 16 24 C -0.19 -5.46 4.80 30.68 0.15 -5.32 16 25 C 0.07 1.68 6.84 72.01 0.49 2.18 16 26 O -0.40 -13.40 10.77 -148.98 -1.60 -15.00 16 27 C 0.07 2.29 6.84 72.01 0.49 2.78 16 28 C -0.15 -5.94 4.50 30.68 0.14 -5.80 16 29 C -0.15 -3.49 8.65 22.35 0.19 -3.30 16 30 C -0.04 -0.82 9.60 22.51 0.22 -0.60 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.15 2.30 7.64 -2.91 -0.02 2.28 16 35 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 36 H 0.43 3.53 8.82 -92.71 -0.82 2.71 16 37 H 0.12 2.67 7.51 -2.39 -0.02 2.65 16 38 H 0.10 1.73 6.47 -2.39 -0.02 1.71 16 39 H 0.02 0.86 4.16 -2.39 -0.01 0.85 16 40 H 0.03 1.20 6.73 -2.38 -0.02 1.19 16 41 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 42 H 0.07 2.39 6.93 -2.39 -0.02 2.37 16 43 H 0.09 2.00 6.76 -2.39 -0.02 1.99 16 44 H 0.06 2.25 5.67 -2.38 -0.01 2.24 16 45 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 47 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 48 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.07 3.53 5.35 -2.39 -0.01 3.52 16 50 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 51 H 0.13 3.45 6.31 -2.91 -0.02 3.44 16 52 H 0.15 2.71 7.60 -2.91 -0.02 2.69 16 Total: -1.00 -80.12 411.99 1.50 -78.62 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.10 Total: 26.29 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 6.14 Total: 0.94 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -4.75 Total: -94.95 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -1.88 Total: -55.02 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.88 Total: 44.11 kcal Total: -80.12 1.50 -78.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070018720.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.994 kcal (2) G-P(sol) polarization free energy of solvation -80.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds