Wall clock time and date at job start Tue Mar 31 2020 06:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39721 * 125.77727 * 2 1 4 4 C 1.36169 * 107.85657 * 180.11678 * 3 2 1 5 5 N 1.39334 * 126.26220 * 179.88495 * 4 3 2 6 6 C 1.34780 * 119.99844 * 359.68517 * 5 4 3 7 7 O 1.21564 * 120.00391 * 0.02562 * 6 5 4 8 8 C 1.47849 * 119.99789 * 179.97438 * 6 5 4 9 9 C 1.38925 * 121.11511 * 354.15065 * 8 6 5 10 10 C 1.39248 * 119.57760 * 180.02562 * 9 8 6 11 11 C 1.50702 * 119.05746 * 179.97438 * 10 9 8 12 12 C 1.53005 * 117.49816 * 343.72927 * 11 10 9 13 13 C 1.52994 * 117.50083 * 275.07026 * 11 10 9 14 14 N 1.31005 * 121.88896 * 359.97411 * 10 9 8 15 15 C 1.33543 * 121.82869 * 0.02562 * 14 10 9 16 16 C 1.40711 * 120.96381 * 180.02562 * 15 14 10 17 17 C 1.36066 * 119.73855 * 179.97438 * 16 15 14 18 18 C 1.39352 * 121.05039 * 359.68207 * 17 16 15 19 19 C 1.36257 * 120.83792 * 0.63491 * 18 17 16 20 20 C 1.40090 * 119.63831 * 359.39189 * 19 18 17 21 21 N 1.35813 * 107.46816 * 359.62118 * 4 3 2 22 22 C 1.46507 * 126.09134 * 180.22091 * 21 4 3 23 23 C 1.50697 * 109.47262 * 89.99997 * 22 21 4 24 24 H 1.08000 * 120.00093 * 359.97438 * 23 22 21 25 25 C 1.37880 * 120.00005 * 180.02562 * 23 22 21 26 26 N 1.31508 * 119.99689 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99961 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.46971 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47006 * 119.99676 * 27 25 23 30 30 H 1.48490 * 109.46860 * 239.99984 * 27 25 23 31 31 N 1.30843 * 125.77544 * 179.68579 * 2 1 3 32 32 H 1.08999 * 109.46937 * 270.29128 * 1 2 3 33 33 H 1.09001 * 109.47444 * 30.29275 * 1 2 3 34 34 H 1.09002 * 109.47151 * 150.29147 * 1 2 3 35 35 H 1.07999 * 126.06891 * 359.97438 * 3 2 1 36 36 H 0.96998 * 120.00022 * 179.68792 * 5 4 3 37 37 H 1.08005 * 120.21104 * 0.02562 * 9 8 6 38 38 H 1.09003 * 115.55205 * 129.38960 * 11 10 9 39 39 H 1.09006 * 117.49592 * 359.97438 * 12 11 10 40 40 H 1.09001 * 117.50100 * 145.01873 * 12 11 10 41 41 H 1.09002 * 117.49806 * 214.98044 * 13 11 10 42 42 H 1.09000 * 117.49990 * 359.96893 * 13 11 10 43 43 H 1.07994 * 120.13465 * 0.02562 * 16 15 14 44 44 H 1.07993 * 119.47642 * 179.97438 * 17 16 15 45 45 H 1.08001 * 119.58366 * 180.32655 * 18 17 16 46 46 H 1.08002 * 120.17663 * 179.67298 * 19 18 17 47 47 H 1.09000 * 109.46455 * 209.99764 * 22 21 4 48 48 H 1.09002 * 109.46760 * 329.99520 * 22 21 4 49 49 H 0.97007 * 119.99825 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6195 0.7146 -0.0026 5 7 4.7493 1.5299 -0.0058 6 6 4.6127 2.8708 -0.0129 7 8 3.5037 3.3688 -0.0160 8 6 5.8116 3.7360 -0.0156 9 6 7.0859 3.1973 0.1101 10 6 8.1929 4.0420 0.1041 11 6 9.5698 3.4452 0.2418 12 6 9.6685 2.0079 0.7571 13 6 10.0841 3.1743 1.6571 14 7 8.0717 5.3408 -0.0180 15 6 6.8790 5.9282 -0.1430 16 6 6.7700 7.3250 -0.2735 17 6 5.5420 7.8973 -0.3999 18 6 4.3847 7.1210 -0.4091 19 6 4.4513 5.7663 -0.2786 20 6 5.6992 5.1436 -0.1462 21 7 3.6088 -0.6435 0.0043 22 6 4.7858 -1.5158 0.0090 23 6 5.1892 -1.8077 1.4314 24 1 4.6255 -1.3853 2.2500 25 6 6.2786 -2.6131 1.6876 26 7 6.9652 -3.1270 0.6907 27 14 6.7790 -2.9742 3.4507 28 1 5.8511 -2.2813 4.3804 29 1 6.7203 -4.4383 3.6919 30 1 8.1635 -2.4896 3.6814 31 7 2.2719 -1.0615 0.0058 32 1 -0.3633 0.0052 1.0277 33 1 -0.3634 0.8873 -0.5184 34 1 -0.3633 -0.8926 -0.5093 35 1 1.9874 2.1598 -0.0004 36 1 5.6342 1.1326 -0.0029 37 1 7.2173 2.1301 0.2119 38 1 10.2969 3.7628 -0.5057 39 1 8.7375 1.4942 0.9969 40 1 10.4607 1.3802 0.3490 41 1 11.1494 3.3135 1.8407 42 1 9.4267 3.4283 2.4886 43 1 7.6574 7.9403 -0.2742 44 1 5.4633 8.9697 -0.4993 45 1 3.4225 7.5996 -0.5160 46 1 3.5472 5.1756 -0.2819 47 1 4.5478 -2.4498 -0.5001 48 1 5.6077 -1.0198 -0.5073 49 1 7.7319 -3.6934 0.8709 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071185683.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:01 Heat of formation + Delta-G solvation = 131.912300 kcal Electronic energy + Delta-G solvation = -33722.235652 eV Core-core repulsion = 29424.083695 eV Total energy + Delta-G solvation = -4298.151957 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.164 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.52836 -40.71462 -39.14089 -38.30226 -36.17187 -34.99149 -33.88138 -33.65983 -32.14565 -30.54292 -30.35018 -29.19507 -28.30730 -26.11323 -25.52452 -24.54397 -23.40237 -22.80699 -22.40398 -21.82507 -20.96235 -19.93998 -19.36070 -18.00406 -17.57387 -17.48183 -16.87249 -16.43957 -16.01976 -15.55044 -15.29620 -15.17863 -15.03239 -14.77056 -14.55466 -14.31979 -14.22900 -13.93822 -13.53284 -13.34701 -12.94830 -12.83290 -12.57758 -12.46515 -12.14277 -12.08821 -11.86383 -11.83519 -11.66937 -11.58275 -11.42527 -11.13368 -10.96369 -10.75122 -10.63254 -10.59471 -10.51384 -10.42181 -10.32400 -9.85573 -9.77860 -9.33039 -8.87828 -8.78483 -8.43117 -7.99680 -7.55760 -6.39431 -4.48265 -0.12929 0.57421 1.49601 2.32770 2.56052 2.67291 3.10681 3.11182 3.20395 3.25892 3.49686 3.52769 3.64169 3.80423 3.99115 4.18758 4.24313 4.36274 4.50913 4.59044 4.74476 4.82387 4.87184 4.91917 4.93873 5.01023 5.16638 5.27120 5.29021 5.41595 5.46999 5.53139 5.57599 5.76124 5.82597 5.87692 5.95473 5.98874 6.00193 6.07291 6.08247 6.12804 6.16169 6.26294 6.32319 6.43064 6.56346 6.68608 6.74896 6.96540 7.36926 7.46235 7.54064 7.67763 7.72190 7.76147 8.09808 8.53188 8.63303 9.19838 10.67515 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.006954 B = 0.003638 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4025.514233 B = 7695.381636 C =11166.926208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.050 3.950 3 C -0.288 4.288 4 C 0.296 3.704 5 N -0.627 5.627 6 C 0.569 3.431 7 O -0.500 6.500 8 C -0.063 4.063 9 C -0.129 4.129 10 C 0.189 3.811 11 C -0.115 4.115 12 C -0.170 4.170 13 C -0.159 4.159 14 N -0.452 5.452 15 C 0.130 3.870 16 C -0.099 4.099 17 C -0.098 4.098 18 C -0.120 4.120 19 C -0.098 4.098 20 C -0.066 4.066 21 N -0.343 5.343 22 C 0.256 3.744 23 C -0.542 4.542 24 H 0.065 0.935 25 C 0.069 3.931 26 N -0.888 5.888 27 Si 0.903 3.097 28 H -0.271 1.271 29 H -0.279 1.279 30 H -0.279 1.279 31 N -0.280 5.280 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.163 0.837 36 H 0.416 0.584 37 H 0.148 0.852 38 H 0.126 0.874 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.136 0.864 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.170 0.830 47 H 0.058 0.942 48 H 0.043 0.957 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.921 18.005 -2.674 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.320 4.320 4 C 0.074 3.926 5 N -0.273 5.273 6 C 0.356 3.644 7 O -0.375 6.375 8 C -0.074 4.074 9 C -0.149 4.149 10 C 0.037 3.963 11 C -0.134 4.134 12 C -0.207 4.207 13 C -0.197 4.197 14 N -0.161 5.161 15 C 0.008 3.992 16 C -0.118 4.118 17 C -0.117 4.117 18 C -0.138 4.138 19 C -0.116 4.116 20 C -0.069 4.069 21 N -0.129 5.129 22 C 0.138 3.862 23 C -0.580 4.580 24 H 0.084 0.916 25 C -0.135 4.135 26 N -0.525 5.525 27 Si 0.730 3.270 28 H -0.196 1.196 29 H -0.205 1.205 30 H -0.205 1.205 31 N -0.105 5.105 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.180 0.820 36 H 0.254 0.746 37 H 0.165 0.835 38 H 0.144 0.856 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.154 0.846 44 H 0.147 0.853 45 H 0.147 0.853 46 H 0.187 0.813 47 H 0.076 0.924 48 H 0.061 0.939 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.163 17.510 -2.744 17.855 hybrid contribution 0.432 -0.291 0.961 1.093 sum 2.595 17.219 -1.782 17.504 Atomic orbital electron populations 1.20031 0.87480 1.02408 1.02223 1.22025 0.96583 0.90926 1.01901 1.21276 0.88948 1.00534 1.21200 1.17954 0.87640 0.83384 1.03583 1.42535 1.08713 1.05194 1.70892 1.17838 0.88589 0.80951 0.77028 1.90535 1.25949 1.72841 1.48207 1.20093 0.92906 0.93260 1.01162 1.22388 0.91766 1.02129 0.98659 1.20413 0.93842 0.88407 0.93623 1.20839 0.93534 0.99268 0.99767 1.23220 1.04485 0.90117 1.02904 1.22986 1.01981 1.02173 0.92536 1.67508 1.25951 1.11610 1.11007 1.18821 0.87239 0.94361 0.98740 1.20749 0.98485 0.91809 1.00730 1.20986 0.92205 1.00388 0.98159 1.21096 0.98741 0.94049 0.99927 1.22064 0.98470 0.95473 0.95609 1.18618 0.95362 0.91697 1.01242 1.49533 1.06553 1.01926 1.54919 1.19652 0.77759 0.89760 0.99002 1.21374 1.13392 1.32012 0.91263 0.91630 1.24918 0.95671 0.94794 0.98146 1.69922 1.19116 1.32414 1.31054 0.86342 0.78442 0.78544 0.83688 1.19559 1.20480 1.20486 1.77358 0.86096 1.21795 1.25238 0.91254 0.91092 0.91490 0.82000 0.74592 0.83472 0.85629 0.87698 0.87449 0.87965 0.88607 0.84618 0.85276 0.85314 0.81328 0.92399 0.93903 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.44 36.01 0.38 -0.52 16 2 C 0.05 0.98 7.20 -82.46 -0.59 0.39 16 3 C -0.29 -5.67 9.58 -39.77 -0.38 -6.05 16 4 C 0.30 6.07 7.68 -152.78 -1.17 4.90 16 5 N -0.63 -10.86 5.37 -12.20 -0.07 -10.93 16 6 C 0.57 9.20 7.71 -12.33 -0.10 9.11 16 7 O -0.50 -8.62 10.65 5.31 0.06 -8.56 16 8 C -0.06 -0.90 5.94 -104.34 -0.62 -1.52 16 9 C -0.13 -1.67 8.83 -38.95 -0.34 -2.02 16 10 C 0.19 2.41 6.46 -82.57 -0.53 1.88 16 11 C -0.12 -1.22 6.19 -91.77 -0.57 -1.79 16 12 C -0.17 -1.75 9.78 -26.69 -0.26 -2.01 16 13 C -0.16 -1.55 10.24 -26.70 -0.27 -1.83 16 14 N -0.45 -6.13 10.19 -7.26 -0.07 -6.21 16 15 C 0.13 1.74 6.61 -84.87 -0.56 1.18 16 16 C -0.10 -1.07 9.99 -39.43 -0.39 -1.46 16 17 C -0.10 -0.89 9.94 -39.95 -0.40 -1.29 16 18 C -0.12 -1.22 9.96 -39.88 -0.40 -1.61 16 19 C -0.10 -1.26 9.25 -39.60 -0.37 -1.63 16 20 C -0.07 -0.93 5.76 -106.52 -0.61 -1.54 16 21 N -0.34 -7.83 3.62 -61.45 -0.22 -8.05 16 22 C 0.26 6.19 6.02 -5.19 -0.03 6.16 16 23 C -0.54 -14.10 9.39 -34.44 -0.32 -14.43 16 24 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 25 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 26 N -0.89 -23.37 13.29 55.43 0.74 -22.63 16 27 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 30 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 31 N -0.28 -6.34 12.56 33.64 0.42 -5.92 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.16 3.03 5.83 -52.49 -0.31 2.73 16 36 H 0.42 6.66 6.16 -40.82 -0.25 6.41 16 37 H 0.15 1.74 4.68 -52.48 -0.25 1.50 16 38 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.10 1.18 6.34 -51.93 -0.33 0.85 16 40 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 46 H 0.17 2.33 4.98 -52.49 -0.26 2.07 16 47 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 48 H 0.04 1.00 7.52 -51.93 -0.39 0.61 16 49 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 409.92 15.07 6.18 6.18 Total: -1.00 -30.61 409.92 -11.62 -42.23 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -5.98 Total: 11.23 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -7.65 Total: -12.42 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.80 Total: -53.73 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.06 Total: -8.56 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.61 -11.62 -42.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071185683.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.142 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds