Wall clock time and date at job start Tue Mar 31 2020 06:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39721 * 125.77727 * 2 1 4 4 C 1.36169 * 107.85657 * 180.11678 * 3 2 1 5 5 N 1.39334 * 126.26220 * 179.88495 * 4 3 2 6 6 C 1.34780 * 119.99844 * 359.68517 * 5 4 3 7 7 O 1.21564 * 120.00391 * 0.02562 * 6 5 4 8 8 C 1.47849 * 119.99789 * 179.97438 * 6 5 4 9 9 C 1.38925 * 121.11511 * 354.15065 * 8 6 5 10 10 C 1.39248 * 119.57760 * 180.02562 * 9 8 6 11 11 C 1.50702 * 119.05746 * 179.97438 * 10 9 8 12 12 C 1.53005 * 117.49816 * 343.72927 * 11 10 9 13 13 C 1.52994 * 117.50083 * 275.07026 * 11 10 9 14 14 N 1.31005 * 121.88896 * 359.97411 * 10 9 8 15 15 C 1.33543 * 121.82869 * 0.02562 * 14 10 9 16 16 C 1.40711 * 120.96381 * 180.02562 * 15 14 10 17 17 C 1.36066 * 119.73855 * 179.97438 * 16 15 14 18 18 C 1.39352 * 121.05039 * 359.68207 * 17 16 15 19 19 C 1.36257 * 120.83792 * 0.63491 * 18 17 16 20 20 C 1.40090 * 119.63831 * 359.39189 * 19 18 17 21 21 N 1.35813 * 107.46816 * 359.62118 * 4 3 2 22 22 C 1.46507 * 126.09134 * 180.22091 * 21 4 3 23 23 C 1.50697 * 109.47262 * 89.99997 * 22 21 4 24 24 H 1.08000 * 120.00093 * 359.97438 * 23 22 21 25 25 C 1.37880 * 120.00005 * 180.02562 * 23 22 21 26 26 N 1.31508 * 119.99689 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99961 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.46971 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47006 * 119.99676 * 27 25 23 30 30 H 1.48490 * 109.46860 * 239.99984 * 27 25 23 31 31 N 1.30843 * 125.77544 * 179.68579 * 2 1 3 32 32 H 1.08999 * 109.46937 * 270.29128 * 1 2 3 33 33 H 1.09001 * 109.47444 * 30.29275 * 1 2 3 34 34 H 1.09002 * 109.47151 * 150.29147 * 1 2 3 35 35 H 1.07999 * 126.06891 * 359.97438 * 3 2 1 36 36 H 0.96998 * 120.00022 * 179.68792 * 5 4 3 37 37 H 1.08005 * 120.21104 * 0.02562 * 9 8 6 38 38 H 1.09003 * 115.55205 * 129.38960 * 11 10 9 39 39 H 1.09006 * 117.49592 * 359.97438 * 12 11 10 40 40 H 1.09001 * 117.50100 * 145.01873 * 12 11 10 41 41 H 1.09002 * 117.49806 * 214.98044 * 13 11 10 42 42 H 1.09000 * 117.49990 * 359.96893 * 13 11 10 43 43 H 1.07994 * 120.13465 * 0.02562 * 16 15 14 44 44 H 1.07993 * 119.47642 * 179.97438 * 17 16 15 45 45 H 1.08001 * 119.58366 * 180.32655 * 18 17 16 46 46 H 1.08002 * 120.17663 * 179.67298 * 19 18 17 47 47 H 1.09000 * 109.46455 * 209.99764 * 22 21 4 48 48 H 1.09002 * 109.46760 * 329.99520 * 22 21 4 49 49 H 0.97007 * 119.99825 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6195 0.7146 -0.0026 5 7 4.7493 1.5299 -0.0058 6 6 4.6127 2.8708 -0.0129 7 8 3.5037 3.3688 -0.0160 8 6 5.8116 3.7360 -0.0156 9 6 7.0859 3.1973 0.1101 10 6 8.1929 4.0420 0.1041 11 6 9.5698 3.4452 0.2418 12 6 9.6685 2.0079 0.7571 13 6 10.0841 3.1743 1.6571 14 7 8.0717 5.3408 -0.0180 15 6 6.8790 5.9282 -0.1430 16 6 6.7700 7.3250 -0.2735 17 6 5.5420 7.8973 -0.3999 18 6 4.3847 7.1210 -0.4091 19 6 4.4513 5.7663 -0.2786 20 6 5.6992 5.1436 -0.1462 21 7 3.6088 -0.6435 0.0043 22 6 4.7858 -1.5158 0.0090 23 6 5.1892 -1.8077 1.4314 24 1 4.6255 -1.3853 2.2500 25 6 6.2786 -2.6131 1.6876 26 7 6.9652 -3.1270 0.6907 27 14 6.7790 -2.9742 3.4507 28 1 5.8511 -2.2813 4.3804 29 1 6.7203 -4.4383 3.6919 30 1 8.1635 -2.4896 3.6814 31 7 2.2719 -1.0615 0.0058 32 1 -0.3633 0.0052 1.0277 33 1 -0.3634 0.8873 -0.5184 34 1 -0.3633 -0.8926 -0.5093 35 1 1.9874 2.1598 -0.0004 36 1 5.6342 1.1326 -0.0029 37 1 7.2173 2.1301 0.2119 38 1 10.2969 3.7628 -0.5057 39 1 8.7375 1.4942 0.9969 40 1 10.4607 1.3802 0.3490 41 1 11.1494 3.3135 1.8407 42 1 9.4267 3.4283 2.4886 43 1 7.6574 7.9403 -0.2742 44 1 5.4633 8.9697 -0.4993 45 1 3.4225 7.5996 -0.5160 46 1 3.5472 5.1756 -0.2819 47 1 4.5478 -2.4498 -0.5001 48 1 5.6077 -1.0198 -0.5073 49 1 7.7319 -3.6934 0.8709 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071185683.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:00 Heat of formation + Delta-G solvation = 116.930249 kcal Electronic energy + Delta-G solvation = -33722.885322 eV Core-core repulsion = 29424.083695 eV Total energy + Delta-G solvation = -4298.801628 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.164 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.74314 -42.05644 -40.46933 -39.16212 -37.04276 -36.43558 -35.70710 -34.70737 -33.86567 -31.46955 -31.34788 -30.71191 -29.82060 -27.82947 -26.60341 -25.50229 -24.84981 -24.22599 -23.20502 -22.86888 -22.09211 -21.42837 -20.72689 -18.96510 -18.89132 -18.69693 -18.59406 -17.85982 -17.15761 -16.88756 -16.59725 -16.25778 -16.23357 -15.94348 -15.86320 -15.73631 -15.33784 -14.99180 -14.67285 -14.56847 -14.44485 -14.19864 -14.04924 -13.63374 -13.43451 -13.31051 -13.14599 -12.96639 -12.92089 -12.73420 -12.64020 -12.46627 -12.33632 -12.25989 -12.07821 -11.72779 -11.71067 -11.65680 -11.44468 -11.40105 -11.24576 -10.77066 -10.45981 -9.78551 -9.68649 -9.36690 -9.12290 -8.37489 -6.54884 -1.15185 -0.36110 0.45596 0.94458 1.14459 1.33937 1.37739 1.48530 1.57064 1.83498 2.03833 2.06570 2.32468 2.66618 2.89238 2.92831 2.99337 3.15428 3.38840 3.54751 3.67513 3.78564 3.93072 3.98040 4.03869 4.08693 4.13654 4.16195 4.33372 4.36021 4.50707 4.55503 4.58416 4.68794 4.72672 4.77201 4.82190 4.89554 4.92417 4.94227 5.02723 5.10432 5.14323 5.17584 5.19988 5.20604 5.29876 5.40898 5.49254 5.50556 5.74741 5.83570 5.91120 5.99280 6.14675 6.53008 6.68880 6.70616 6.95466 7.17189 8.69121 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.006954 B = 0.003638 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4025.514233 B = 7695.381636 C =11166.926208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.059 3.941 3 C -0.297 4.297 4 C 0.294 3.706 5 N -0.628 5.628 6 C 0.572 3.428 7 O -0.511 6.511 8 C -0.080 4.080 9 C -0.126 4.126 10 C 0.179 3.821 11 C -0.117 4.117 12 C -0.175 4.175 13 C -0.152 4.152 14 N -0.456 5.456 15 C 0.110 3.890 16 C -0.104 4.104 17 C -0.086 4.086 18 C -0.104 4.104 19 C -0.127 4.127 20 C -0.080 4.080 21 N -0.366 5.366 22 C 0.272 3.728 23 C -0.557 4.557 24 H 0.046 0.954 25 C 0.033 3.967 26 N -0.909 5.909 27 Si 0.963 3.037 28 H -0.279 1.279 29 H -0.276 1.276 30 H -0.261 1.261 31 N -0.324 5.324 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.173 0.827 36 H 0.419 0.581 37 H 0.152 0.848 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.155 0.845 44 H 0.171 0.829 45 H 0.158 0.842 46 H 0.155 0.845 47 H 0.029 0.971 48 H 0.047 0.953 49 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.366 20.609 -2.196 20.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C -0.329 4.329 4 C 0.072 3.928 5 N -0.275 5.275 6 C 0.361 3.639 7 O -0.386 6.386 8 C -0.091 4.091 9 C -0.147 4.147 10 C 0.027 3.973 11 C -0.135 4.135 12 C -0.212 4.212 13 C -0.190 4.190 14 N -0.165 5.165 15 C -0.012 4.012 16 C -0.122 4.122 17 C -0.105 4.105 18 C -0.121 4.121 19 C -0.146 4.146 20 C -0.083 4.083 21 N -0.152 5.152 22 C 0.153 3.847 23 C -0.595 4.595 24 H 0.064 0.936 25 C -0.169 4.169 26 N -0.547 5.547 27 Si 0.787 3.213 28 H -0.204 1.204 29 H -0.201 1.201 30 H -0.186 1.186 31 N -0.149 5.149 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.094 0.906 35 H 0.190 0.810 36 H 0.258 0.742 37 H 0.169 0.831 38 H 0.157 0.843 39 H 0.108 0.892 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.105 0.895 43 H 0.173 0.827 44 H 0.188 0.812 45 H 0.176 0.824 46 H 0.172 0.828 47 H 0.047 0.953 48 H 0.064 0.936 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.616 20.132 -2.276 20.428 hybrid contribution 0.214 -0.930 0.769 1.226 sum 2.830 19.201 -1.507 19.467 Atomic orbital electron populations 1.20242 0.83745 1.04179 1.03776 1.22885 0.98804 0.89892 0.99020 1.21521 0.88744 1.01085 1.21506 1.18313 0.89015 0.82880 1.02607 1.42638 1.08138 1.05445 1.71285 1.18175 0.89229 0.80453 0.76090 1.90515 1.26659 1.72900 1.48556 1.19977 0.92363 0.93508 1.03236 1.22491 0.91640 1.02484 0.98075 1.20709 0.94609 0.88330 0.93703 1.20896 0.92709 0.99224 1.00719 1.23238 1.04286 0.90255 1.03467 1.23069 1.02996 1.01174 0.91717 1.67555 1.26185 1.11836 1.10933 1.19222 0.86870 0.95630 0.99480 1.21091 1.00124 0.90734 1.00245 1.21424 0.90923 1.02293 0.95892 1.21496 1.00650 0.92962 0.97024 1.22007 0.97471 0.96849 0.98237 1.18796 0.96312 0.91470 1.01718 1.49342 1.06379 1.02553 1.56926 1.19250 0.78550 0.88989 0.97895 1.21400 1.13844 1.32809 0.91465 0.93592 1.25599 0.95327 0.94216 1.01772 1.69985 1.19408 1.32524 1.32739 0.85432 0.78613 0.78231 0.78986 1.20394 1.20120 1.18598 1.77310 0.86316 1.23624 1.27691 0.89648 0.88408 0.90620 0.80972 0.74207 0.83090 0.84309 0.89201 0.86221 0.85826 0.89504 0.82708 0.81181 0.82420 0.82835 0.95275 0.93552 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.65 10.44 71.24 0.74 -0.91 16 2 C 0.06 2.32 7.20 43.06 0.31 2.63 16 3 C -0.30 -11.87 9.58 22.15 0.21 -11.66 16 4 C 0.29 12.49 7.68 131.21 1.01 13.50 16 5 N -0.63 -22.83 5.37 -310.79 -1.67 -24.50 16 6 C 0.57 19.27 7.71 86.79 0.67 19.94 16 7 O -0.51 -18.10 10.65 -3.92 -0.04 -18.14 16 8 C -0.08 -2.38 5.94 -19.68 -0.12 -2.49 16 9 C -0.13 -3.41 8.83 22.68 0.20 -3.21 16 10 C 0.18 4.55 6.46 42.93 0.28 4.83 16 11 C -0.12 -2.39 6.19 -11.54 -0.07 -2.46 16 12 C -0.18 -3.54 9.78 30.62 0.30 -3.24 16 13 C -0.15 -2.81 10.24 30.62 0.31 -2.50 16 14 N -0.46 -12.12 10.19 -176.87 -1.80 -13.92 16 15 C 0.11 2.86 6.61 40.34 0.27 3.12 16 16 C -0.10 -1.98 9.99 22.37 0.22 -1.75 16 17 C -0.09 -1.26 9.94 22.03 0.22 -1.04 16 18 C -0.10 -1.83 9.96 22.08 0.22 -1.61 16 19 C -0.13 -3.22 9.25 22.26 0.21 -3.01 16 20 C -0.08 -2.26 5.76 -21.09 -0.12 -2.38 16 21 N -0.37 -17.46 3.62 -348.33 -1.26 -18.73 16 22 C 0.27 13.86 6.02 85.63 0.52 14.37 16 23 C -0.56 -30.06 9.39 25.60 0.24 -29.82 16 24 H 0.05 2.62 7.81 -2.91 -0.02 2.59 16 25 C 0.03 1.73 5.46 84.66 0.46 2.19 16 26 N -0.91 -48.46 13.29 21.45 0.28 -48.18 16 27 Si 0.96 41.41 29.54 68.60 2.03 43.44 16 28 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 29 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 30 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 31 N -0.32 -15.20 12.56 -47.47 -0.60 -15.80 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.17 6.46 5.83 -2.91 -0.02 6.45 16 36 H 0.42 14.32 6.16 -92.71 -0.57 13.75 16 37 H 0.15 3.82 4.68 -2.91 -0.01 3.81 16 38 H 0.14 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.09 2.08 6.34 -2.38 -0.02 2.07 16 40 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 44 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 45 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 46 H 0.15 4.32 4.98 -2.91 -0.01 4.30 16 47 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.05 2.28 7.52 -2.39 -0.02 2.26 16 49 H 0.28 13.66 8.31 -92.70 -0.77 12.89 16 Total: -1.00 -68.12 409.92 3.47 -64.65 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: 0.45 Total: 36.66 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 6.08 Total: -5.50 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -5.04 Total: -121.12 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.04 Total: -18.14 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -68.12 3.47 -64.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071185683.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.582 kcal (2) G-P(sol) polarization free energy of solvation -68.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds